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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0061500 |
| Transcript ID | LotjaGi5g1v0061500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|O23628|H2AV1_ARATH Histone H2A variant 1; TrEMBL-Plants: tr|A0A164U3L0|A0A164U3L0_DAUCA Histone H2A; Found in the gene: LotjaGi5g1v0061500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10279994..10280547) extracted from Lotus japonicus Gifu genome v1.2.
ATAACTGAGTTAGGACTTTTGTCTTTCCACTACTAGTTTTTGTGAGATTAGGGTGGCAGCAAAGTACCTGTGAGTAATCA TAACCAATGTTACAAGTGGTGAAGTTTTTTTTTTATTCTTGGAATTGTGAAATTTTTCCTGGTTTTAAAAGCCTGCTGGA TTTTGTGTATGTTTGTTTAGAAGTCCCTTGTATGTTGTTATAATGTTAATTCGTTTATTATCATCTGGTGTGTCATCATG AATATCTCTTGATACAGTTCCCTGTTGGACGAATTCACCGTCTTCTGAAGACAAGGGTGTCGGCGAATGGAAGAGTTGGG GCAACAGCTGCAGTTTACACTGCTGCTATCCTGGAGTACTTAACTGCGGAGGTGTTGGAGTTGGCCGGCAATGCGAGCAA GGATCTGAAGGTGAAGCGCATTACCCCAAGACATCTTCAGCTTGCAATCCGCGGAGACGAAGAACTAGATACCCTCATCA AAGGAACTATAGCTGGTGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAATCTTCAAAGGAATGA
CDS sequence (LotjaGi5g1v0061500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTACAAGTGTTCCCTGTTGGACGAATTCACCGTCTTCTGAAGACAAGGGTGTCGGCGAATGGAAGAGTTGGGGCAAC AGCTGCAGTTTACACTGCTGCTATCCTGGAGTACTTAACTGCGGAGGTGTTGGAGTTGGCCGGCAATGCGAGCAAGGATC TGAAGGTGAAGCGCATTACCCCAAGACATCTTCAGCTTGCAATCCGCGGAGACGAAGAACTAGATACCCTCATCAAAGGA ACTATAGCTGGTGGTGGTGTTATTCCTCATATCCACAAGTCTCTTATCAACAAATCTTCAAAGGAATGA
Protein sequence (LotjaGi5g1v0061500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQVFPVGRIHRLLKTRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG TIAGGGVIPHIHKSLINKSSKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 102 | 102 | 9.9E-52 | ||
| Gene3D | 2 | 102 | 101 | 2.0E-45 | ||
| SUPERFAMILY | 4 | 79 | 76 | 6.29E-33 | ||
| Pfam | 4 | 71 | 68 | 3.8E-16 | ||
| PANTHER | 5 | 102 | 98 | 2.5E-67 | – | |
| PANTHER | 5 | 102 | 98 | 2.5E-67 | – | |
| CDD | 5 | 98 | 94 | 1.44449E-51 | ||
| PRINTS | 23 | 38 | 16 | 1.6E-27 | ||
| PRINTS | 38 | 51 | 14 | 1.6E-27 | ||
| PRINTS | 52 | 66 | 15 | 1.6E-27 | ||
| Pfam | 72 | 101 | 30 | 5.3E-11 | ||
| PRINTS | 79 | 97 | 19 | 1.6E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi5g1v0061500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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