Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0043500 |
| Transcript ID | LotjaGi5g1v0043500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heme A synthase; TAIR: AT5G56090.1 cytochrome c oxidase 15; Swiss-Prot: sp|Q9FKT8|COX15_ARATH Cytochrome c oxidase assembly protein COX15; TrEMBL-Plants: tr|A0A151U2K9|A0A151U2K9_CAJCA Cytochrome c oxidase assembly protein COX15 isogeny; Found in the gene: LotjaGi5g1v0043500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7348992..7353495) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTACTTGCTATAACAAGTCAAATTGGCTTTTGCATGGTGCAAGACCTAGAGTGGAGTTGCACCCTAACCGCCACCAT ATTCTAGATACAACTTTCATTAAAAAAATAAAATTACACAGTATTTTGTGATAGGCAAAACAAATTGTGAGAAAACCTTG CTTATATCTCTACACATAGTAATAAAGCACGCCGTAGCTGCCGTTCCCCGCCACCACCGGCGCTTTCCACTTCCCGTCAC CACCACCACCGCCTGCTGCACGTCGCCGACTGCCGCTATTTCTTGCTACCAATTTCTCAGGTTTCCTCCCTCTGTCGCTA CTTGTAAGCCACATCCAACTCTTCGTTTGGATTAACTGTTTTTTTATGAATGCAATGTAACAGAATCAGTTCTAATACTC TTACCTCTGCCATGGATTCATCTTCATAGCTAGCTTCACTTTCTTCCTTGCAGTTTAATTTTTTTGCCCATGATGCTTCC CATTTTGTTAATTTTCAGTGAATTTGTTTTTGCCCGCAAACTGTTTGATCAATTGTCTTAACGAATTCTAGTTTAGGGGT CTAGTTTGTTTTATAGATTAATTGGAAAATGTTGGGCAGACAACCTAATGGGGTAGACATTATATATAATGTGATGTGAT TGGAAGTGAGAGATAGCGAGAATATTGGGGTGTCGATACTGTCTTAACAAACTTCTCTGAAATTTCACAAACTTAATTAT AATGTTCAAATTCCTTCTAATTGTTCTGTTGAATTTGGGAGTTTAGAATTAGTTAAGTGAGTAAGCTTGTTTCAAGAAGG GAAAGATCTATTCAAACTTAGCATTGCAGAAACAAAACAGAGTGAGAGGAAGAAGAAGAAGAAGAATGTTTGGGAGGGGA ACAGCGTTTTCGATTCTGAAGCGCAGCAGAGAAGCTGCAATTCACAAGCTTAGAGGCACCACGACAAGGCCTTTCTCTCA CCCTTCCGCTCAAGAATCATTCAAGTTTCTCTCCCCTTCCATTGCCAGCCATGGCTTTCGAGCTTTTCGATCTCTTCCTA TTCCTAAGGTTACCTTCATTTTCATCATTTCCACCTTGTTTTTTCATCTGGGTTCTTTTCAAAATTCAATTTTTTCCTTT TATTTTTGTTCCTTTGTATTGGATGATCGCATCCTTCACGTTTTTTTAATATAGATTCACAATCAGAAATAAACTGTGAA ATGTGTCAATGGTATTCTGGTGAAAAAAGCTACAATTGTTAATTTTTATGCTGTGTGTGTATGTTTTGTATCTGAGGAAA GTGTGATGGTGCTTTGGTTAGGGACATCATGTCTCATACACGAGGAGCTTTTCTAAGGTGGTTTCTGCTGGGGCTGAACA TAAGGAGGGGTTGAAGCTGTTTGTGACAGGAGGTGCTCATGCCCAGAAAGTGGTGGGAATATGGCTCTTTGGCTCTGCCG CGTGGGTGTTTAGCATGGTGCTTCTTGGGGGTTTAACCAGACTCACTAGATCTGGTCTTTCAATGACTGATTGGAAATTC ACAGGTGGTCTTCCTCCTCTGTCAGATGAGGAATGGTTGCAAGAGTTTGAGAAGTACAAGCAGTCACCTGAATACAAGCG GTAAGATGCAAACAACTGCTTCAGCTGAGCATATACTGTGTCTGTAATCAACGTTTTAGGTATACCTTTATTTTAACATG AACTTTATTGGAAGTAATCTGTTTTTTTATCCTATCTAATTGAAAGGGGAACTTATGAAATGCACGGAGGGATTTATTTC TGAGAATAGAGTGATAAAACACTTCTAAACACTTGTAAAGAAATCCTCCTGAAGATGACTGAAATGAACGAATCAAATCA TAAAGTTTAGATGGATAAAATTGAGGGATGATATTGTTGACAATTTTACTCAACCCTCTCATACAAAATATCTACGTTTT TCTAAACAATCACTGCAATAAACACTATCTGGTTGTGTTTCAACTTTCAACTTTCAAGGAATATAGATGATAACTTTCAA GGATAATTTTTTTGAGATTGACCTTATGGGGCTGTGCCAATGGGCATTTTTATTCAAGTTCTATTATAATTTACAATTTT AGTCTTCATTATATATTGTAAAGTTAAAAGGATTGATCAAGTGGAAGTGAGTTGACACCCGTAGTTCTTATGAATGGTAT GATAATTTATTGAAACTTGTTGCAGTGTTAACAAAGGGATGACGATTGAAGAATTCAAGTTCATATATTGGATGGAATAT GCTCATCGTATGTGGGGAAGGGCGCTAGGAGTTATATTTGCTTTGCCGTATTCATATTTTCTTCATAAAGGGTATATTAC CTTGAGATTAGGACTGAGACTTTCTGCTCTATTTGCCCTGGGTGCTGGGCAGGGTCTCATTGGCTGGTGGATGGTTAAAA GTGGTTTAGAGGTTGGAGCATAAATAAAATAAATGTCTTGTTTATTTTATGACAAATTGACTAGAACAGCCAGATTCTAA TAATATTTTCCTTCCTCAGGAACCCCCAACTGAATATTCTCAACCAAGGGTAAGCCCTTATCGTCTAGCAGCTCACCTTA CATCAGCATTTGCTATTTACTGTGGTCTCTTTTGGACTGCACTTTCTGTTGTTATGCCAGAACCACCAGCTGAATCAGTA ACGTGGGTTCGTGAAGCAGCTAAAGTAAGGAGACTTGCATTGCCTGTCAGCCTACTGGTCGGTCTCACTGCTGTCTCCGG TGCGTTTGTTGCTGGAAATGATGCTGTAAGCTTGCTCAACAGTTTCACGCCTATCATATTTGTGCTTGAAATAATGATTG TGCCTTTGATGATGTTGAAAGATAATCATTTTGCTTTCATGTTGATTGCCAGGGGCATGCATTTAATACTTTTCCGAAGA TGGGTGATACATGGATACCAGAAGACATTTTTGAAATGAAACCTCTGATTCGAAATTTCTTTGAGAATACATCAACTGTA CAGGTAATTCCATGCTGGTTTATTGCTGAGAAGTTAAAAATTGTAGTAATTTTGTTCTTTTGACTTACATGTTAGATTGG TTTTTTATGCACTTTTCAAGAGTTTTGAAATTTGAAATGAATGAAGTTTTAAGAAATACTTTTTGAAGCATCTAACTTTG GAGAGGTTAGCAATTGATTTATCCTCATGAGTGTAATTTGCCAGTCAAAATTTAAATTTCAAATGTCAGCAGAACTTTTC CATTTCTTTCTTCCTTCGAACTTCGGAGCCTTGAGTTTATGTTGTTGGACACTTAGACTAGACTGCTACAAGGCAATAAA GGCACTTCAGTCCAGTTCCTTTAGTGGTTTGTGCATCGAAATTTAATAACATGAAGTTTAAATAAGTGTTCTGTTTTAAC AGCTCGATCACCGTATCCTTGCAACTGCAACTCTAATTTCCGTGGGTGCTTTGTGGGGGGCAACAAGAAAGCTTGACATA CATCCTGCAGTAAGATCTCTGATTGGAAGCATAGTTGGCATGGCAGCTCTTCAGGTTATTATTTCAGTATCCAGATTTAT ATTGTCAATAACATTTATCATTTTGTGTTGTTGGGTTCCTTCTTGTCTCTGGCTAGCTTGCCTCCCTTATCTAAGATCAA TACTCATACTTGTTCCATTAGCATTTTACTGATTCATGAACTATTCGAAGATGATGATGATGGTAATAGCAAGATAAAAA AGTTTGAGGAAAACTGTTTGATGTTTGATTTTTTGTCATCAGTTTACTGTAAAGTATAAGGTCATTCACGTGTCTTCACC AAATAGCTTAAACTCTTGAGATAGTTGGTTAGTACATAGTATTAGAGTCTCTATAACCAAGTGGTATTGAGTTCGCTCCT TGTTATTCTAAGTAAAAGGTTGAATCTTAGCACAAGTTAATTAGGTATGTTCATTGTCCATGCTTCAAGCTCAACAAACT CTTGCGTGATGGGACTTGTTAGAAATATAATTATAAAAATATATATGTCTTCACCAAACAACTTAAGCTGGATAGTTGAT TAGTTTAATCTACTATTTTTTATTTTTGTCATTAGTTGTATTATGTTATTAATTTTGTATGGTTACAGGTCACATTGGGG GTTTCAACACTTCTTTCATATGTACCTGTTTCACTGGGTACTGCACATCAAGCTGGAGCCTTAACACTTCTGACATTTAT GTTACTGCTTAATCACACGGTCCGAAAGCCATCCTTGTCCCTTCTCAAATCTCTTCCTCAGGTTGTCAAAGCAAACTAAC TGAAAAGAGTTGTGATATTTATTTTTTATGCTGAGTTTGGCATTGAGCTCCTTGTCCAATTTTTCACTGTTGGAATCTTT ATTTGGTTTGCACATTTGAGGCTTGAAAATTCATTATAATGCAACTGATCTGTTAATTATATCATCTATGATTTATGTAA CTTATGCTGAAAATCAGTACAGGGAATCTTATGTAAACTAATACAACTTAGAGTGGAAGAAGAATCTATGGCCTTCCATC TTTCATAATGACTTTTTTCTTGAC
CDS sequence (LotjaGi5g1v0043500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGGAGGGGAACAGCGTTTTCGATTCTGAAGCGCAGCAGAGAAGCTGCAATTCACAAGCTTAGAGGCACCACGAC AAGGCCTTTCTCTCACCCTTCCGCTCAAGAATCATTCAAGTTTCTCTCCCCTTCCATTGCCAGCCATGGCTTTCGAGCTT TTCGATCTCTTCCTATTCCTAAGGGACATCATGTCTCATACACGAGGAGCTTTTCTAAGGTGGTTTCTGCTGGGGCTGAA CATAAGGAGGGGTTGAAGCTGTTTGTGACAGGAGGTGCTCATGCCCAGAAAGTGGTGGGAATATGGCTCTTTGGCTCTGC CGCGTGGGTGTTTAGCATGGTGCTTCTTGGGGGTTTAACCAGACTCACTAGATCTGGTCTTTCAATGACTGATTGGAAAT TCACAGGTGGTCTTCCTCCTCTGTCAGATGAGGAATGGTTGCAAGAGTTTGAGAAGTACAAGCAGTCACCTGAATACAAG CGTGTTAACAAAGGGATGACGATTGAAGAATTCAAGTTCATATATTGGATGGAATATGCTCATCGTATGTGGGGAAGGGC GCTAGGAGTTATATTTGCTTTGCCGTATTCATATTTTCTTCATAAAGGGTATATTACCTTGAGATTAGGACTGAGACTTT CTGCTCTATTTGCCCTGGGTGCTGGGCAGGGTCTCATTGGCTGGTGGATGGTTAAAAGTGGTTTAGAGGAACCCCCAACT GAATATTCTCAACCAAGGGTAAGCCCTTATCGTCTAGCAGCTCACCTTACATCAGCATTTGCTATTTACTGTGGTCTCTT TTGGACTGCACTTTCTGTTGTTATGCCAGAACCACCAGCTGAATCAGTAACGTGGGTTCGTGAAGCAGCTAAAGTAAGGA GACTTGCATTGCCTGTCAGCCTACTGGTCGGTCTCACTGCTGTCTCCGGTGCGTTTGTTGCTGGAAATGATGCTGGGCAT GCATTTAATACTTTTCCGAAGATGGGTGATACATGGATACCAGAAGACATTTTTGAAATGAAACCTCTGATTCGAAATTT CTTTGAGAATACATCAACTGTACAGCTCGATCACCGTATCCTTGCAACTGCAACTCTAATTTCCGTGGGTGCTTTGTGGG GGGCAACAAGAAAGCTTGACATACATCCTGCAGTAAGATCTCTGATTGGAAGCATAGTTGGCATGGCAGCTCTTCAGGTC ACATTGGGGGTTTCAACACTTCTTTCATATGTACCTGTTTCACTGGGTACTGCACATCAAGCTGGAGCCTTAACACTTCT GACATTTATGTTACTGCTTAATCACACGGTCCGAAAGCCATCCTTGTCCCTTCTCAAATCTCTTCCTCAGGTTGTCAAAG CAAACTAA
Protein sequence (LotjaGi5g1v0043500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGRGTAFSILKRSREAAIHKLRGTTTRPFSHPSAQESFKFLSPSIASHGFRAFRSLPIPKGHHVSYTRSFSKVVSAGAE HKEGLKLFVTGGAHAQKVVGIWLFGSAAWVFSMVLLGGLTRLTRSGLSMTDWKFTGGLPPLSDEEWLQEFEKYKQSPEYK RVNKGMTIEEFKFIYWMEYAHRMWGRALGVIFALPYSYFLHKGYITLRLGLRLSALFALGAGQGLIGWWMVKSGLEEPPT EYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESVTWVREAAKVRRLALPVSLLVGLTAVSGAFVAGNDAGH AFNTFPKMGDTWIPEDIFEMKPLIRNFFENTSTVQLDHRILATATLISVGALWGATRKLDIHPAVRSLIGSIVGMAALQV TLGVSTLLSYVPVSLGTAHQAGALTLLTFMLLLNHTVRKPSLSLLKSLPQVVKAN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 97 | 97 | - | – | |
| PANTHER | 62 | 454 | 393 | 1.4E-194 | ||
| PANTHER | 62 | 454 | 393 | 1.4E-194 | – | |
| Hamap | 96 | 440 | 345 | 22.514 | ||
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 98 | 119 | 22 | - | – | |
| Pfam | 101 | 430 | 330 | 2.5E-115 | ||
| Phobius | 120 | 182 | 63 | - | – | |
| Phobius | 183 | 201 | 19 | - | – | |
| TMHMM | 183 | 200 | 18 | - | – | |
| Phobius | 202 | 212 | 11 | - | – | |
| Phobius | 213 | 231 | 19 | - | – | |
| TMHMM | 213 | 232 | 20 | - | – | |
| Phobius | 232 | 250 | 19 | - | – | |
| Phobius | 251 | 274 | 24 | - | – | |
| TMHMM | 252 | 274 | 23 | - | – | |
| Phobius | 275 | 294 | 20 | - | – | |
| TMHMM | 295 | 314 | 20 | - | – | |
| Phobius | 295 | 315 | 21 | - | – | |
| Phobius | 316 | 357 | 42 | - | – | |
| Phobius | 358 | 376 | 19 | - | – | |
| TMHMM | 358 | 375 | 18 | - | – | |
| Phobius | 377 | 387 | 11 | - | – | |
| TMHMM | 388 | 410 | 23 | - | – | |
| Phobius | 388 | 411 | 24 | - | – | |
| Phobius | 412 | 416 | 5 | - | – | |
| TMHMM | 415 | 437 | 23 | - | – | |
| Phobius | 417 | 437 | 21 | - | – | |
| Phobius | 438 | 455 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Heme a biosynthetic process | The chemical reactions and pathways resulting in the formation of heme a, a derivative of heme found in cytochrome aa3. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-CH group of donors | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0043500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…