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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001041
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We have found 44 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.401s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0323599.1
n.a. PREDICTED: ferredoxin-2-like [Cicer arietinum] gi|502152646|ref|XP_004509024.1| chr0 169008180 169018845 +
5 domain predictions
2 GO terms
Lj0g3v0336509.1
n.a. succinate dehydrogenase [Mangifera indica] gi|107770481|gb|ABF83897.1| chr0 176211857 176212009 +
2 domain predictions
2 GO terms
Lj0g3v0336519.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr0 176212005 176212349 +
2 domain predictions
2 GO terms
Lj1g3v3597210.1
n.a. PREDICTED: adrenodoxin-like protein, mitochondrial-like [Cicer arietinum] gi|502103229|ref|XP_004492232.1| chr1 41395355 41396799 +
2 domain predictions
2 GO terms
Lj1g3v3740570.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 42988414 42994267 +
4 domain predictions
2 GO terms
Lj1g3v3751710.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 43041544 43045809 -
4 domain predictions
2 GO terms
Lj1g3v3751710.2
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr1 43043427 43045809 -
4 domain predictions
2 GO terms
Lj1g3v3906720.1
n.a. PREDICTED: ferredoxin-like [Cicer arietinum] gi|502159000|ref|XP_004511360.1| chr1 45566550 45567304 -
2 domain predictions
2 GO terms
Lj1g3v4897990.1
n.a. PREDICTED: ferredoxin-3, chloroplastic-like isoform X1 [Cicer arietinum] gi|502120992|ref|XP_004497151.1| chr1 59371732 59373840 +
5 domain predictions
2 GO terms
Lj3g3v1694660.1
n.a. PREDICTED: xanthine dehydrogenase 1-like isoform X2 [Cicer arietinum] gi|502081768|ref|XP_004486962.1| chr3 21618391 21625497 -
4 domain predictions
2 GO terms
Lj3g3v2994500.2
n.a. Ferredoxin-6 [Medicago truncatula] gi|357471641|ref|XP_003606105.1| chr3 37106188 37106755 -
4 domain predictions
2 GO terms
Lj4g3v0485140.1
n.a. PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1| chr4 7960029 7960773 -
3 domain predictions
2 GO terms
Lj4g3v2215060.1
n.a. PREDICTED: 2Fe-2S ferredoxin-like [Glycine max] gi|356547972|ref|XP_003542378.1| chr4 30507829 30510548 -
5 domain predictions
2 GO terms
Lj4g3v2690750.1
n.a. 2Fe-2S ferredoxin-like superfamily protein, A,ATFD2 [Theobroma cacao] gi|508706205|gb|EOX98101.1| chr4 36223875 36225098 -
5 domain predictions
2 GO terms
Lj4g3v3096070.1
n.a. PREDICTED: 2Fe-2S ferredoxin-like isoform X1 [Cicer arietinum] gi|502080842|ref|XP_004486700.1| chr4 41100854 41104703 -
5 domain predictions
2 GO terms
Lj5g3v0550180.1
n.a. Electron carrier/ electron transporter/ iron ion binding protein [Medicago truncatula] gi|357436821|ref|XP_003588686.1| chr5 6524561 6528131 -
3 domain predictions
2 GO terms
Lj6g3v0409410.1
n.a. PREDICTED: NADH dehydrogenase [ubiquinone] gi|356539814|ref|XP_003538388.1| chr6 3708763 3714644 -
4 domain predictions
2 GO terms
Lj6g3v2274750.2
n.a. PREDICTED: ferredoxin-1, chloroplastic-like [Cicer arietinum] gi|502076836|ref|XP_004485473.1| chr6 26583174 26584985 +
5 domain predictions
2 GO terms
LotjaGi1g1v0059700.1
n.a. Aldehyde oxidase; TAIR: AT3G43600.1 aldehyde oxidase 2; Swiss-Prot: sp|Q7G192|ALDO2_ARATH Indole-3-acetaldehyde oxidase; TrEMBL-Plants: tr|A0A1J7IPN3|A0A1J7IPN3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059700 LjG1.1_chr1 8322214 8331842 +
3 domain predictions
2 GO terms
LotjaGi1g1v0059900.1
n.a. Aldehyde oxidase; TAIR: AT3G43600.1 aldehyde oxidase 2; Swiss-Prot: sp|Q7G192|ALDO2_ARATH Indole-3-acetaldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059900 LjG1.1_chr1 8348168 8357495 +
3 domain predictions
2 GO terms
LotjaGi1g1v0059900.2
n.a. Aldehyde oxidase; TAIR: AT3G43600.1 aldehyde oxidase 2; Swiss-Prot: sp|Q7G192|ALDO2_ARATH Indole-3-acetaldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059900 LjG1.1_chr1 8348335 8356777 +
3 domain predictions
2 GO terms
LotjaGi1g1v0060000.1
n.a. Aldehyde oxidase; TAIR: AT2G27150.1 abscisic aldehyde oxidase 3; Swiss-Prot: sp|Q7G9P4|ALDO3_ARATH Abscisic-aldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0060000 LjG1.1_chr1 8360608 8369978 +
3 domain predictions
2 GO terms
LotjaGi1g1v0060000.4
n.a. Aldehyde oxidase; TAIR: AT2G27150.1 abscisic aldehyde oxidase 3; Swiss-Prot: sp|Q7G9P4|ALDO3_ARATH Abscisic-aldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0060000 LjG1.1_chr1 8360639 8369316 +
3 domain predictions
2 GO terms
LotjaGi1g1v0218600_LC.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0L9UIZ5|A0A0L9UIZ5_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0218600_LC LjG1.1_chr1 48345422 48345950 +
2 domain predictions
2 GO terms
LotjaGi1g1v0616900.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900 LjG1.1_chr1 116347831 116354076 +
3 domain predictions
2 GO terms
LotjaGi1g1v0616900.2
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900 LjG1.1_chr1 116348266 116353523 +
3 domain predictions
2 GO terms
LotjaGi1g1v0617600.1
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116432456 116441491 -
3 domain predictions
2 GO terms
LotjaGi1g1v0617600.2
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116437122 116441459 -
3 domain predictions
2 GO terms
LotjaGi1g1v0617600.3
n.a. Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600 LjG1.1_chr1 116437230 116441401 -
3 domain predictions
2 GO terms
LotjaGi1g1v0765600.1
n.a. Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8M2|I3S8M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0765600 LjG1.1_chr1 133884065 133886884 +
4 domain predictions
2 GO terms
LotjaGi1g1v0765600.2
n.a. Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8M2|I3S8M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0765600 LjG1.1_chr1 133885718 133886182 +
4 domain predictions
2 GO terms
LotjaGi3g1v0019600.1
n.a. Photosynthetic NDH subcomplex B 3; TAIR: AT3G16250.1 NDH-dependent cyclic electron flow 1; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SQH3|I3SQH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0019600 LjG1.1_chr3 2038382 2041000 +
3 domain predictions
2 GO terms
LotjaGi3g1v0288100.1
n.a. Xanthine dehydrogenase; TAIR: AT4G34890.1 xanthine dehydrogenase 1; Swiss-Prot: sp|Q8GUQ8|XDH1_ARATH Xanthine dehydrogenase 1; TrEMBL-Plants: tr|A0A0B2RE38|A0A0B2RE38_GLYSO Xanthine dehydrogenase; Found in the gene: LotjaGi3g1v0288100 LjG1.1_chr3 58227435 58254190 +
3 domain predictions
2 GO terms
LotjaGi3g1v0288100.4
n.a. Xanthine dehydrogenase; TAIR: AT4G34890.1 xanthine dehydrogenase 1; Swiss-Prot: sp|Q8GUQ8|XDH1_ARATH Xanthine dehydrogenase 1; TrEMBL-Plants: tr|A0A0R0G5H5|A0A0R0G5H5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0288100 LjG1.1_chr3 58227777 58253962 +
3 domain predictions
2 GO terms
LotjaGi3g1v0288100.5
n.a. Xanthine dehydrogenase/oxidase; TAIR: AT4G34890.1 xanthine dehydrogenase 1; Swiss-Prot: sp|Q8GUQ8|XDH1_ARATH Xanthine dehydrogenase 1; TrEMBL-Plants: tr|A0A0B2RM17|A0A0B2RM17_GLYSO Xanthine dehydrogenase; Found in the gene: LotjaGi3g1v0288100 LjG1.1_chr3 58227777 58253962 +
3 domain predictions
2 GO terms
LotjaGi3g1v0477000.1
n.a. Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8K1|I3S8K1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0477000 LjG1.1_chr3 89355985 89358511 -
4 domain predictions
2 GO terms
LotjaGi3g1v0477000.2
n.a. Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8K1|I3S8K1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0477000 LjG1.1_chr3 89356672 89357139 -
4 domain predictions
2 GO terms
LotjaGi4g1v0188100.1
n.a. Ferredoxin family protein; TAIR: AT1G32550.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|P08451|FER2_SYNP6 Ferredoxin-2; TrEMBL-Plants: tr|G7JGG5|G7JGG5_MEDTR 2Fe-2S ferredoxin superfamily protein; Found in the gene: LotjaGi4g1v0188100 LjG1.1_chr4 42848556 42859979 -
4 domain predictions
2 GO terms
LotjaGi4g1v0320900.1
n.a. 2Fe-2S ferredoxin; TAIR: AT4G21090.1 MITOCHONDRIAL FERREDOXIN 2; Swiss-Prot: sp|Q8S904|MFDX2_ARATH Adrenodoxin-like protein 2, mitochondrial; TrEMBL-Plants: tr|A0A067KCK0|A0A067KCK0_JATCU Uncharacterized protein; Found in the gene: LotjaGi4g1v0320900 LjG1.1_chr4 69868317 69870825 +
4 domain predictions
2 GO terms
LotjaGi4g1v0387900.1
n.a. Ferredoxin; TAIR: AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q43517|FER1_SOLLC Ferredoxin-1, chloroplastic; TrEMBL-Plants: tr|I3S4Y2|I3S4Y2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0387900 LjG1.1_chr4 76632797 76634063 -
4 domain predictions
2 GO terms
LotjaGi4g1v0451800.1
n.a. 2Fe-2S ferredoxin; TAIR: AT4G21090.1 MITOCHONDRIAL FERREDOXIN 2; Swiss-Prot: sp|Q8S904|MFDX2_ARATH Adrenodoxin-like protein 2, mitochondrial; TrEMBL-Plants: tr|I3SN88|I3SN88_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0451800 LjG1.1_chr4 82396404 82400462 -
4 domain predictions
2 GO terms
LotjaGi5g1v0062700.1
n.a. Photosynthetic NDH subcomplex B 3; TAIR: AT4G32590.4 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SH71|I3SH71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0062700 LjG1.1_chr5 10551898 10555707 -
2 domain predictions
2 GO terms
LotjaGi5g1v0062700.2
n.a. Photosynthetic NDH subcomplex B 3; TAIR: AT4G32590.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SH71|I3SH71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0062700 LjG1.1_chr5 10551915 10555689 -
2 domain predictions
2 GO terms
LotjaGi6g1v0054900.1
n.a. NADH-ubiquinone oxidoreductase subunit; TAIR: AT5G37510.1 NADH-ubiquinone dehydrogenase; Swiss-Prot: sp|Q43644|NDUS1_SOLTU NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial; TrEMBL-Plants: tr|A0A0S3RZR3|A0A0S3RZR3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0054900 LjG1.1_chr6 9842759 9850950 +
3 domain predictions
2 GO terms