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LotjaGi5g1v0061500.2

Overview

Field Value
Gene ID LotjaGi5g1v0061500
Transcript ID LotjaGi5g1v0061500.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:10279949..10280547) extracted from Lotus japonicus Gifu genome v1.2.

GATGTCTTGGTAGTGTCTTGTATCTTTGAATGAGTAATCAGATCTATAACTGAGTTAGGACTTTTGTCTTTCCACTACTA GTTTTTGTGAGATTAGGGTGGCAGCAAAGTACCTGTGAGTAATCATAACCAATGTTACAAGTGGTGAAGTTTTTTTTTTA TTCTTGGAATTGTGAAATTTTTCCTGGTTTTAAAAGCCTGCTGGATTTTGTGTATGTTTGTTTAGAAGTCCCTTGTATGT TGTTATAATGTTAATTCGTTTATTATCATCTGGTGTGTCATCATGAATATCTCTTGATACAGTTCCCTGTTGGACGAATT CACCGTCTTCTGAAGACAAGGGTGTCGGCGAATGGAAGAGTTGGGGCAACAGCTGCAGTTTACACTGCTGCTATCCTGGA GTACTTAACTGCGGAGGTGTTGGAGTTGGCCGGCAATGCGAGCAAGGATCTGAAGGTGAAGCGCATTACCCCAAGACATC TTCAGCTTGCAATCCGCGGAGACGAAGAACTAGATACCCTCATCAAAGGAACTATAGCTGGTGGTGGTGTTATTCCTCAT ATCCACAAGTCTCTTATCAACAAATCTTCAAAGGAATGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0061500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTACAATTCCCTGTTGGACGAATTCACCGTCTTCTGAAGACAAGGGTGTCGGCGAATGGAAGAGTTGGGGCAACAGC TGCAGTTTACACTGCTGCTATCCTGGAGTACTTAACTGCGGAGGTGTTGGAGTTGGCCGGCAATGCGAGCAAGGATCTGA AGGTGAAGCGCATTACCCCAAGACATCTTCAGCTTGCAATCCGCGGAGACGAAGAACTAGATACCCTCATCAAAGGAACT ATAGCTGGTGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAATCTTCAAAGGAATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0061500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLQFPVGRIHRLLKTRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGT IAGGGVIPHIHKSLINKSSKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.20.10
1 101 101 1.4E-46
IPR009072
PANTHER
PTHR23430:SF279
2 101 100 4.1E-68 –
SUPERFAMILY
SSF47113
2 78 77 3.32E-34
IPR009072
SMART
SM00414
2 101 100 2.0E-53
IPR002119
CDD
cd00074
2 97 96 3.44367E-53
IPR002119
PANTHER
PTHR23430
2 101 100 4.1E-68 –
Pfam
PF00125
3 70 68 1.9E-16
IPR007125
PRINTS
PR00620
22 37 16 1.5E-27
IPR002119
PRINTS
PR00620
37 50 14 1.5E-27
IPR002119
PRINTS
PR00620
51 65 15 1.5E-27
IPR002119
Pfam
PF16211
71 100 30 5.2E-11
IPR032454
PRINTS
PR00620
78 96 19 1.5E-27
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0061500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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