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LotjaGi5g1v0054200.2

Overview

Field Value
Gene ID LotjaGi5g1v0054200
Transcript ID LotjaGi5g1v0054200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin carboxyl-terminal hydrolase, putative; TAIR: AT5G10790.1 ubiquitin-specific protease 22; Swiss-Prot: sp|Q9LEW0|UBP22_ARATH Ubiquitin carboxyl-terminal hydrolase 22; TrEMBL-Plants: tr|A0A151RT91|A0A151RT91_CAJCA Ubiquitinyl hydrolase 1; Found in the gene: LotjaGi5g1v0054200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:9224294..9228623) extracted from Lotus japonicus Gifu genome v1.2.

AACTTTTTCCATGCCATCACCTGTTTGCCGGTTTATTGTTTTTCAACTCCCATCCCATTTCTTTTCAATATCCCATTTTT AACCCCCTTACATTTTTTGATAATTCAAGTTTGGTCCCCATGTGAACTGAAAGTGTGTTACCCCATTTCTTGAAACCAGA TTGGTATCCGCCGCAACACCTCTCTTTCCTCTCCCCATTTCAATCGCTTCTTCATCTTCATTCCGATCTCATCAATTTCT GCAACTTTTCTTCCAGATTCTACCGTTATGATCCCAACAACAAACCCTTCTTCTTCTTCTTCTTCATACACAAACCCAGA ACCATGTCAACATCTTGTTGATTACAAGCTCAAGCATGGCTTCAATGGCTACAAAGCTATCCAAAATCTCCTTGTGACAT CTCCGATTGGGAGAACCAGTGTCAAGAAGCCTAATACAGCAATACCCAGATGCAGTTTCTGTAATGGGTGTCAAGGGAGA TTCTATTTATGTCTGATTTGCTCTTCATTCTCTTGTTTTGATCATACCCTTTTGCACCCTCAATCTGAATCTGGTCATGC TGTGTTTGTGGACATTGAAAGAGCTGAACTTTATTGTGGGGTGTGCTGTGATCAATTGTATGATCCTGATTTTGATCAAG TTGTGATGTCTAAACATTCAATGGGTGGGAATGGGAGTGAGAGCATTGGGCAGAGATTGATCAAAAGGAGGAGATTGGTT TCTGGGGTTGGATTGGATTTGGGGAAATTGAAGTACAGGTTTCCAGCTGAAGATCTGAGGGCTAAATCTTGTTATCCAAT GGGGTTGAGGGGGTTGAACAATCTGGGTAGTACTTGTTTCATGAATTCTGTGTTGCAAGCATTACTACATGCACCTCCTT TCAGGGACTATTTCTTGAGTGATGGTCATTGTTTGGATGCTTGTCAGAAGAGAACCATGGATCGGATGTGTTTGCTTTGT GATATAAATGCTGTTTTTTCAGCTGTGTATTCGGGTGATCGAAATCCATATAGCCCTGCTCAGTTTCTCTACAGGTCTGC CATTGTTCTTTATGTCATTATTCATTTTGGTGCATGTTTGGAAACTCAGTTTGAAAACCACAATGAAGCCGGAGAAAATC ACAGTGGACAGAAGCAACTTTCCTGAGCTTTTGCTTGTGTCAACTGTGACTTTGTCTTTACGGCGTGGTTTTTGAACGAG TTTACAAACACGCACTTAGCTTTTTGTCTCGTGAAAATTAGTAGCTTTACGGTGCTGATAAGTATTCCTGATAAAATAAA TTGCTTCTTTTGTGAAATTGTATGATTTTGAGTGTTCTGATATTCAACAAGCTGGAGATGAATTTGTTTGAATAAGTATA TAGAACAGAGGAAATTCGTTGATACTCTGAGGTTGTCAATTGTTATGAATTTACTCCATTGGTCTGACTGAAGTGGCAAA GTAGCATGTCATCCGGTAAAGATTTCTGTGACAAAAGCATATACTAACTTGATGTTTTTGTTATGATCTGTTTTTGCATA ACTCTAGTTGCAAGTTAGCTGGAGCAAACTTCAATTGATAAATTTTATGACTTTGGATTTGGACCCATTATGTTGCTTTG ATCCTCAAACTCCTGTTTCTTTTGAATGGTGAAAATTTTTGTTTTTGTTTCAAGCTGGTGGCAGCATTCAGCAAATTTAG CGAGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCAATGTTAGATGCAATCCATGAGAAAGAGGGCAAAACAAGG AACGGAAGCAGAGGTATTTAGATGCTAAGATTTGGCAGTTTCATTCAATTGTTGCTGCCTCATATTTGATGTGTGACTTT CTATGTTATAACTCTAGTTAATTACGTAATGTTGTACTACATCAAAAAAGTAAAAACATAGTGATATATAACTGGCTGGA AGGTTAGTCTATGAAGACATTGACAATTTTAACATCAACATTCATTCCAAACATTTTGCGGTCTGGGAAGCATTGTGCAT ATGAAAAAAGAAAGAAACAATTAAGAAAGTGCAGTTTTGTCAAATTACTCAGTTTTTATTTTTACCCAAATACATGGTGC ATGAATATTAGAAGGGGAGTTTAAGGTTACTGCCATGTGACTGAGGTCACGGGTTCAAATCTTGGAAGCAGTCTCTTGTG TAAAAAACAGAGTAAGATTGTGTGCAATAGATCAGGCGGTGGCACGAATCCAGCACTTAGTGGGAAGCTTTCATGCATCG GGCTGCCCTTTTTTTACATTGTGCATGATTATTGTTTTTTTACAGGTAACGGAGACTGTCAGTGCATTGCTCATAGAGTG TTTTATGGGCTATTGAGATCAGATGTTACCTGTATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTGTTTGGACAT TTCACTTAACTTAGATACCAATGTCTCTCTAACTGAAAACGGTAAAAAGCTTACCAAACGGGATGGGGAAGGAAGCATGT CTACTCTTTTGGGTTGTTTGGACTTGTTCACTAGGCCAGAGAAGTTGGGATCGGACCAGAAACTTTACTGCCAAAACTGT CAGCAAAGACAGAACTCATTGAAACAAATGTCAATTAGAAAGCTCCCTTTGGTACTTAGCTTGCATGTGAAACGGTTTGA GCACTCTTTTGTGAAGAAGACTTCAAGAAAAATAGATCGCTACCTGCATTTTCCATTCTCCTTGGACATGACACCATATA TGTCCTCTTCAATCCTCAGGGCCAGATATGGAAATAGAATCTTTGCTTTCGGGGGTGATGAACCAGACATGTTTTCCGAG TTTGATATTTTTGCAGTGGTGACACATTCAGGGACTCTCGAGTCGGGCCATTATGTTACTTTTGTGCGTTTGAGGAAGCA GTGGTACAGATGTGATGATGCTTGTATAACAGAGGTTGATGAGGCGACAGTCAGAGCTTCACAATGTTACATGATCTTCT ATGCGCAGAAAACCCTACAGGATAAAGCGAATGAAGATTTGAGTCTCCTGCCGAATTCCCCTGGAAGAGAGTTACTTCTT CCTATTGCTGGGTGTTGCTAGAGAGGATATTGAAGGTAGCACATCACTTCAAATGGTGGGTTGCAATTTGTGTATTCTAT AGCAGTGAATGCTGGTTCGATGTTTAGTCCTGCAAAGAGGGGTAGAGGGAGGCAGAAAAGAACTTGAGAAGATATTGTTA AAAATGATCTCATTATCAGTAATATCCTTTATAATCTGGCTTTCGATCGAGCTCAATGGCGTAGTGTGATCCATATAGCC GATCTCACTTAGCGGGATAAGACTTTGGTTGTTGTTTCGTTGTTTGGATAATCACAGTTCACAGTTGACAATATGGATTT GAAATATGCATATCTATAAGTTCAAGCTGCTAAAGGGGAATTTGGAAGTGAGAAGCCAAGTTGCTAGCTCGAGTGAGTTT AATATTTTGCATATTCGCATGGAGATATTTCAATGACAGCTTTGAGACGAAGATCAAGGAGCCAGAAGCAATTCAACTCC TTTACAACAAGCTTCCTCAAAATTCTTTAAATGCAATTTGCAGGTTAGTCATGTACATAGCTCATTTCAACTGATGATAC CGAAAGTTGTTCAACAACCATTGTTACTCTTCTGTCTCCCCTAACTAAAGTGTGGAGCAAAAGGAAAACTGCAGAGGGGA AAAAGTGGTTATGCGGATGATTGTTTCTAATTTGTGTGTCTAACAAGGACATTGTGTCCATTTGTTTACTAATCAGATCT CGTTTCTCTCCCCTCGTTAAGGAAAAAATAAGTTCAACTTCCTTTTCATTTTTGCCTCGTGACGGAACATTTTTCCGTTT TCATTTTATCCAATTTGTAACCGAACATGCTGATTGTAATACTCAAGACCCCGTGCCCGTTCGCTTTACACTCTATCTGC CTTTTATGATGAGAGTGAGAGTGCAGATTACTAAAAGAGATTGCATCTTTGGTGCACAATAGACAAGGGTATTGTTAAAG ACATGTTTGTTTCTTTAAATGTGATGTGAGGAATATTATTGCTCTAACTTAAAGGTATGGTTGTGTGAAAAGTACTGCCC CAGTTGATGCAACCATTTGATTAATTATATCATATTGAAAGTAATTCTGGATGCAACATCAGGTATATATGCTTACACAA ATGTGTTCACTTGGTATATCCAGATAATAGATAGGAGCATAAACTGAAACATTCTGGAGCTACAAAGATAGTTATTAAAT CGTTAGCGCTGCATAAAAACATTCCTCCTAGAGTAGCTGTTAATACGAATAACAGAAACTCTGTTATAGCCATTTCTGTA CATTCAATGT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0054200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATCCCAACAACAAACCCTTCTTCTTCTTCTTCTTCATACACAAACCCAGAACCATGTCAACATCTTGTTGATTACAA GCTCAAGCATGGCTTCAATGGCTACAAAGCTATCCAAAATCTCCTTGTGACATCTCCGATTGGGAGAACCAGTGTCAAGA AGCCTAATACAGCAATACCCAGATGCAGTTTCTGTAATGGGTGTCAAGGGAGATTCTATTTATGTCTGATTTGCTCTTCA TTCTCTTGTTTTGATCATACCCTTTTGCACCCTCAATCTGAATCTGGTCATGCTGTGTTTGTGGACATTGAAAGAGCTGA ACTTTATTGTGGGGTGTGCTGTGATCAATTGTATGATCCTGATTTTGATCAAGTTGTGATGTCTAAACATTCAATGGGTG GGAATGGGAGTGAGAGCATTGGGCAGAGATTGATCAAAAGGAGGAGATTGGTTTCTGGGGTTGGATTGGATTTGGGGAAA TTGAAGTACAGGTTTCCAGCTGAAGATCTGAGGGCTAAATCTTGTTATCCAATGGGGTTGAGGGGGTTGAACAATCTGGG TAGTACTTGTTTCATGAATTCTGTGTTGCAAGCATTACTACATGCACCTCCTTTCAGGGACTATTTCTTGAGTGATGGTC ATTGTTTGGATGCTTGTCAGAAGAGAACCATGGATCGGATGTGTTTGCTTTGTGATATAAATGCTGTTTTTTCAGCTGTG TATTCGGGTGATCGAAATCCATATAGCCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTA TGAGCAGCAGGATGCTCACGAGTTTTTCATTTCAATGTTAGATGCAATCCATGAGAAAGAGGGCAAAACAAGGAACGGAA GCAGAGGTAACGGAGACTGTCAGTGCATTGCTCATAGAGTGTTTTATGGGCTATTGAGATCAGATGTTACCTGTATGGCC TGTGGATTCACCTCAACAACCTATGACCCTTGTTTGGACATTTCACTTAACTTAGATACCAATGTCTCTCTAACTGAAAA CGGTAAAAAGCTTACCAAACGGGATGGGGAAGGAAGCATGTCTACTCTTTTGGGTTGTTTGGACTTGTTCACTAGGCCAG AGAAGTTGGGATCGGACCAGAAACTTTACTGCCAAAACTGTCAGCAAAGACAGAACTCATTGAAACAAATGTCAATTAGA AAGCTCCCTTTGGTACTTAGCTTGCATGTGAAACGGTTTGAGCACTCTTTTGTGAAGAAGACTTCAAGAAAAATAGATCG CTACCTGCATTTTCCATTCTCCTTGGACATGACACCATATATGTCCTCTTCAATCCTCAGGGCCAGATATGGAAATAGAA TCTTTGCTTTCGGGGGTGATGAACCAGACATGTTTTCCGAGTTTGATATTTTTGCAGTGGTGACACATTCAGGGACTCTC GAGTCGGGCCATTATGTTACTTTTGTGCGTTTGAGGAAGCAGTGGTACAGATGTGATGATGCTTGTATAACAGAGGTTGA TGAGGCGACAGTCAGAGCTTCACAATGTTACATGATCTTCTATGCGCAGAAAACCCTACAGGATAAAGCGAATGAAGATT TGAGTCTCCTGCCGAATTCCCCTGGAAGAGAGTTACTTCTTCCTATTGCTGGGTGTTGCTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0054200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIPTTNPSSSSSSYTNPEPCQHLVDYKLKHGFNGYKAIQNLLVTSPIGRTSVKKPNTAIPRCSFCNGCQGRFYLCLICSS FSCFDHTLLHPQSESGHAVFVDIERAELYCGVCCDQLYDPDFDQVVMSKHSMGGNGSESIGQRLIKRRRLVSGVGLDLGK LKYRFPAEDLRAKSCYPMGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSDGHCLDACQKRTMDRMCLLCDINAVFSAV YSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKTRNGSRGNGDCQCIAHRVFYGLLRSDVTCMA CGFTSTTYDPCLDISLNLDTNVSLTENGKKLTKRDGEGSMSTLLGCLDLFTRPEKLGSDQKLYCQNCQQRQNSLKQMSIR KLPLVLSLHVKRFEHSFVKKTSRKIDRYLHFPFSLDMTPYMSSSILRARYGNRIFAFGGDEPDMFSEFDIFAVVTHSGTL ESGHYVTFVRLRKQWYRCDDACITEVDEATVRASQCYMIFYAQKTLQDKANEDLSLLPNSPGRELLLPIAGCC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21646:SF49
13 550 538 3.0E-287 –
PANTHER
PTHR21646
13 550 538 3.0E-287 –
Gene3D
G3DSA:3.30.40.10
14 134 121 1.8E-14
IPR013083
SUPERFAMILY
SSF57850
19 124 106 3.3E-11 –
ProSiteProfiles
PS50271
60 119 60 11.855
IPR001607
Pfam
PF02148
62 121 60 5.1E-8
IPR001607
Gene3D
G3DSA:3.90.70.10
175 532 358 8.9E-99 –
SUPERFAMILY
SSF54001
177 522 346 4.51E-88
IPR038765
Pfam
PF00443
181 521 341 6.9E-51
IPR001394
ProSiteProfiles
PS50235
181 524 344 54.795
IPR028889
ProSitePatterns
PS00972
182 197 16 -
IPR018200

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of
GO:0036459
Molecular function Thiol-dependent ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0054200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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