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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0046700 |
| Transcript ID | LotjaGi5g1v0046700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0046700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7899916..7902039) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAAGCATTGAATCTAAGAAGAATCATTCAATCAATTCATTGTTTCTAACATGGTATCATGAGCTTTTAGCTTCCGCT TTCTCTCTTCGTCTCTGATTTTCTCGGGAAAATTCCTTTTCTGTTGGAATTTTCTTGGTGACGGTTACCTATCTTTTTTT TTTTTTTCTTTTCTTCTCAGACATTTTCTCGAACACTTTCTTGGCATTCTCTTAGCTATTGTTTCTACTTTCTCAGAGAT TTTCTCAAGCTTCTTCTACTTTCTCAGAGATTTTCTCGAGCACTTTCTCGGCATTCTCTTTGCCGTTTCTTCACTTCTCT TCACTGATTCTTCTGCATAAAGCTTTGAAGCTTATTCTACCTTCAACAATGGCTCCGATTACTCGAGCAAATTTGACAGA CTCGACTCACGATTACTACATTCATCCAAACGAGAATCCCTCACTTGTTCTCGTTTCTCCAGTTCTTGATGGGAGCAATT ACCATGGCTGGGCTCGTGCAATGGCGATGTCATTGCAGATGAAGAATAAGTTTGGTTTCGCTGATGGTTCGATTGCAAAG CTCTCCGATGATGATCCTATGCTTTCAGCTTGGAAGCGCTGCAATAATCTTGTGCTTTCGTGGATTAATCATTCGGTTTC TCCAGAGATAGCAACTAGCATCATCTGGATTGACACAGCTTCTGGAGCTTGGCAAGATCTGAAAGATCGTTTCTCGCAGG GAGATTCGGTAAGAATTTCTCACCTGCATCATGAATTGTATTCTCTAAATCAAGGTGATTTGTCTATTACTGCTTACTAC ACCAAGATGAAGATTCTGTGGGATGAACTATGCAATTATCGGCCAATTCCTGTATGTGTTTCCCCTCATGCGTGCTGTTG TGAGGCTGTGAAAATCTTCAAGCAATATAGGGAAAATGATTGTGTGCTGTGTTTCCTTAGAGGTTTGAATGATAATTTTG CTGTTGCTAGATCTCAGATTTTGTTGATGGAACCTTTGCCAACTTTGTCTAAGATTTTCTCTATGATAATACAACAAGAA AGACACTTAGGCATTGGAGTACTTCCTGAGCCAGCAGCTATGGCAGTTCATACTGGGAATACACAAGGCACATATTCTAA TTCCAACAGGGGAAGGTCGAATTCTCAGTATTCTTCAAGTAAATCCAATGTGCAGAGGTTGTGCACACACTGTGGAAGGC AGAATCACACTGTTGAAACATGCTTCCTTAAGCATGGCTATCCTTCCAACTTTCCAAATGGTTATAAGCCAAAGAAGGCT TACATTACAACTTCAGGAGGTGATTCACATTCTTCTTCAGATCAAGATGAACCTCCTTCTTCAAGTCTTGAGCTGACAAG AGAACAACTTCAAGGTTTACTGGCATTACTTCCTCAATCTAAGCCCACTGCAGTTTCACAAGCCCCCAACCTTAAGCCTA TTGCTGCTTCCAACCTTGTCAGTAGTCACAATGTTATTGCTAATAACATAGATATGGTCAATTCTCAATGGATCATGGAT TCAGGTGCCACTGATCACATTGCTTCTTCCTTATCTTTCTTTTCTTCTTACTACTCAATCAAACCTGTACCTGTATCTTT GCCTAATGGAGCTCATGCTATTGCAAACCATTTAGGGACAGTATTTCTTTCACCTACCCTGACTTTACATAATGTTCTCT ATGTACCTGAATTTTCTGTCAATCTTGTTTCTATACACAAGCTTACCAAAGTACTAAATCATAGATTGATTTTCACTGAT TCCTTGTGTTTGATTCAGGACAAGACCACTTTGAAGATGATTGGGAGAGCTGAGATCAAGGATGGGCTATACATCATGGA GCTTCCACCTATTACTAGTTTCAAACCACTTCATACTTTCCATTCTGTAAACATGAGTACTGTTTCTTCTTCTAATAAGT TGCCAAATATATGGCATCATAGGTTAGGACATCCATCTCAGCCTTGTTATATTTCTTTGCAACAAATGTACCCTGCTATT ACTACTTCTCCATGTAAGAATTGTGATACTTGTCATTTTGCTAAACAAAAAAGATTATCTTTTTCTTTGAGCCATACTAT TTCTGGAACTGTTTTGGAATTGTTGCATGTAGATATTTGGGGAC
CDS sequence (LotjaGi5g1v0046700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCGATTACTCGAGCAAATTTGACAGACTCGACTCACGATTACTACATTCATCCAAACGAGAATCCCTCACTTGT TCTCGTTTCTCCAGTTCTTGATGGGAGCAATTACCATGGCTGGGCTCGTGCAATGGCGATGTCATTGCAGATGAAGAATA AGTTTGGTTTCGCTGATGGTTCGATTGCAAAGCTCTCCGATGATGATCCTATGCTTTCAGCTTGGAAGCGCTGCAATAAT CTTGTGCTTTCGTGGATTAATCATTCGGTTTCTCCAGAGATAGCAACTAGCATCATCTGGATTGACACAGCTTCTGGAGC TTGGCAAGATCTGAAAGATCGTTTCTCGCAGGGAGATTCGGTAAGAATTTCTCACCTGCATCATGAATTGTATTCTCTAA ATCAAGGTGATTTGTCTATTACTGCTTACTACACCAAGATGAAGATTCTGTGGGATGAACTATGCAATTATCGGCCAATT CCTGTATGTGTTTCCCCTCATGCGTGCTGTTGTGAGGCTGTGAAAATCTTCAAGCAATATAGGGAAAATGATTGTGTGCT GTGTTTCCTTAGAGGTTTGAATGATAATTTTGCTGTTGCTAGATCTCAGATTTTGTTGATGGAACCTTTGCCAACTTTGT CTAAGATTTTCTCTATGATAATACAACAAGAAAGACACTTAGGCATTGGAGTACTTCCTGAGCCAGCAGCTATGGCAGTT CATACTGGGAATACACAAGGCACATATTCTAATTCCAACAGGGGAAGGTCGAATTCTCAGTATTCTTCAAGTAAATCCAA TGTGCAGAGGTTGTGCACACACTGTGGAAGGCAGAATCACACTGTTGAAACATGCTTCCTTAAGCATGGCTATCCTTCCA ACTTTCCAAATGGTTATAAGCCAAAGAAGGCTTACATTACAACTTCAGGAGGTGATTCACATTCTTCTTCAGATCAAGAT GAACCTCCTTCTTCAAGTCTTGAGCTGACAAGAGAACAACTTCAAGGTTTACTGGCATTACTTCCTCAATCTAAGCCCAC TGCAGTTTCACAAGCCCCCAACCTTAAGCCTATTGCTGCTTCCAACCTTGTCAGTAGTCACAATGTTATTGCTAATAACA TAGATATGGTCAATTCTCAATGGATCATGGATTCAGGACAAGACCACTTTGAAGATGATTGGGAGAGCTGA
Protein sequence (LotjaGi5g1v0046700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPITRANLTDSTHDYYIHPNENPSLVLVSPVLDGSNYHGWARAMAMSLQMKNKFGFADGSIAKLSDDDPMLSAWKRCNN LVLSWINHSVSPEIATSIIWIDTASGAWQDLKDRFSQGDSVRISHLHHELYSLNQGDLSITAYYTKMKILWDELCNYRPI PVCVSPHACCCEAVKIFKQYRENDCVLCFLRGLNDNFAVARSQILLMEPLPTLSKIFSMIIQQERHLGIGVLPEPAAMAV HTGNTQGTYSNSNRGRSNSQYSSSKSNVQRLCTHCGRQNHTVETCFLKHGYPSNFPNGYKPKKAYITTSGGDSHSSSDQD EPPSSSLELTREQLQGLLALLPQSKPTAVSQAPNLKPIAASNLVSSHNVIANNIDMVNSQWIMDSGQDHFEDDWES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 19 | 64 | 46 | 9.4E-16 | ||
| PANTHER | 51 | 334 | 284 | 6.0E-78 | – | |
| PANTHER | 51 | 334 | 284 | 6.0E-78 | – | |
| Pfam | 75 | 225 | 151 | 1.6E-8 | – | |
| MobiDBLite | 242 | 263 | 22 | - | – | |
| MobiDBLite | 302 | 328 | 27 | - | – | |
| MobiDBLite | 308 | 328 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0046700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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