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LotjaGi5g1v0055200.1

Overview

Field Value
Gene ID LotjaGi5g1v0055200
Transcript ID LotjaGi5g1v0055200.1
Lotus japonicus genome version Gifu v1.2
Description Chitinase; TAIR: AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain-containing protein; Swiss-Prot: sp|Q9W5U2|CHIT3_DROME Probable chitinase 3; TrEMBL-Plants: tr|A0A1B1J8Z2|A0A1B1J8Z2_LOTJA Class V chitinase protein; Found in the gene: LotjaGi5g1v0055200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:9369386..9372829) extracted from Lotus japonicus Gifu genome v1.2.

AAGATTTCACATATATATACACATGATCATCAAGCTCTTGGTTGCATTAATTCACTACCTCCATGAAACCATGGCCGTCC AAAGCATCATACCCCTTTTGGTTATTCTCATGAGCCTTCACTCTTATGCATTCACTAAACCTTCTTTACATAGGCAGCAG CCACCGCCCAAGGGTGGTGTTAGAGCGGCATATTGGCCTGCAGGGTCTGATTTCTCAACCTCTTCCATTGACACAAACTA CTTCACTCACATATACTACGCCTTTGTCCAACCTGCACCGGAATCCTTCAACCTCCAAATCAGTGAATCCGACAAGAAGT GGGCCCCCAAGTATGATGGAATCCGTAACATCCGTCCGCGGGTGACAACGCTGCTATCCATCGGAGGGGGTGGCAACAAC GCAACCCTCTTCTCAGAGATGGCTAGCAGCAAACGAAACCGCGCGAGCTTCATAAACTCCACCATCCACGTGGCGCGAAA GTACGAGTTCAATGGTCTTGACTTGGATTGGGAGTGGCCGAGAGATGAAAAAGACATGTCTAACCTTGCGTTGTAGTTAA AGGAATGGTACAAGGCTTTGGTGGTGGAAGCTAACACTAGTAGAAAATCACGTTTGCTTTTAACTTCTGCGGTGTATTTT AACTCCATGATTTCGCTTATTGGTAATGGGCCTAGGTTGTACCCGGTTCGAGCCATTCGGAAGTACTTGGATTGGGTTAA CCCAATGTGTTTTGATTTCCATGGCGCGTGGGCCAACGAAACGGGCTTTAACGCCGCGTTGTATGATCCAAATTCTAACA TAAGCACCAAGTATGGTATCGGGTCTTGGATCAGGTCAGGTGTGCCGGCCGAGAAACTGGTTATGGGTTTGCCGCTATAC GGGCGGGCGTGGGAGCTGAAGGATCCGAATGATCATGGGGTTGGGGCAAAAGCGGTTGGTCCAGCAGTTGATACAGATGG TAGTATGGACTATGATGAAATCTTGGTGTTTAATAAAGACACTGGTGCCAAGGTTGTGTATGATGAAGTGGCTGTGTCAT TCTACTCTTATTCGGGCACTACTTGGATCGGGTATGATGATGGACCCTCCATAACGAAGAAGGTTCAATTTGCTCGGTCA ATGGGCTTGAATGGGTATTTCTTTTGGGCTATTGGCAAGGACAAGGATTGGACCATCTCAAAACAAGGTAAGAAACCAAT ACGACAATACCACTTGTTTTCACCTCTTTATAATGATTGACAAAAAAAAAACACCTCTTTATAATTATTGACCAAATAAA ACCTCTTTATAATTTTTTTTAATAATACATTTTTGCAATTTTATTTTGATAATATACATTTTTAACAATATTCATTATTA TATCTGTCACGAGTCTGAATCCTCACTTTATAGAGTAAAGTAAGCCATTACAATCACTGATTGAGTTGTTTTATTAGCTT TTCAAGATAAGTAGTCAACGTTAATGATTATGATGATTATTTTATTCTTTAAAATGACTCTCTTATTTTAGAAGAGCTAG GTTCATATGGTAGAATAGTTGCAAAATAAATCCCTTTGGTAAAGGCATTCATGATCGTTATTTTGTTTTTTTATTTAATT TTTTTCTAGAAAATGATTTCTAAAATTAATCTATAACATTGACCCAAAATATTCCATTGTCAACAATTCATGTACTCTCT CTTTTTTCTAATTATTTTTAATTTCAATTTCTCATTTTACATATTTGTAGTATTAAAGATTTTTCTCTTTTAGGAGAGGA GATGGTTTTTTATTATAATTTTGATGGGTTTCTTGCATTTTAATGCAGGCTGAAGTCTTTAGATTTTATCCATATGATAA TGTTTGATATTTTGTTTGTTTGCTTGTGTTTTTTCTCATTTGGCAGCTTCAAATGCATGGGGATACTGAGGGCAATATAT GTTATTCCAAGCTTCATATAATGCTAGCTCAACCTTCATAATTGATAACTGATTAGATCATATATAAATTTATTTTGTCG CTACATTGTTGAATAATATCAGTGTTACGTACATTAGTGAATACTCTGATTTTCGATGAAAATATTGAATACTCTGATTA TGTACCAACAATGATTAGAAAACAATTTTGAGTTAAAATTAAAGCTGGGTACGAATAGTTAAGCATGCATAAGAATAAAC AATCATCCAATGCAAACAGGTTGAAGTCTAATGTGTTAAGAATTCACTGATCTTTTGGTGAAAACTTGTTTCTTTTAAAG AATTTTTTTTGTAAAATGCAAATTTAAATAATAGAGAAATGAAGCAATAAGAGATAAATACATGTGAAATACGATAATAT GTGCAGTGGCGGAGGAGGGGACATGCCCCTCCTTCTTACATGTGATACATATCTATATGAGCAGTACTTTGATTTTGGTC ACCTTAGTTTAGCTCTTCGAGTCTCAATTTTTTCTCTCCACCATCGGTTATGTGATAGGAAGAGATAGGATTGTCCACCG GAGGGGTTTGGTCAGATTCGGGTTGAAAACATTGATTTTGTCGAATGAAATACAAAAATCACCAGGCCCACCACCGTCCA TTTAGTAGCTACGGGTTGTTCAGGTTCGTCGAATCACGATTTCCTCGGTTGAGTTCGTGTGATTGTTGATCCAAAAAAAA GGATGAGCGAGAAGCACAAGAAGGATTTCGAGAAAATTACCAGTAAAATACAAAAAAAAAATAGTCTTAACCATCAACCA AAAATAAAGCCTTTATATATGGAAATAAAAATGACTCTAATGCAACACTTGATCTCATTCAATGGGTAAGAGCATCTTCA ACTTCAAATTGTTACATGCAACAATCAGATTTGTGACCTGTGAGTGCAAGTGTCAATTTTTCTGAGGAAGACCACTACAA GGAAATGGGTAAGACAAATAGAAGAAGAAAAATTTGGGGGATTAGGGTTAAAAGGGTAAGAACTAACCTTAAACTTCTGG ATATGACTTCTTTTGACATAGAGGCAGAGAAGGTCGGAGCGGTGCGATAGAGGTTCTCCGGAGCGGCACGGTGGAGGTTT CTCCTTCAAGGTCTCACGATAGAGACCGTCGTGATCAAGAACAGCGAAAGAGTGACGTCATGTTGGCCTTGTGACGGCGC AAAATGGTAGGCGAAGATAATCAAATCTTGGAACAAATTGGGGTTGGAGCGGTGAAGATAGTGGTAGAATGGTCGTGTGT AGTGGTGGTAAGAGAGGAAGCGGAGGTCCTAGGGTTTGTTTGATTTTTTCAAGTGAAAGAGAAAGAAGACCGAGAGAGAT GAGAAAAGAGAAGAGGCAGCGTTAAAGAAGATAGGAAGAGAGTGAGAAAGACTGATTCAGTAGGTTTAGATTATGATTAT GTAATGAAAGTGAGCCTAGGCTCCCATTTTTTTAATAGATTTGGTATGGTCTGTTCACAGCTCAAACCGCCACCGACCGC TTAT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0055200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTTCGCTTATTGGTAATGGGCCTAGGTTGTACCCGGTTCGAGCCATTCGGAAGTACTTGGATTGGGTTAACCCAAT GTGTTTTGATTTCCATGGCGCGTGGGCCAACGAAACGGGCTTTAACGCCGCGTTGTATGATCCAAATTCTAACATAAGCA CCAAGTATGGTATCGGGTCTTGGATCAGGTCAGGTGTGCCGGCCGAGAAACTGGTTATGGGTTTGCCGCTATACGGGCGG GCGTGGGAGCTGAAGGATCCGAATGATCATGGGGTTGGGGCAAAAGCGGTTGGTCCAGCAGTTGATACAGATGGTAGTAT GGACTATGATGAAATCTTGGTGTTTAATAAAGACACTGGTGCCAAGGTTGTGTATGATGAAGTGGCTGTGTCATTCTACT CTTATTCGGGCACTACTTGGATCGGGTATGATGATGGACCCTCCATAACGAAGAAGGTTCAATTTGCTCGGTCAATGGGC TTGAATGGGTATTTCTTTTGGGCTATTGGCAAGGACAAGGATTGGACCATCTCAAAACAAGCTTCAAATGCATGGGGATA CTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0055200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MISLIGNGPRLYPVRAIRKYLDWVNPMCFDFHGAWANETGFNAALYDPNSNISTKYGIGSWIRSGVPAEKLVMGLPLYGR AWELKDPNDHGVGAKAVGPAVDTDGSMDYDEILVFNKDTGAKVVYDEVAVSFYSYSGTTWIGYDDGPSITKKVQFARSMG LNGYFFWAIGKDKDWTISKQASNAWGY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00636
2 172 171 3.5E-6
IPR011583
PANTHER
PTHR11177
6 186 181 2.2E-92 –
PANTHER
PTHR11177:SF348
6 186 181 2.2E-92 –
Gene3D
G3DSA:3.20.20.80
11 173 163 6.2E-58 –
SUPERFAMILY
SSF51445
11 174 164 1.78E-30
IPR017853
Pfam
PF00704
12 172 161 4.8E-42
IPR001223
Gene3D
G3DSA:3.10.50.10
77 143 67 6.2E-58
IPR029070
SUPERFAMILY
SSF54556
78 143 66 1.96E-15
IPR029070

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0008061
Molecular function Chitin binding Interacting selectively and non-covalently with chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0055200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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