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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0060700 |
| Transcript ID | LotjaGi5g1v0060700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065; TrEMBL-Plants: tr|G7I6Z3|G7I6Z3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi5g1v0060700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10186991..10192611) extracted from Lotus japonicus Gifu genome v1.2.
AAATTTCCGTATTCTATTAAAGGGGGGCTTTCCAGTAATTTCCCCACTTTAAGTGGGGCGCGGAGCCCCATAGAGGGCCC AAACCCAATTCCCAAAGGTTAGTTGGACAGCACCATTGAAATGAGGGAGAGAACTGAAACCAAATCTCCATGATCATCAA AACCAAGTTCCCATTCTCACCTTCTTCCACTCCTTCCACACTCACCAATCTCACCCTCCAACTTCCCCCAACCACCACAA GATCAAGAGTTGCAGAACAAACCTGCTTAACTCTCCTCAACTCCTGCACCACCCTCACCACTCTCACCCAAATCCACACC CTCATCCTCAAACTCGGCCTCATCAACAACCCACTCGTTCTCACCAAATTCGCCGCCACCTCCTCCACCTTCAACGCCAT TCACTACGCCACCTCCTTCCTCTTCTCCGATGACCCAACCACCGCGCCTCGCGCTTCCTCCTTCGATGCCTTCCTCTTCA ACACGCTCATCAGGGCCTTCGCTCATACCCCTCAGTCGAAGTCCAGTGGGTTGCAGTTGTACCGGACAATGCTACGTTAC GGCGTCGTGCCCAACAAGTTTACTTACCCGTTTGTGCTCAAGGCCTGCGCTGGACTCAGTGATTTGCGGCTCGGGAAGGC GGTTCATGGGTCTGTTGTGAAGTTCGGGTTTGATGACGATCTTCATGTACAGAACACCATGATTCACATGTATTGTTGCT GTTGTTGTGGTTCTGGTGAAGGTAAAGAAGAGGGAGAAGGGGTTGAGCTTGCAGGCAAGGTGTTTGATGAAAGTCCTAAG ACGGATTCGGTGACGTGGAGTGCTATGATTGGTGGGTACGCGCGTCGCGGACATTCTTCGCGGGCCGTTGGGTTGTTTCG TGAGATGCAAGTAAGCGATTAGGATTCTCTATCTCTCTTTTTGATTTAGAATATTGAGTTTTAAACCCATCACAAGTTGA GGTGAATTAATGGAGCCAATCTTACAGGCTTAATTCTGTTCAATTTTAGCACACTATTATATCGTTGTAAGAAAAAGTAT TGAGTATAATTTTGTTTGATATGATACTTACCACCTGTTTGGATGCAAACAAAGAGCACTTATTGGAGCTTATTTAGTGC ATTTTACAGTAGATAAGCTTCAATAAGCTCATATCGAAACGGGCTCAGACGCTAGGAGATAGAGCTGTATGGAAAATACT TGTGTTATTTCCTGTTTTCATACTTTCTAACTATAAATCAAACGGACTCTTAGACAATTAAGGTTCACCTCATTTGTATG TTATAATTATTGTTTGCATAGGTGTACTTATTTCACAGCTTCTTTAATTTAAATTTGAATTTCTCTCTTTTTAATTATCT TAAATGAGTAGACAGTAAGTATAGGAGGAGGGGGAAAGAAGAAAATAAGTGAGAAGAACATTTCTTACTAAAATGTAGAT GAGTAATTTATTTCTGCATGAACATCTTGCCTCACAAGAAAATGTTTAAGTTGGATGCATATTAAAATAATAATATTAAG AAGTTAATTCAGTCTTATGGATACAGTAAGTGGAACCATCGGAATTGTTGCCCACAGATTATAGTATTAGCCCTGATGAG ATCACCATGGGTTGAGTGATGACCGACTTAAAACCTTGGTGTTTATAAACACTGCGTAGACAAGTATGATTATTTACAAA TAATGCAGGTGATTAATTCTTTTATGAGCAGTTGAGCACACAGAATGTACAATGAAGTAGAAGATGGAGATACATTAACA GAATAATAATAATAATTATAATAAAGACAATATTATTATCAGTGTAGTTATTTTAATATTAAACTTTTATTGGTCGAATC CATACTCATACAATAATTGTTACATACAGGTTATGGGTGTTTGCCCTGATGAGATTACCATGGTTTCTGTTTTGACTGCA TGTGCTGATTTGGGTGCACTTGAACTGGGGAAGTGGTTGGAATCTTATATTGAGTGGAAAAAGATACCAAAGTCCGTGGA GCTCTGTAACGCGTTGATAGACATGTTTGCCAAGTGTGGTGATGTTGATAAAGCTATGAATCTGTTTCGACAAATGGACT CGTGCACCATAGTTTCATGGACTTCAGTAATTGTTGGTCTTGCAATGCACGGTCGTGGGTCAGAGGCTGTTTCCTTATTT GATGAGATGGTTGAACAAGGAGTGGAACCTGATGATGTTTCTTTCATTGGGGTGCTCTCTGCATGTTGTCACTCCAAGCT AGTTGATAAAGGACGTAGTTATTTCAATTCAATGGAAGGGAATTTCGGCATTGTGCCAAAGATAGAACACTATGGATGCA TGGTGGATTTGTTGAGTAGAGCTGGATTTGTCAAAGAGGCATTAGATTTTGTCCGAACTATGCCTGTTGAGCCAAACCAA ATCATCTGGAGAAGCATAATCACTGCATGTCATGCACGCGGGGAACTCAAGTTAGGGGAGAGCATCTCGAAAGAGCTACT GAGAAACGAGCCAACGCATGAATCGAACTATGTTCTGCTCTCAAACATTTATGCGAAATTGCGACGGTGGGAGCAAAAGA CCAAGGTGAGGGAGATGATGGATATGAGAGGGATGAAGAAGGTTCCAGGGAGCACCATGATTGAGCTGAACAACGAAATG TGCGAGTTTGTCGCTGGAGATAAGTCACATGATCAATACAAGCAAATATATGAAATGGTGGATGAGATGGGAAGGGAAAT TAAGAGGGCAGGGTATGTTCCTACAACATCTCAGGTTTTACTTGACATTGATGAAGAAGATAAAGAAGATGCTTTGTATA AGCACAGTGAAAAGCTTGCAATAGCTTTTGCTCTTCTGAACACGCCCCCTGGAACACCAATCAGAATTGTGAAAAACTTG CGCGTTTGTGAAGATTGTCATTCTGCTACTAAGTTCATATCTAAGGTTTATAACCGAGAGATTGTGGTCAGGGACCGCAA TCGCTTCCACCATTTCAAGAATGGTTTGTGTTCATGCGGAGACTTCTGGTAACAAATTGATTACGGCATCAAAGATTCTC TGTTCATGTGCTGAAAGTTTCAATATTAATATACTGGGTAGCATTCTCAAAGTATCAATTTTGTGGAGGGATTCAATCAT GTGCTTTACTAATGTTTGAAATTTGTTAGTTTGTTCAACTGATGTAAAACATGGATGTTGTCCTCGGTCGGTGGCTCTTC CCTTCACAAATATAAATGAAGGCTATGGAGAGTTTTGGTCGCCAAATTTTCATTGTTAGTGAAAAGGCAAGCACTTTTAC ATTGGTTTCATGATGAAGTTGATAAAATCATGTATGTTATTTTGCTTTTCTACAAGGTTAATTCTAAGTGCCAATGCAGG TTGGCACAAATGGTCAAGGATCTGGCAGGGTTGGTGGTTCAATTTCCTTGTACGATTTTGTAAGAAGCAGCAGAAGAATC ACTAATTCCGGGTAATTTTGTGTTTATGCATCCTTGTGAAAATCAAACTCATAGCACTAGCAAAATCGTCAATGCATGCA TATGACAGTAAAGGATGTAAACGTATCTGGTCATTGATCGTAGCTAGTTTTTATTTCAAATGTATTAAAATTGCATTCTC GAGTTAATAACTTCACTTAAGAGATTGTGGCTTTTAATTGATTGATTATTACTTTTCTTTTCATCTAAAATCATTTGGAA CAAACCGAGTGTTTAGTAAAACTTTTTCATAATACTATGTAAATAGACAGCATTAATGATATGCTTCAAACGAGTGGTTA TGGACAAAACTATTTGGGTAATTTGGCCAGCCCCAAAGCGTTTAGGGCGGTGACCTAGGATGAGAGATTAGTCTCATGAC TATCTGTTATGGAATACCTTGATTAAGATAAAAAAAAATATATAGATTATTAGATTTGATTTTATTGCTCCAAAAAATAT CAAATTCTTAAATCCAGGTAGACATGCCTCTTTAGACTTTAGTGATGTAAACAAGTCACACGAGGTGAAATAACATCAGT TGCTGTCCCATGAACATTATGGCATATTGCAGAAGCTGGCTTGTCTAGATCAATTGAGGTAATGTTGATTTGTTGCAGCT TAATATTGTCACACCCTATCTTGGCACAGTCAAGCACAACTGCATGCTCATTGGTACATGTGCCATGTATGTTCCTGAAT GTAACGTCAGTAACTTCTAATGCTTCCTTCTGCAGCCAAAATAAAAGGGGGAAACTATGATGCAGATTGTCACCAAACAA ATCAACAAATAACAAGCAATAAGAAAGAATGTTAACCTTTTCTGGAGTCCTCATGTAATGTTGGTCAATATACACCGGGT AATTTGTTTGATTCACTATGATATTCTCGTAGATGATAGCCTTGGCGTACCCTTTTCCACCCTTCATAGTAAGTAGAAAG CATTTTTATTAATTAAATTTAAAATACAAATATATTATTGTAAATTATTTAGAAAAAAACTAGCAAAGTACAGCTTAATA CTCTTTTCGTTATATTCATTTTTCATAGTTCAAATTAATATCAGATCTACTAAATTATACAGCTCCATTCTCATTTTGTC GGATCATGCTTGAAATTTAATATAAATTTCTACTTAATAAAAAAGTTATAATGGAAAGAATGTATTAGAAAGTGGTAGCA TTTACCGGCCATGTTTTGATTCTAGCTGCACTATCACCTCCATTGAATGTGCAATTCCTAACATTCACATGTTCTGCGAA TTCCTCTTCTCCATTTTCCCCTAGACTCCCCACACTGCATCAAAATTGAAAATTTTAAGGCATGCGGACAAATTACTCAT TTATAAAACTTCAATTTTGGGTGAAAAAGATTTTTTTAATTTTTGCAAATCTAAGTCCCCTAACTTGTGCATATATGGCA AGGTCAGATGGTAACAATATTGACAAACCTAATCCCGTGACCAGGTCCACAAGTAACATGGCTAATGTTGATGAATCGTG AGCCACCTTTGATGGCAATACAGTCATCACCTAAAATCACACACGCAACACATAGATCAAAATTGTAGAATTACCTACTT AGAGAGAAACAATCTGCAAAAATAAGGGCAAGATCAGAAAATGATAATTAGTGGGTGAAGGTTTATGTGAAACATGTATA TTTACCGCTCCCTATTATTGAGTTACGAATGTTAACCCGAACTGTGTTTGAGATATCAATTCCATCAGTGTTGTGACTAA TTCCTTTTGGTGAATTTATGTGAACTCCTGAGATTGTTACATCTCGGCTGTGAACCACAAAGATATGCGATGCTGGCCCG TTTATGTGAGTGAGTCTACTTATTTGAAGCCCATCACATCTTTCAAATAGCAGAGCCTGCAAATTCTCCATTGCAAACAT ATCACTATTATTTGAACCAAAAAAAAACTTCTTATCAGGTAATTTTACAGTGAATTATGTTAAAAAATGGTTCACCGATT GCCATGTTTTTACTTATTATAAATGATATTCTATGGTGGACCTGGACCATGTGAAAAATAGGTCATTTATGAATTATATT TTTACCACTAACATCTAGTATATGTTATTTATAATATGTTCCTTATATATATTGCAGAAAGTTTTTTTTAACTTGTGAAA GAGATTTGTTTGAGTCATGAT
CDS sequence (LotjaGi5g1v0060700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCATCAAAACCAAGTTCCCATTCTCACCTTCTTCCACTCCTTCCACACTCACCAATCTCACCCTCCAACTTCCCCC AACCACCACAAGATCAAGAGTTGCAGAACAAACCTGCTTAACTCTCCTCAACTCCTGCACCACCCTCACCACTCTCACCC AAATCCACACCCTCATCCTCAAACTCGGCCTCATCAACAACCCACTCGTTCTCACCAAATTCGCCGCCACCTCCTCCACC TTCAACGCCATTCACTACGCCACCTCCTTCCTCTTCTCCGATGACCCAACCACCGCGCCTCGCGCTTCCTCCTTCGATGC CTTCCTCTTCAACACGCTCATCAGGGCCTTCGCTCATACCCCTCAGTCGAAGTCCAGTGGGTTGCAGTTGTACCGGACAA TGCTACGTTACGGCGTCGTGCCCAACAAGTTTACTTACCCGTTTGTGCTCAAGGCCTGCGCTGGACTCAGTGATTTGCGG CTCGGGAAGGCGGTTCATGGGTCTGTTGTGAAGTTCGGGTTTGATGACGATCTTCATGTACAGAACACCATGATTCACAT GTATTGTTGCTGTTGTTGTGGTTCTGGTGAAGGTAAAGAAGAGGGAGAAGGGGTTGAGCTTGCAGGCAAGGTGTTTGATG AAAGTCCTAAGACGGATTCGGTGACGTGGAGTGCTATGATTGGTGGGTACGCGCGTCGCGGACATTCTTCGCGGGCCGTT GGGTTGTTTCGTGAGATGCAAGTTATGGGTGTTTGCCCTGATGAGATTACCATGGTTTCTGTTTTGACTGCATGTGCTGA TTTGGGTGCACTTGAACTGGGGAAGTGGTTGGAATCTTATATTGAGTGGAAAAAGATACCAAAGTCCGTGGAGCTCTGTA ACGCGTTGATAGACATGTTTGCCAAGTGTGGTGATGTTGATAAAGCTATGAATCTGTTTCGACAAATGGACTCGTGCACC ATAGTTTCATGGACTTCAGTAATTGTTGGTCTTGCAATGCACGGTCGTGGGTCAGAGGCTGTTTCCTTATTTGATGAGAT GGTTGAACAAGGAGTGGAACCTGATGATGTTTCTTTCATTGGGGTGCTCTCTGCATGTTGTCACTCCAAGCTAGTTGATA AAGGACGTAGTTATTTCAATTCAATGGAAGGGAATTTCGGCATTGTGCCAAAGATAGAACACTATGGATGCATGGTGGAT TTGTTGAGTAGAGCTGGATTTGTCAAAGAGGCATTAGATTTTGTCCGAACTATGCCTGTTGAGCCAAACCAAATCATCTG GAGAAGCATAATCACTGCATGTCATGCACGCGGGGAACTCAAGTTAGGGGAGAGCATCTCGAAAGAGCTACTGAGAAACG AGCCAACGCATGAATCGAACTATGTTCTGCTCTCAAACATTTATGCGAAATTGCGACGGTGGGAGCAAAAGACCAAGGTG AGGGAGATGATGGATATGAGAGGGATGAAGAAGGTTCCAGGGAGCACCATGATTGAGCTGAACAACGAAATGTGCGAGTT TGTCGCTGGAGATAAGTCACATGATCAATACAAGCAAATATATGAAATGGTGGATGAGATGGGAAGGGAAATTAAGAGGG CAGGGTATGTTCCTACAACATCTCAGGTTTTACTTGACATTGATGAAGAAGATAAAGAAGATGCTTTGTATAAGCACAGT GAAAAGCTTGCAATAGCTTTTGCTCTTCTGAACACGCCCCCTGGAACACCAATCAGAATTGTGAAAAACTTGCGCGTTTG TGAAGATTGTCATTCTGCTACTAAGTTCATATCTAAGGTTTATAACCGAGAGATTGTGGTCAGGGACCGCAATCGCTTCC ACCATTTCAAGAATGGTTTGTGTTCATGCGGAGACTTCTGGTAA
Protein sequence (LotjaGi5g1v0060700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIIKTKFPFSPSSTPSTLTNLTLQLPPTTTRSRVAEQTCLTLLNSCTTLTTLTQIHTLILKLGLINNPLVLTKFAATSST FNAIHYATSFLFSDDPTTAPRASSFDAFLFNTLIRAFAHTPQSKSSGLQLYRTMLRYGVVPNKFTYPFVLKACAGLSDLR LGKAVHGSVVKFGFDDDLHVQNTMIHMYCCCCCGSGEGKEEGEGVELAGKVFDESPKTDSVTWSAMIGGYARRGHSSRAV GLFREMQVMGVCPDEITMVSVLTACADLGALELGKWLESYIEWKKIPKSVELCNALIDMFAKCGDVDKAMNLFRQMDSCT IVSWTSVIVGLAMHGRGSEAVSLFDEMVEQGVEPDDVSFIGVLSACCHSKLVDKGRSYFNSMEGNFGIVPKIEHYGCMVD LLSRAGFVKEALDFVRTMPVEPNQIIWRSIITACHARGELKLGESISKELLRNEPTHESNYVLLSNIYAKLRRWEQKTKV REMMDMRGMKKVPGSTMIELNNEMCEFVAGDKSHDQYKQIYEMVDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYKHS EKLAIAFALLNTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| PANTHER | 92 | 286 | 195 | 5.2E-89 | – | |
| ProSiteProfiles | 106 | 141 | 36 | 9.624 | ||
| ProSiteProfiles | 142 | 176 | 35 | 5.908 | ||
| Gene3D | 149 | 275 | 127 | 3.7E-19 | ||
| Pfam | 219 | 266 | 48 | 4.1E-11 | ||
| ProSiteProfiles | 219 | 253 | 35 | 12.485 | ||
| TIGRFAM | 221 | 255 | 35 | 2.3E-8 | ||
| ProSiteProfiles | 254 | 288 | 35 | 5.185 | ||
| PANTHER | 273 | 493 | 221 | 5.2E-89 | – | |
| Gene3D | 276 | 385 | 110 | 1.1E-27 | ||
| ProSiteProfiles | 289 | 319 | 31 | 9.591 | ||
| TIGRFAM | 292 | 318 | 27 | 1.0E-5 | ||
| Pfam | 293 | 316 | 24 | 6.3E-6 | ||
| ProSiteProfiles | 320 | 354 | 35 | 11.915 | ||
| Pfam | 321 | 368 | 48 | 9.1E-12 | ||
| TIGRFAM | 322 | 355 | 34 | 1.2E-8 | ||
| ProSiteProfiles | 355 | 385 | 31 | 7.07 | ||
| TIGRFAM | 358 | 390 | 33 | 9.5E-4 | ||
| Gene3D | 386 | 563 | 178 | 1.2E-12 | ||
| ProSiteProfiles | 391 | 421 | 31 | 6.752 | ||
| Pfam | 394 | 418 | 25 | 0.12 | ||
| ProSiteProfiles | 423 | 453 | 31 | 5.864 | ||
| ProSiteProfiles | 457 | 491 | 35 | 6.588 | ||
| Pfam | 493 | 617 | 125 | 5.1E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0060700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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