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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0062700 |
| Transcript ID | LotjaGi5g1v0062700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosynthetic NDH subcomplex B 3; TAIR: AT4G32590.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SH71|I3SH71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0062700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10551915..10555689) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTAACGACTAACGAGAGTTTTTTTTTTTGAAAGTGACTCATGAGAGTTCTAGAGTTGCAATAAAGATACATGGATTT TAAATAAGAAATTGGAGCATGAGAAACTTTATACATACACATCATCTATACATCTGTTATTGACAATCCTCACAGGAGAA AGAGAAGTGGGTGCAAACCAAACACCGCATAAAGAGAATGTCTTCTATGAATATATTCACCCCCATTCCACTCACCAGTG GCTCCCGGAATCCAACCAACTATTTTCCCCGGCTGCAACGACCCAACTCAGTGCTTTTCGCGGTGAATTCACCACCACCA CCACCACCATCTCCTCCTGAAATAGAGCTCGAGTTCATTGGGGTACGTATTGTCTCTAAATCCTATCTTAAATTTTGGAC ACAGATTCTCTCTCACAAACACACACACATTACTACATTAGTATCATGTTTATGTTAACACACACATTCAATTGTACTAT TGTGATTTCTTCTAGTTAGTGTGGCATTAGAATTATAATTGAAGTTGAAATAATGGAACTGAAATTAATTGTTGCAGCCA AAGGGGGAAGGTGATCTGGATAAAGCAAAAGCGATCAGCGGAGCGAAGCTGTTGAGGAACATCATGTTGGATAACAAGAT CGAGCTTTATGCCACTTATGTAAGTCTCATACCACATATTTTCCAATCAATCACAACCACTCGATCGCTAACATAACATG TAGTCATGTACTCTTCCTTTTTCCTTTTTTTATTTATTTATTAGATTAGATTTAAATATGTGTGTGTTTTTAATCTTCAT CAATATACTAAACTTTTATATTTATTGTCATAAAGTTCGATTGACTCATTGTCTAGGTTGATGTTCGATTTCTAACACTT GTAAATGAAAAATAATTTATTTGTCAGCCACAATCGGTTGGGTGATAAATTAGTCTCGTGACTAGTGATTGAGAGAATAT CTTACCAAAAGTCAAATTTAATTGTTTTATTTATAATTATCATAGACATAGTTTTTTCTTTATAAGCATTGTCATAGACA TAGTATTTAATATTAGTTATAACCAATTGTTTTAACAGGGGAAGTTGATGAACTGTGGTGGAGGTGGTAGCTGTGGAACT TGTATCGTAGAGGTACATAATTTGTTAATTTCGTATTGTTCACATTTACTTAGCAATAGAATAATCTAAGTCGGAAATTC TAGCGGAAGTAGGATTTTCCTGATAACCTAACTGCTTTTGGTATAGAATGAATCAATCCCCTTTTCAAGATGCAAACTTT TCTTGTTTATGGAGGATAGGCGCAAAAACCTTGGTTTAATATCTAATATGGACTCGCTCTGAGCTTTTACGGGTTGTCAA CTAGACATGCCTCGTTTCTGAATGAGATGAGACGCCTAAATAAACTCCTAGCTCATCGCGCATGTGATTGTTTGCCACAT GAGAGAGTTCCAAAGTAGGCGCTCCCTCGATCTAAGTTCCGGTCGCCAGATACGCTATAGTAGTTCATGACCCGCTCTTG AGTCCATTTTCACAAGACTCTCTACTCACCATAGTCACAACCATTTGGAGTGAGATAATTGCTTCGCCTAAGCTTTCTTA ATGTTCCAAAGTAGGCGCTTCCACAAACCCTCGCTAAGCACCCTCCCAATGTGTCTAATAGATTTAATATGAAAAAAAAG AAATGAAAATAGGTCTAAAGGTTTTATTAAGTATGGTCACGACACGAGCGTGATTGCCCCCACACACAGGTGCGATTGCC CCCACATACGGGTGAGGTCGCCCCAACTTAAGCAGAAAATAGTGCTGAAACATGTGACAACAACGTGAGTACTGTGCCTA GGCTTCGGCGTGGCCGCGCTGGCCTTGGCAGAGAGAGTAATGAAAAATGCACTGGGGATTTGATTTCATTTACTCTTAAG TCTTAACTATGCTTGAACTTCCCTGCGCTTGTTACAAAATTGAAAACTAGGATGCGCTTGTTACAAAATTGAAACTAGGA TTCCCCGTATAAATCATTCATAAGAATAAAATAACTTACAATTTCCTTAATTCCCTTCAATTTGATTCTTATAAAACGGA TTGAGAACCTTACATTTTTATGGGAAGATGAATGTAACTTTCCACTTCTCTCACATTCTATCAATTTTTCTGTTTTTTTA TATTTTCAATTAAATAAAATTTATAAATATTCTTTAAAATACTAATTGCTTATCAAACACATTTATAAATTTTGTTCGGG AATAACATCCCCATTAATCATATTTCCGGGAATGTTATTTCTAGGAATGTGTTCTTAAACCTTAAAAACATCTGGTATCA TTTGGATGCCGTCGGATTTAGGATTTAGTCACAATTAAGGCTTCTCATCCCCTTCCCAGAGTATATTGTGTGAGGAACTG AGGATAAACCTAAGAGTTCTTCCCACACACTCAGTCTGCGTTGTCAACTGAGCTACGTATACCCCTCTTGGGTCCATGCT TTGAAAGGCATAGTCGTCACCGCGTTTTACATGATATATATAATAAGGTTCTAGTTTTCACAAAATATTTATTCATTAAT CTCTAATTGCATGTACGTATTGATTCGTGTATGTGTTGCAGATTATTGAAGGAGACGATCTTTTAAATGAAAGAACAAAT ACTGAACTCCGATATCTTAAGAAGGCATGCTCTCTCTCTCTCTCATTGAACCCTTTCTTTGTAGTGAATTTCGAAGTATT GGTGATTTAACGTTGCAATCCTTTCTTGAAATTACCTAATCTTTTGAAGTTTGATTTCTCTCTGAACAGAAACCGGAATC TTGGAGGTTGGCTTGTCAAACTATTGTTGGAAACAAAGAAAACTGTGGCAAGGTATCTTCCAAAATCATGGATATATAGG ATAAGATTATAAGGGTTGTTTAAGGTAAACTAGCAAAATAAATACGCGAATTGAATGACACAGTTTTTTTTGCCGTCTAA ATGACCAATGAGAAAATTTGGGTTAAATAACTCATCGTCCAATCATATTGAAGATAAGTGAGTTGAAATTTCAATATTTT ATTTATTAATTTATTTATAAAAAATCTTATTAGTCCATGGAGTTGTGAATTAGTTACCCACATGACTTACAATTTTTTTG ACGGTAAGAATTGAAGGACACATTGCTTCTACTTATAAAGTAGTTTAACATAAATAAAGCTTGTATCTTATTATGGAGTT TGAAATAAGTTAAAAACTTTTTTATCACAATTTATAACTCATGTAACTTTGAACCACTAGCTTATTCTATTTATATTATA CTCTTGTATCTTAAACAACCTCACACAAAGTGACGGTTAGGTGGTTTAATTCACTTTACAATTGTCAATTTTAGATACAA TTGATTTGTTGTAGTTCTAGTGGATTTATACGTTTGCTATTATGGGCATCTTAGGTTGTTGTTCAAAGGATTCCTCAGTG GAAGAAGTAACACACCAAGCCAAGCAGCGCATCTTGGATTTTATCCAGTTGACCAATTGGAAGCTTATGGCATACATCAA ATATAAACTCTCTCAGGAAGCATTTTTTATGTGATACAAATCCTCAATTAAAAGTTATTTGATGATCACATGATTTTTTA AAAGAACATTGATTTTGTGTTTCGATCGATGAAGACAACTTATGGTTCGATCTAATTATTAAGATTTATTCATCTGATCG ATCATCTCTCATGATAAGAAGTCCTCCTACTTGATAGTGATACGTCTTCTCTTTATGTATTTTTATTTTAAAGATAAAGT AATATATTATATAAA
CDS sequence (LotjaGi5g1v0062700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTATGAATATATTCACCCCCATTCCACTCACCAGTGGCTCCCGGAATCCAACCAACTATTTTCCCCGGCTGCA ACGACCCAACTCAGTGCTTTTCGCGGTGAATTCACCACCACCACCACCACCATCTCCTCCTGAAATAGAGCTCGAGTTCA TTGGGCCAAAGGGGGAAGGTGATCTGGATAAAGCAAAAGCGATCAGCGGAGCGAAGCTGTTGAGGAACATCATGTTGGAT AACAAGATCGAGCTTTATGCCACTTATGGGAAGTTGATGAACTGTGGTGGAGGTGGTAGCTGTGGAACTTGTATCGTAGA GATTATTGAAGGAGACGATCTTTTAAATGAAAGAACAAATACTGAACTCCGATATCTTAAGAAGAAACCGGAATCTTGGA GGTTGGCTTGTCAAACTATTGTTGGAAACAAAGAAAACTGTGGCAAGGTTGTTGTTCAAAGGATTCCTCAGTGGAAGAAG TAA
Protein sequence (LotjaGi5g1v0062700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSMNIFTPIPLTSGSRNPTNYFPRLQRPNSVLFAVNSPPPPPPSPPEIELEFIGPKGEGDLDKAKAISGAKLLRNIMLD NKIELYATYGKLMNCGGGGSCGTCIVEIIEGDDLLNERTNTELRYLKKKPESWRLACQTIVGNKENCGKVVVQRIPQWKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 160 | 120 | 3.6E-56 | – | |
| PANTHER | 41 | 160 | 120 | 3.6E-56 | – | |
| Gene3D | 57 | 160 | 104 | 4.1E-18 | ||
| SUPERFAMILY | 73 | 143 | 71 | 4.58E-15 | ||
| Pfam | 92 | 141 | 50 | 7.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. |
Expression pattern of LotjaGi5g1v0062700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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