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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0041600 |
| Transcript ID | LotjaGi5g1v0041600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleolar GTP-binding protein 2; TAIR: AT1G52980.1 GTP-binding family protein; Swiss-Prot: sp|A2XGQ1|NUG2_ORYSI Nuclear/nucleolar GTPase 2; TrEMBL-Plants: tr|I1M3A3|I1M3A3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0041600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6973150..6979305) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAACCCTAATTCATAGCTTTCTCCCTTCATTTCCAAGTTATCAGTTTAGCCGACATCCCCTTCTTACAAAACCTCAT TCTCACCTTGCGCCTCACTACTCTTTCACACTCTCTCAGAAATGGCGAAGAAGAAGGAGCGCAAAGTCAACGTCTCCGGC AAACCGAAGCATTCCCTCGACGTGAACCGGAGCAATGACGCCACCAAGAAGGAGGTGCGCTCCGCCGCCACCGTCCGCCG TCTCAAGATGTACAAGTCCAGACCCGTTCGCGACAAAGGGGGCAAGATCTTATCCCACGAGTTACAGTCCAAGGAGCTTC CCTCCACGCGAATCCAACCTGATCGCCGCTGGTTCGGTCAGTCCTCTCCTGTTTCATCAATTCATTGATTAATTATCATC AAGATTTTAGGGTTTGATGTGAGAATTTTAATTGTTTTGGTTGGTTTCATGATCATCGCAGCGAACACTAGGGTTGTGAA TCAGAAAGAGCTTGAGTTTTTCAGAGAAGAGCTGCAAACTCGTATGTCAAGTAATTACAATGTTATTCTCCAGGAGAAGA AGCTGCCCTTGTCACTGCTCAATGATCATCAGAAGGTTTGTTTATTTTGGTTCTCTTCAGTTGCATAGTTGTTAATGTGT GGAATTTTTTGATTTATTGATTTGTGGGTTTTTGGATGTAGCAATCAAGGGTTCACCTTCTTGATAGACAGCCTTTCACG GATGCGTTTGGACCCAAGACTAAAAGAAAGCGCCCTGGCCTGTTGGCGTCTGATTATGAGTCCTTAGCTAAGAAAGCTGA TGATTCACATGGTAAAAATTATGGCTTCTTTGTGATTTAGCATGTTGGATTCATTGTGTGTTTTTTTAGAGTAGAGTTTT TCAATTGGGGTTGTGTATCCCTGACGTTGTGGATAATAAATAATTAGGGAGAAATGATGTTGATACGGCCAGTGTGGTGG AGGCCTCGAGTCCAAAACTATGATGCGGCGTGTACACTGAACCATGATTTAAAACCTTGGAAAAATAGTTTTTGAAAAAA AATCAAGAAATTATTTTGAAGATTTTTTTTAGCTTATCCAAACATCCTTACTTTGTTTTCTTGTTTTCCATTGGTGTACC TATGCTCTGTTTGGTTCAAACTTCAAAGGAGAGTAGGGGAGGGGAGGTATTTTAATTAGATAATTTGATCGGTTTAGAGG CGGGAGCAGAGGGGAAATAAGCCTCTTCTTGTTTGGTTTGTGAGGAAAGACACGGATAGTAAAACAAATATACTTTTTAT TCCTTACTTGAACTTCTAAACACAATGTTGGGTTTACAAATATATGTAAGGATGTGTCAGGGTATTTTAGTCACATGATC TATCAGCCCTCCATTTTCCCTAATTTTGGAAGGAGCTAAAAATTGAATCACAGGTGATTTTGGTCCCCTCAATTCCCCTC CCACCCCCTCCAGAAATTCGAACTAAATAATATAACATAAAAAAAAACCCCTCCCCTCCAACCCAGCTGTATGTTAGTTT ATTTGCTTAACTGAAAGTTGAAACTGAATGACCACACTTTTTGATTCTTTTGTGGCAGTGCTTGTTTTATGTGATTCGTC ATTTCTTCAACCAATTAATGCTATAGTTAATGTAACTATTGTTAATATTTTTCTTCATTACTTTTCAGAAGCTTTTGAAG AAAAGTACGGTTCTAGTGGAACTGCAGAAGCTGATGAAGCAGATGGATTTAGAGATTTAGTGCGGCATAATATGTTTGAG AAAGGTCAAAGCAAACGCATATGGGGTGAACTCTACAAGGTCATAGATTCTTCAGATGTTGTTGTCCAGGTAAAATCTCA TCTTTTGTAGCAATTTTGTTCAACTTTCTGCATATGTGTATGATCATGTTGACTGATCCTGACATGACATGCAAGTGTGT TTACTTATTAGGTAATTCGATTTGGTGTCTAAACTCTAAAGGTTAAAAAATTGTACTTTATGATGGACATGTCTGCTGCA AATTGGCATGCGACCTTACTCTGTCAAATGTTAACATGATTTTTAATTTTCATAAAGTTTGTCATGATAATATTTGGGAT AAAAGTTAAAAGCTCAAGAGCTAATATTCCACTTTTCAAGTATTTCTTTCTATGATAGTTTCATGTTTCTTTCATGTGAA GAGTCCATAGTAGGTCAAATTTTGTTCTGACTGCCATATTCCACGGAGTTGGCCTACACATTTCTCTTCTACTTTTCAAG TTTGAATGTTAATGTATCCTAATGCAGGTTCTAGATGCAAGGGATCCGCAAGGAACACGGTGTTACCATTTAGAGAAGCA TTTGAAAGAAAATTGCAAGTACAAGCACATGGTGCTTTTACTGAATAAGGTTATTACTTATTAAGATCATTTTATGTGCT TGACATTGTTCTAAAATTTCACCAAATACCCTAATCTATTATTTTGCAATATATCACATTTTAAATCAAATTTTTTGCAG TGTGATCTGATTCCTGCTTGGGCAACAAAAGGATGGCTTAGAGTTTTGTCTAAAGAATATCCAACTCTAGCATTCCACGC AAGCATTAACAAGTCCTTTGGAAAGGTATATGTAGTACACCTGATGTTTTAGTTGTGTTACTTCGTGAAAGAAATAAAAT ATTGTTGAAGTTGGAGATAACACATCTTTCTTTCCTCTCCTTTAACTATTCTGTATCTTCAGCTATTTGTTATTTTCCTA ATAGCCATTATCATGATTAGGGTTCACTTCTATCGGTTCTGAGACAATTTGCTCGATTGAAAACTGATAAGCAAGCAATA TCCGTTGGATTTATTGGATATCCAAATGTCGGGAAGTCATCAGTGATTAATACACTGCGAACAAAAAATGTAAGCATTCT TTCTCCTTTACTTCTTCTGGTTGCTGCTTAATTTGTTTGGCGTGGAAATTAATCCAAGCATAGAAGCTCAAATTTATTCT CAAATCCTCTCTGGACTCCATGTTCAAAGCATGGTTGTGGAATAAGTATTTTAACATGTTGATTGACGTGTGCCATTATG TGTCAAAGGTCTGCAAGGTTGCTCCAATTCCAGGGGAAACAAAAGTCTGGCAGTATATAACTCTTACAAAGAGGACCTTT TTGATTGATTGCCCAGGTGTTGTCTACCAAAACAAAGATACTGAAACAGATGTTGTGCTAAAGGGTGTGGTAGGTTTCTT TCTGTATTCTCTAATTTTATTTGTCAAACACTTAGTGAATAATATTATGTTCGGACTCTTTTTTTCATTTAGTGTTACTT TACTGAGCATAATAACTTCATTGGACTCATGTAGATTACTCCACCTAGTGGGGAAAGGCTTTGGTTGTTCTAATTTGTTG TTAGGGCTTCTCGTTTTACTTTTTAGGGATATGGTGTTAACCAGTCAAACCGGTAGTCTCCAGCGATATCATCTAGCTTG TTGGGTTGTTGTCTAGTGGTATATTATTGATTGTGATTTGTAAAATTCAGTTCCATAATGAAGTATTCTTAGGTTTTACA AAAAGGAATATGGGCTAGTTTAATATCTCTTTGGGATATTTAGCCCAGGCACAGACAGACTAGTGGTGTTATCTGCGGGC ATTCATGCCCACAAAATATGATTATGGTCAATATTGCTTCACTAGTATGCTGATTTGTTAAAATGGTGACTATCTATTAT AGATACATAATACTGTGTTGAGTTGTAGTGAGTTAACCTATCAACCTAATGATCATTTTATGTTGTATTTTCTAATTGCC AGGACTCACGCTTGTTTTACTTGCTCATTGAATAATTTACTCCTGCTTTAATATGCTAACAGAAGTCCTAGTGAAGTTTA TTTTGCTTATTAGTTTAATATCTACATTAGATTATTACATTCTGGCTAAGTACTTGGTTTATTTTCAGGTACGTGTAACA AACTTGAAAGATGCTGCAGATCATATAGGTGAGGTTTTGAAACGTGTGAAGTTGGAGCACTTGCAAAGAGCATATAGAAT ACAAGAATGGTATGTTTCTTTGCCTTTCTTCATGGTGACAAGTAGGTTTGTAAAGCGTGTTGACCTTTTGTATTCTTGTG TTTGCTGATGATGACCTAAGCTTCCAATCTTTGATATTTACAAAATCTGTTATTGTAGTTGATAGAGAACATCATTTTCT TACCATTTCATCAAACCAACCGACATGAAAACTAAAGACTACTAAAAGTAGTTAAAGTGGTTCAAAATCGACTGCCTGAC CCTATTATATCAGGCTGCAGCTTTTGGCTCAGCTGGTCTGATTCTTAAAATGTGAAAATCTCTATGTGAAGGCATCTTGT AAATTTTCCCCCCTCTGCCCCCTAGTTTTAGCACCTAATGATGAATCATTAAAAGTAAATTGGGGATGACATGATCATTC TACATGTGACTATGACATGCAGTTAATACTTACATTGATTTGCTTGTCAATTTGTTAATATAGCTTATGTACAACACTTG GGTTTTCAGAATATGTTTTTCTTGTCATCAGGGTTGATGAAAATGACTTCCTACTTCAGCTTTGCAAATCGACAGGCAAA CTTTTGAAGGTATTCTTTCTGAGTTGATCTAGTCATCTAGATTCTTAGTTTTATATTTTCTTGAAGCAATTCATTATAGG ATTGTTTTTGGTTCTGACCATCAGCTCTATCAATGTATCTAGCTTTCTTCATGACGGCTTAGACTATATATGCTTTCTTT GTGTACATTCTTCTATTCATGAGATATCTATCTTTTGTCCTGACTGGCTTATGAGCTAAAGCAGCAGTTATTTTCTGCTT GCTTCTCCTCTTGAAGGAGAAACCAATGCAATTCAATGGGTAATTTGGTATCCCCTTCCCCCTCTTTTATGTCAGTAGTT TGTCAAATTGTTTCATTTGGGTATTCATTTAATTCTTTTTTTTTGGAAGCTTTTTGCTTTGTTAAGGGCTGTATGGCAGA CTTTAGTGTGACATTTACTTGTGTTCCAGGGAGGTGAGCCTGACCTGATGACTGCCGCAAAGATGGTACTTCATGACTGG CAGAGGGGTAAAATTCCCTTTTTCGTTCCTCCCCCACGACTGGATGACTTGTCCGAGGAACCTAATGTTAATGGAATTGA TGTCGCTGATGGCGTTGATAGCAACCAAGCATCTGCTGCTATTAAAGCTATCGCAAATGTTCTTTCATCCCAGCAACAAA GAAGTGTACCTGTTCAGAAGGATTTATTTAGTGAGAACGAGTTGGAAGGGGAAACTGCTGATCAATCTCTGAACACAGGG GATCCAGACACTACAGATCCATCTGAGGAGCTTCATTCTGCTGAACTGGTCCCAACAAAGGAGTCATGAGTTTTGGTGGC AGCATAGCTGTTGGGGGTATGAGTTGGTTTTATTTCAATTCCTGAAAAAGCTTTCCTTCCCATTTGCAACAAGGAAATCA TGAGTTTTGGTGGCAGTGTAGTTGTTGGCGTTTGCGTTAGTATTATTTCTATTCCGGAAATTTAAGTAGAAGTTTAGGGC AATTTAAAAGTTGAAAACCATTTATCAACCTAAATTATATAGCCATGTAACTGCGGAATTATATCCATACTACCTTTTTG AATTTATTTGCTCTATATAGGAATAATGACTCTTTGCTTTAGAATGGGTTTTGTTTTACTGATTCCAATTTTTGCTATGA CAAAATAGAATGCACAGGATCAGAATCTGTGATAAATGAAATATATTAGTTACCTTTGCCCTCATCGCCTTGTATGGAAT TGAACTCTTCAATTATTTCATTTGCTAGCCTCTCCACATGACCATGCATTGGGAAATATCGGAGCCAAGCTCAATAATTA CACAATACTATGAAAAATTACAGCTTATACTATTATGTGTTTTAACTTTTTGTTAACCATCTTCTAACACCTAGGATAGA ATTCCAGTTTTTTCGGTTCCTCTTTTCATATTGAAGATAAGTGCAACAGTATCATAGATGATGTTACGGTTATAAAGAAT CATGAAGGCCTCATCAAGATCTATTGAGGAAACTCTTTTTGGCTTTTAAAAAAAATGAGATCTTATAAAGAATCATGAAG GCCTCATCAAGATCTATTGAGGAAACTCTTTTTGGCTTTTAAAAAAAATGAGTGATCTCGTATTTTAACATTTACT
CDS sequence (LotjaGi5g1v0041600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGAAGAAGGAGCGCAAAGTCAACGTCTCCGGCAAACCGAAGCATTCCCTCGACGTGAACCGGAGCAATGACGC CACCAAGAAGGAGGTGCGCTCCGCCGCCACCGTCCGCCGTCTCAAGATGTACAAGTCCAGACCCGTTCGCGACAAAGGGG GCAAGATCTTATCCCACGAGTTACAGTCCAAGGAGCTTCCCTCCACGCGAATCCAACCTGATCGCCGCTGGTTCGCGAAC ACTAGGGTTGTGAATCAGAAAGAGCTTGAGTTTTTCAGAGAAGAGCTGCAAACTCGTATGTCAAGTAATTACAATGTTAT TCTCCAGGAGAAGAAGCTGCCCTTGTCACTGCTCAATGATCATCAGAAGCAATCAAGGGTTCACCTTCTTGATAGACAGC CTTTCACGGATGCGTTTGGACCCAAGACTAAAAGAAAGCGCCCTGGCCTGTTGGCGTCTGATTATGAGTCCTTAGCTAAG AAAGCTGATGATTCACATGAAGCTTTTGAAGAAAAGTACGGTTCTAGTGGAACTGCAGAAGCTGATGAAGCAGATGGATT TAGAGATTTAGTGCGGCATAATATGTTTGAGAAAGGTCAAAGCAAACGCATATGGGGTGAACTCTACAAGGTCATAGATT CTTCAGATGTTGTTGTCCAGGTTCTAGATGCAAGGGATCCGCAAGGAACACGGTGTTACCATTTAGAGAAGCATTTGAAA GAAAATTGCAAGTACAAGCACATGGTGCTTTTACTGAATAAGTGTGATCTGATTCCTGCTTGGGCAACAAAAGGATGGCT TAGAGTTTTGTCTAAAGAATATCCAACTCTAGCATTCCACGCAAGCATTAACAAGTCCTTTGGAAAGGGTTCACTTCTAT CGGTTCTGAGACAATTTGCTCGATTGAAAACTGATAAGCAAGCAATATCCGTTGGATTTATTGGATATCCAAATGTCGGG AAGTCATCAGTGATTAATACACTGCGAACAAAAAATGTCTGCAAGGTTGCTCCAATTCCAGGGGAAACAAAAGTCTGGCA GTATATAACTCTTACAAAGAGGACCTTTTTGATTGATTGCCCAGGTGTTGTCTACCAAAACAAAGATACTGAAACAGATG TTGTGCTAAAGGGTGTGGTACGTGTAACAAACTTGAAAGATGCTGCAGATCATATAGGTGAGGTTTTGAAACGTGTGAAG TTGGAGCACTTGCAAAGAGCATATAGAATACAAGAATGGGTTGATGAAAATGACTTCCTACTTCAGCTTTGCAAATCGAC AGGCAAACTTTTGAAGGGAGGTGAGCCTGACCTGATGACTGCCGCAAAGATGGTACTTCATGACTGGCAGAGGGGTAAAA TTCCCTTTTTCGTTCCTCCCCCACGACTGGATGACTTGTCCGAGGAACCTAATGTTAATGGAATTGATGTCGCTGATGGC GTTGATAGCAACCAAGCATCTGCTGCTATTAAAGCTATCGCAAATGTTCTTTCATCCCAGCAACAAAGAAGTGTACCTGT TCAGAAGGATTTATTTAGTGAGAACGAGTTGGAAGGGGAAACTGCTGATCAATCTCTGAACACAGGGGATCCAGACACTA CAGATCCATCTGAGGAGCTTCATTCTGCTGAACTGGTCCCAACAAAGGAGTCATGA
Protein sequence (LotjaGi5g1v0041600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKKERKVNVSGKPKHSLDVNRSNDATKKEVRSAATVRRLKMYKSRPVRDKGGKILSHELQSKELPSTRIQPDRRWFAN TRVVNQKELEFFREELQTRMSSNYNVILQEKKLPLSLLNDHQKQSRVHLLDRQPFTDAFGPKTKRKRPGLLASDYESLAK KADDSHEAFEEKYGSSGTAEADEADGFRDLVRHNMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLK ENCKYKHMVLLLNKCDLIPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFARLKTDKQAISVGFIGYPNVG KSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRTFLIDCPGVVYQNKDTETDVVLKGVVRVTNLKDAADHIGEVLKRVK LEHLQRAYRIQEWVDENDFLLQLCKSTGKLLKGGEPDLMTAAKMVLHDWQRGKIPFFVPPPRLDDLSEEPNVNGIDVADG VDSNQASAAIKAIANVLSSQQQRSVPVQKDLFSENELEGETADQSLNTGDPDTTDPSEELHSAELVPTKES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| PANTHER | 1 | 534 | 534 | 4.6E-250 | ||
| PANTHER | 1 | 534 | 534 | 4.6E-250 | – | |
| Pfam | 43 | 168 | 126 | 6.0E-45 | ||
| Gene3D | 195 | 365 | 171 | 1.3E-43 | – | |
| SUPERFAMILY | 201 | 436 | 236 | 1.25E-37 | ||
| ProSiteProfiles | 205 | 366 | 162 | 36.285 | ||
| CDD | 207 | 363 | 157 | 1.34928E-116 | – | |
| PRINTS | 311 | 331 | 21 | 1.4E-5 | ||
| Pfam | 311 | 397 | 87 | 6.0E-14 | ||
| PRINTS | 357 | 372 | 16 | 1.4E-5 | ||
| Gene3D | 374 | 454 | 81 | 2.2E-12 | ||
| MobiDBLite | 504 | 551 | 48 | - | – | |
| MobiDBLite | 518 | 533 | 16 | - | – | |
| MobiDBLite | 534 | 551 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
Expression pattern of LotjaGi5g1v0041600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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