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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0056500 |
| Transcript ID | LotjaGi5g1v0056500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|A8F3R6|SYS_PSELT Serine--tRNA ligase; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0056500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9636481..9638632) extracted from Lotus japonicus Gifu genome v1.2.
GTAGAATCACTTCTGAATTCAATAACAATGAGAAATTCAGCCAAATACACTTCTCTCAAGATGGTATCAAGAGCAAATAT TCTCTTTCTTCTTCCGCACAGTATCTTCTTCTTCCTCTGATTTTCTGTGTTTCTACCAAGCTTCTTGAAGCTTCTTACAT ACTTCAACAATGGTGGATCGTGTTTTGATCACCATTTCTCTGTTTTTTCCTCGCTGATTGCTCGATTTCTGAAGCATTTT TTGCTCAGTTTCTGAAGCAATTTTTTCTTCTCCTTCAACTGAAGCTTTTTCCTTTCTTCAACAATGGCGACTCACGCTTC GATCACTGCTGCGAATCTTCAGGATTCAACTCATGATTACTACATTCATCCGAATGAGAATCCGTCTTTGGTGCTTGTGA CTCCGATTCTTGATGGAAGCAATTATCACGGTTGGGCTCGTGCGATGGAAATGTCTCTGCAGATGAAGAACAAGTTTGGT TTTGTGGATGGTTCTATCACCAAGCTTTCTGATACAGATCCTATGCTCTCTGCCTGGAAGCGTTGCAATAATCTTGTTCT TTCATGGATCAATCACTCTATTTCGCATGAGATAGCCACAAGTATCATCTGGATTGATACTGCATCAGCTGCTTGGAAGG ATCTGAAAGATCGTTTTTCACAAGGTGATTCTGTAAGAATCTCTCATCTTCATCATGAATTGTATTCTCTTAAGCAAGCT GATTTGTCAATTACTGCATATTACACAAAAATGAAGATTCTCTGGGATGAAATGTGCAACTATAGGCCAATTCCGACTTG TACTTCTTCTGATGCTTGTTGTTGTGAAGCTGTGAAAACCTTTAAGAGGTATCGAGACAATGATTGTGTACTTTGTTTCC TGCGAGGCCTGAATGATAACTATGCTGCAGCCCGTTCACAAATTTTGCTAATGGATCCTTTACCTGTTTTGCCAAAGATA TTCTCTATGATCATACAGCAGGAGAGACATCTTGGCATAGGAGTGTTGCCAGAACCTGCAGCAATGGCAGTTCAAACTTC ACAATCACAATCGCAGAATGCACAATCTCAGTCATCTGTTTCTAACAAAGGGAAACCGAGTTACCAAAAATCTTACAACA AGAGCAACAGGCAGTGTACCTATTATGGTAGAAACAATCACACAGTGGAAACTTATTTTCAGAAACATGGATATCCTCCT GGATTTCCAAATGGATATAAGCCAAAGAAGGCTTATCTTGCTGCTTCAGGTGATGATGTTCCTGCTGATGAGGAGCAGTC ATCTTCTACAAGTTTGGAACTCACAAGGGAACAACTTCAAGGTCTCTTAGCTTTGCTCCCTTCCTCTAAGCCTACAGCTA CTACACATTCTTCTAATCTTGTGAGCAGTCACAATGCTATTTCCAATGCCATAGGTAAACCTACTAAGCAATGGATCTTG GACTCAGGTGCCACTGATCACATTGCTTCTTCTCTCAGTTTCTTTGCTTCTTATTATGCCATAAAGTCCGTGCCTGTTTC ATTACCCAATGGAGAAAGTGCAATAGCACAACACATAGGAACAGTATATCTTTCTCCCACTTTGACTTTGCATAATGTTC TTTATGTGCCTAGTTTTTCTGTTAATCTAGTATCTATCCATAAACTTACCAAGGTATTGTCATACAAACTGATTTTCAGT GATGATTACTGTCATATACAGGACAAGATCACTTTGAAGATGATTGGGAGAGCTGAGATCAAGCATGGACTTTATATCAT GGTACTTCCACCACTACAACAAGTTCAACCTTTAGTTACTCTTCATTCAGTCAATATGGCTAGGTCATTACCAATCCAAC TGCCTCATATTTGGCATCATAGGCTAGGTCACCTTTCCCATTCTTGTTTTGAAAATTTACATAAGTTGTACCCTACTATC CCTCTATCCCATTGTACACCTTGTGATTCATGTCATTATGCTAAACAAAAAAGATTGTCATTTTCATTAAGTCACACTGT TTCTGCCAATGTATTAGCTCTATTACATGTGGATATCTGGGGTCCTTATAGTCATGCTTCTGTAACTGGTGCAAAGTATT TTCTTACTATAGTTGATGACAAGTCTCGATTTACATGGATTAAGTTGATGAAATCAAAGTCTGAGGCTCGAA
CDS sequence (LotjaGi5g1v0056500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACTCACGCTTCGATCACTGCTGCGAATCTTCAGGATTCAACTCATGATTACTACATTCATCCGAATGAGAATCC GTCTTTGGTGCTTGTGACTCCGATTCTTGATGGAAGCAATTATCACGGTTGGGCTCGTGCGATGGAAATGTCTCTGCAGA TGAAGAACAAGTTTGGTTTTGTGGATGGTTCTATCACCAAGCTTTCTGATACAGATCCTATGCTCTCTGCCTGGAAGCGT TGCAATAATCTTGTTCTTTCATGGATCAATCACTCTATTTCGCATGAGATAGCCACAAGTATCATCTGGATTGATACTGC ATCAGCTGCTTGGAAGGATCTGAAAGATCGTTTTTCACAAGGTGATTCTGTAAGAATCTCTCATCTTCATCATGAATTGT ATTCTCTTAAGCAAGCTGATTTGTCAATTACTGCATATTACACAAAAATGAAGATTCTCTGGGATGAAATGTGCAACTAT AGGCCAATTCCGACTTGTACTTCTTCTGATGCTTGTTGTTGTGAAGCTGTGAAAACCTTTAAGAGGTATCGAGACAATGA TTGTGTACTTTGTTTCCTGCGAGGCCTGAATGATAACTATGCTGCAGCCCGTTCACAAATTTTGCTAATGGATCCTTTAC CTGTTTTGCCAAAGATATTCTCTATGATCATACAGCAGGAGAGACATCTTGGCATAGGAGTGTTGCCAGAACCTGCAGCA ATGGCAGTTCAAACTTCACAATCACAATCGCAGAATGCACAATCTCAGTCATCTGTTTCTAACAAAGGGAAACCGAGTTA CCAAAAATCTTACAACAAGAGCAACAGGCAGTGTACCTATTATGGTAGAAACAATCACACAGTGGAAACTTATTTTCAGA AACATGGATATCCTCCTGGATTTCCAAATGGATATAAGCCAAAGAAGGCTTATCTTGCTGCTTCAGGTGATGATGTTCCT GCTGATGAGGAGCAGTCATCTTCTACAAGTTTGGAACTCACAAGGGAACAACTTCAAGGTCTCTTAGCTTTGCTCCCTTC CTCTAAGCCTACAGCTACTACACATTCTTCTAATCTTGTGAGCAGTCACAATGCTATTTCCAATGCCATAGGACAAGATC ACTTTGAAGATGATTGGGAGAGCTGA
Protein sequence (LotjaGi5g1v0056500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATHASITAANLQDSTHDYYIHPNENPSLVLVTPILDGSNYHGWARAMEMSLQMKNKFGFVDGSITKLSDTDPMLSAWKR CNNLVLSWINHSISHEIATSIIWIDTASAAWKDLKDRFSQGDSVRISHLHHELYSLKQADLSITAYYTKMKILWDEMCNY RPIPTCTSSDACCCEAVKTFKRYRDNDCVLCFLRGLNDNYAAARSQILLMDPLPVLPKIFSMIIQQERHLGIGVLPEPAA MAVQTSQSQSQNAQSQSSVSNKGKPSYQKSYNKSNRQCTYYGRNNHTVETYFQKHGYPPGFPNGYKPKKAYLAASGDDVP ADEEQSSSTSLELTREQLQGLLALLPSSKPTATTHSSNLVSSHNAISNAIGQDHFEDDWES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 22 | 67 | 46 | 1.0E-16 | ||
| PANTHER | 54 | 370 | 317 | 1.5E-76 | – | |
| PANTHER | 54 | 370 | 317 | 1.5E-76 | – | |
| Pfam | 78 | 159 | 82 | 1.2E-7 | – | |
| MobiDBLite | 243 | 275 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0056500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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