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IPR001041

Source: InterPro

Description

IPR001041 is a 2Fe-2S ferredoxin-type iron-sulfur binding domain.

<p>Ferredoxins are small, acidic, electron transfer proteins that are ubiquitous in biological redox systems. They have either 4Fe-4S, 3Fe-4S, or 2Fe-2S cluster. Among them, ferredoxin with one 2Fe-2S cluster per molecule are present in plants, animals, and bacteria, and form a distinct Ferredoxin family [[cite:PUB00001617]]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes.</p> <p>Several structures of the 2Fe-2S ferredoxin-type domain have been determined [[cite:PUB00017893]]. The domain is classified as a β-grasp, which is characterised as having a β-sheet comprised of four β-strands and one α-helix flanking the sheet. The two Fe atoms are coordinated tetrahedrally by the two inorganic S atoms and four cysteinyl S atoms.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009055
Molecular function Electron transfer activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
Subterm of
GO:0051536
Molecular function Iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
Subterm of

Associated Lotus transcripts 44

Transcript Name Description Predicted domains Domain count
Lj0g3v0323599.1
– PREDICTED: ferredoxin-2-like [Cicer arietinum] gi|502152646|ref|XP_004509024.1|
Domains
11
Lj0g3v0336509.1
– Succinate dehydrogenase [Mangifera indica] gi|107770481|gb|ABF83897.1|
Domains
6
Lj0g3v0336519.1
– PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1|
Domains
17
Lj1g3v3597210.1
– PREDICTED: adrenodoxin-like protein, mitochondrial-like [Cicer arietinum] gi|502103229|ref|XP_004492232.1|
Domains
7
Lj1g3v3740570.1
– PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1|
Domains
24
Lj1g3v3751710.1
– PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1|
Domains
23
Lj1g3v3751710.2
– PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1|
Domains
23
Lj1g3v3906720.1
– PREDICTED: ferredoxin-like [Cicer arietinum] gi|502159000|ref|XP_004511360.1|
Domains
2
Lj1g3v4897990.1
– PREDICTED: ferredoxin-3, chloroplastic-like isoform X1 [Cicer arietinum] gi|502120992|ref|XP_004497151.1|
Domains
13
Lj3g3v1694660.1
– PREDICTED: xanthine dehydrogenase 1-like isoform X2 [Cicer arietinum] gi|502081768|ref|XP_004486962.1|
Domains
39
Lj3g3v2994500.2
– Ferredoxin-6 [Medicago truncatula] gi|357471641|ref|XP_003606105.1|
Domains
10
Lj4g3v0485140.1
– PREDICTED: succinate dehydrogenase [ubiquinone] gi|502089528|ref|XP_004488937.1|
Domains
18
Lj4g3v2215060.1
– PREDICTED: 2Fe-2S ferredoxin-like [Glycine max] gi|356547972|ref|XP_003542378.1|
Domains
13
Lj4g3v2690750.1
– 2Fe-2S ferredoxin-like superfamily protein, A,ATFD2 [Theobroma cacao] gi|508706205|gb|EOX98101.1|
Domains
13
Lj4g3v3096070.1
– PREDICTED: 2Fe-2S ferredoxin-like isoform X1 [Cicer arietinum] gi|502080842|ref|XP_004486700.1|
Domains
13
Lj5g3v0550180.1
– Electron carrier/ electron transporter/ iron ion binding protein [Medicago truncatula] gi|357436821|ref|XP_003588686.1|
Domains
7
Lj6g3v0409410.1
– PREDICTED: NADH dehydrogenase [ubiquinone] gi|356539814|ref|XP_003538388.1|
Domains
29
Lj6g3v2274750.2
– PREDICTED: ferredoxin-1, chloroplastic-like [Cicer arietinum] gi|502076836|ref|XP_004485473.1|
Domains
13
LotjaGi1g1v0059700.1
– Aldehyde oxidase; TAIR: AT3G43600.1 aldehyde oxidase 2; Swiss-Prot: sp|Q7G192|ALDO2_ARATH Indole-3-acetaldehyde oxidase; TrEMBL-Plants: tr|A0A1J7IPN3|A0A1J7IPN3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059700
Domains
35
LotjaGi1g1v0059900.1
– Aldehyde oxidase; TAIR: AT3G43600.1 aldehyde oxidase 2; Swiss-Prot: sp|Q7G192|ALDO2_ARATH Indole-3-acetaldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059900
Domains
36
LotjaGi1g1v0059900.2
– Aldehyde oxidase; TAIR: AT3G43600.1 aldehyde oxidase 2; Swiss-Prot: sp|Q7G192|ALDO2_ARATH Indole-3-acetaldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059900
Domains
36
LotjaGi1g1v0060000.1
– Aldehyde oxidase; TAIR: AT2G27150.1 abscisic aldehyde oxidase 3; Swiss-Prot: sp|Q7G9P4|ALDO3_ARATH Abscisic-aldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0060000
Domains
36
LotjaGi1g1v0060000.4
– Aldehyde oxidase; TAIR: AT2G27150.1 abscisic aldehyde oxidase 3; Swiss-Prot: sp|Q7G9P4|ALDO3_ARATH Abscisic-aldehyde oxidase; TrEMBL-Plants: tr|K7KB27|K7KB27_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0060000
Domains
36
LotjaGi1g1v0218600_LC.1
– Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0L9UIZ5|A0A0L9UIZ5_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0218600_LC
Domains
19
LotjaGi1g1v0616900.1
– Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900
Domains
25
LotjaGi1g1v0616900.2
– Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0616900
Domains
25
LotjaGi1g1v0617600.1
– Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600
Domains
24
LotjaGi1g1v0617600.2
– Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600
Domains
24
LotjaGi1g1v0617600.3
– Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; TAIR: AT5G40650.1 succinate dehydrogenase 2-2; Swiss-Prot: sp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial; TrEMBL-Plants: tr|A0A0S3SJV1|A0A0S3SJV1_PHAAN Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Found in the gene: LotjaGi1g1v0617600
Domains
24
LotjaGi1g1v0765600.1
– Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8M2|I3S8M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0765600
Domains
14
LotjaGi1g1v0765600.2
– Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8M2|I3S8M2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0765600
Domains
14
LotjaGi3g1v0019600.1
– Photosynthetic NDH subcomplex B 3; TAIR: AT3G16250.1 NDH-dependent cyclic electron flow 1; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SQH3|I3SQH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0019600
Domains
14
LotjaGi3g1v0288100.1
– Xanthine dehydrogenase; TAIR: AT4G34890.1 xanthine dehydrogenase 1; Swiss-Prot: sp|Q8GUQ8|XDH1_ARATH Xanthine dehydrogenase 1; TrEMBL-Plants: tr|A0A0B2RE38|A0A0B2RE38_GLYSO Xanthine dehydrogenase; Found in the gene: LotjaGi3g1v0288100
Domains
36
LotjaGi3g1v0288100.4
– Xanthine dehydrogenase; TAIR: AT4G34890.1 xanthine dehydrogenase 1; Swiss-Prot: sp|Q8GUQ8|XDH1_ARATH Xanthine dehydrogenase 1; TrEMBL-Plants: tr|A0A0R0G5H5|A0A0R0G5H5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0288100
Domains
36
LotjaGi3g1v0288100.5
– Xanthine dehydrogenase/oxidase; TAIR: AT4G34890.1 xanthine dehydrogenase 1; Swiss-Prot: sp|Q8GUQ8|XDH1_ARATH Xanthine dehydrogenase 1; TrEMBL-Plants: tr|A0A0B2RM17|A0A0B2RM17_GLYSO Xanthine dehydrogenase; Found in the gene: LotjaGi3g1v0288100
Domains
20
LotjaGi3g1v0477000.1
– Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8K1|I3S8K1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0477000
Domains
14
LotjaGi3g1v0477000.2
– Ferredoxin family protein; TAIR: AT2G27510.1 ferredoxin 3; Swiss-Prot: sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic; TrEMBL-Plants: tr|I3S8K1|I3S8K1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0477000
Domains
14
LotjaGi4g1v0188100.1
– Ferredoxin family protein; TAIR: AT1G32550.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|P08451|FER2_SYNP6 Ferredoxin-2; TrEMBL-Plants: tr|G7JGG5|G7JGG5_MEDTR 2Fe-2S ferredoxin superfamily protein; Found in the gene: LotjaGi4g1v0188100
Domains
12
LotjaGi4g1v0320900.1
– 2Fe-2S ferredoxin; TAIR: AT4G21090.1 MITOCHONDRIAL FERREDOXIN 2; Swiss-Prot: sp|Q8S904|MFDX2_ARATH Adrenodoxin-like protein 2, mitochondrial; TrEMBL-Plants: tr|A0A067KCK0|A0A067KCK0_JATCU Uncharacterized protein; Found in the gene: LotjaGi4g1v0320900
Domains
14
LotjaGi4g1v0387900.1
– Ferredoxin; TAIR: AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q43517|FER1_SOLLC Ferredoxin-1, chloroplastic; TrEMBL-Plants: tr|I3S4Y2|I3S4Y2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0387900
Domains
14
LotjaGi4g1v0451800.1
– 2Fe-2S ferredoxin; TAIR: AT4G21090.1 MITOCHONDRIAL FERREDOXIN 2; Swiss-Prot: sp|Q8S904|MFDX2_ARATH Adrenodoxin-like protein 2, mitochondrial; TrEMBL-Plants: tr|I3SN88|I3SN88_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0451800
Domains
14
LotjaGi5g1v0062700.1
– Photosynthetic NDH subcomplex B 3; TAIR: AT4G32590.4 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SH71|I3SH71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0062700
Domains
8
LotjaGi5g1v0062700.2
– Photosynthetic NDH subcomplex B 3; TAIR: AT4G32590.1 2Fe-2S ferredoxin-like superfamily protein; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SH71|I3SH71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0062700
Domains
8
LotjaGi6g1v0054900.1
– NADH-ubiquinone oxidoreductase subunit; TAIR: AT5G37510.1 NADH-ubiquinone dehydrogenase; Swiss-Prot: sp|Q43644|NDUS1_SOLTU NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial; TrEMBL-Plants: tr|A0A0S3RZR3|A0A0S3RZR3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0054900
Domains
31

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 2.27