Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0068300 |
| Transcript ID | LotjaGi5g1v0068300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic; TrEMBL-Plants: tr|A0A1J7GQW1|A0A1J7GQW1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0068300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11344516..11347954) extracted from Lotus japonicus Gifu genome v1.2.
CGGGCTTCAGACATGTGTATCACTAATATCAAACCCTAAATCAGTTTTAAAATTGAGTTAAACCCCAACCCATACCCAGT CAAAAGAGATTTATCCTCGTCAACTCGTGCCGGGTTTAAGCAGATTCCAATGAGTTTAGATTAAATTTCCATGTCTATAC TAAACCCAATTTCTATTTAGTTTTTGTTTTGACTTATGACTCTTTTTGCCATTTCAAATAACAACTACATATCTTATCTC AACCGTCACTCCTTTTTAAGATAATGTTTGCATACATGAAGAGGGCTGCACTGGTACAACTTGAGTGACACCACTTCGTA ACCTGCAACTTTTTGTGCTCCTTCTTCATCCACCACCAGCACCTTGGTCACCGATTCCCCTCCTTCCAACTCCACCGCAA ACCACCGTCACCAGCCCCTTCTTTTCCATCTCTTCGCACCACTCTTCTGATTTCTGCGTGTGTCTTTGTTTTCTGCACCC CATGTGTTTGTAAAATTGCCTCAATGGCTCTCTCCCATCTTCCCTGCCACCATCGTCCTCTTCCTCGCACCCTAACCACA TTCCACTCAACACCACTCTCTTTCTCTTCATTCTCACCCTTCAAAATCTCAGTGGTTTCAGCTTCAGCTTCAGCTTCTAC TTCCAGCACCCCCTCCACAAGTCCACACCACCCTCTACCTCCTGATTTCTCACTTTCCCAACTCCTGGACCTCCTCCGCC GCCAAAATGATGAGTTTTCCACCCTCCAAATCTTCCAATGGGCCTCCAACCACCCCAATTTCTCCCCCAACTCCTCCATT TACCACCAAACCCTCCGCCAGCTCGCTGAACTCGGCTCCCTCGACTCCATCCTCACCGTCCTCACACACATGAACTCCTC CGCCTGCCCCCTCAGCACTGACACCTTCCTCATCCTCATCGAGAGCTTTGCCAATTCTCGGTCACACGAGGATATTGACA GGGTGCTTCATCTCATGGAGCATGAGTTTGGGCTCAAACCCGACATCCGCTTCTACAATGTTGCCCTCAACGCCTTCGTT GATGGTAACAAGCTCAAGCTCGTGGAAACCCTGCATTCGAGGATGGTGGGTGGTGGCGTAGCTCCTGATGTTTCCACCTT TAACGTTTTGATCAAGGCTCTCTGTAAAGCGCATCAATTGAGGCCCGCAATTTTGATGCTTGAGGACATGGCGAGTTATG GGTTGAAGCCCGATGAGAAGACATTCACCACGCTGATGCAGGGTTTCATTGAGGAGGGTAATGTTGATGGCGCGTTGAGG GTTAAAGAGCAGATGGTCGGGTCTGGGTGCTTGCTAACCCACGTTTCTGTGAACATTTTGGTGAATGGTTTTTGCAGAGA GGGTCGAGTTGAGGAAGCTCTGAGCTTCATTCAGGAGGTTTCTGAAGAGGGGTTTTGCCCTAATCAGGTTACATTCAATG CTCTGGTGAATGGGTTGTGCAGAACTGGGCATATCAAGCAGGCTTTGGAAATGATGGATGTTATGCTTGAGAAGGGGTTT GATCCTGATATATACACTTACAATTCCTTGATCTCTGGGTTGTGTAGATTGGGTGAGGTTGATGAGGCTGTTGATATTCT GCAGCAGATGATTTTGAGAGATTGTTCCCCGAACACCGTGACTTACAACACTTTGATCAGCACCTTGTGCAAGGAGAATC AAATTGAAGCTGCTACTGAACTTGCCAATGTTCTCTCGAGTAAAGGGATATTCCCTGATGCTTGTACTTTCAATACTTTG ATACAAGGTCTCTGCTCGACCAAGAACCGAGAGGCTGCGATGGAGCTGTTCGAGGAGATGAGGAAGAAAGGGTGTCAACC TGATGAGTTTACGTACAGTATATTGATTGGCAGCCTCTGTTCTGAGAGGAGACTTGAGGAAGCATTGAAGCTGTTGAAAG ATATGGAGTTGAGTGGCTGTGCTAGGAATGTGGTGGTGTACAATACTTTGATTGATGGTTTGTGCAAAAACAAAAGGATT GTAGAAGCAGAGGAGATCTTTGATCAGATGGAATTTCTGGGGGTGTCAAAAAGTTCAGTAACCTACAACACTCTTATTGA TGGCCTTTGTAAGAACAAGAGAGTGGGGGAAGCTGCTCAACTTATGGATCAGATGATAATGGAAGGATTAAAACCTGATA AGTTCACTTATAATTCCATGCTTACATACTACTGCCAAAGTGGAGATATAGAGAAGGCAGCTGACATTGTGCAAACTATG ACTTCAAATGGTTGTGAACCCGACATTGTTACCTATGGAACCCTTATTGGGGGACTATGTAAGGCTGGTAGACTAGATGT TGCAAGTAAGCTTCTCAGATCTATTCAGATGAAAGGTATGGTTTTGACTCCTCATGCTTATAACCCTGTGCTTAAAGTAC TCTTTAGAAGAAAGAGAATAAAAGAAGCTATGAGGCTGTTCAGAGAAATGATGGAAAAGGCTGAATCTCCTGATGCTGTA ACTTACAAGATTGTTTTCCGTGGCCTCTGTAATGGTGGAGGGCCGATACAAGAGGCTGTTGATTTTACAGTTGAGATGCT GGAGAAAGGAATATTGCCAGATTTCCCATCATTTGGTTTCTTGGCCGAGGGTCTTTGTTCTTTAGCCATGGGGGACACCC TTATTGAACTCGTCAACATGGTGATGGAGAAAGCAAAATTCTCAGAAATGGAAACTTCTATGATCAGAGGCTTCCTTAAG ATCAATAAATTTAAAGATGCATTGGCCAATCTTAGTGTTATCTTGGATAGGCAAAAATCTAGAAGATATTGAGTAGTGAA AGGTTTTTAGTAACTTCACTCTGGTGATGCTTTAAAGAGTGTAATGAGAAAGCACCTCATTGTGTAAAGGTGCTGAAGAC TGTGGGGGAGTTCAAAACCAGGACTCAAAGCTTATTACAGGCTTGGGAGTCAATACATTTCAGCACTGATGGCTTTCTTC TGGCTGACCTCATTGATGAGTAACTTTTCTTCAGCCTTGTCATTTCCAGTTTCAAGGGGGAAAAAGTGAACATATAACTT ATTGCTGGCACTCATGAATGTTTCGTATTGCTGGCATTCTAAAACCCTATGTTAACATTGTTAAATCTGGATAAACCACA GATCAAAGGTATTGATGTTAGTTTTGATGAATATTTTGTATGATGTTTTTGTAATTTACATTCTCTTCGATAAGTATGTA CTATGTAGGTTGAATATTCTAATAGAAAGGCAATGTTATTATGTATAAAAAAGAAGCTGTGTTCGCATAAGAAACATTAT ACCAAACACAGCTGCAATAAGTCACATGGTTTGTTGCATTCTTGAGAGTCCAGACACAGCTGTAATCATAGTAAGCTGTG TTTCCAGAAAAAGAAAAGACTGTGTTTGGTCTCTCAAGTATGCAACAGCTTTTAGAATTTATATTCAGGTGACGGTGTG
CDS sequence (LotjaGi5g1v0068300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCTCCCATCTTCCCTGCCACCATCGTCCTCTTCCTCGCACCCTAACCACATTCCACTCAACACCACTCTCTTT CTCTTCATTCTCACCCTTCAAAATCTCAGTGGTTTCAGCTTCAGCTTCAGCTTCTACTTCCAGCACCCCCTCCACAAGTC CACACCACCCTCTACCTCCTGATTTCTCACTTTCCCAACTCCTGGACCTCCTCCGCCGCCAAAATGATGAGTTTTCCACC CTCCAAATCTTCCAATGGGCCTCCAACCACCCCAATTTCTCCCCCAACTCCTCCATTTACCACCAAACCCTCCGCCAGCT CGCTGAACTCGGCTCCCTCGACTCCATCCTCACCGTCCTCACACACATGAACTCCTCCGCCTGCCCCCTCAGCACTGACA CCTTCCTCATCCTCATCGAGAGCTTTGCCAATTCTCGGTCACACGAGGATATTGACAGGGTGCTTCATCTCATGGAGCAT GAGTTTGGGCTCAAACCCGACATCCGCTTCTACAATGTTGCCCTCAACGCCTTCGTTGATGGTAACAAGCTCAAGCTCGT GGAAACCCTGCATTCGAGGATGGTGGGTGGTGGCGTAGCTCCTGATGTTTCCACCTTTAACGTTTTGATCAAGGCTCTCT GTAAAGCGCATCAATTGAGGCCCGCAATTTTGATGCTTGAGGACATGGCGAGTTATGGGTTGAAGCCCGATGAGAAGACA TTCACCACGCTGATGCAGGGTTTCATTGAGGAGGGTAATGTTGATGGCGCGTTGAGGGTTAAAGAGCAGATGGTCGGGTC TGGGTGCTTGCTAACCCACGTTTCTGTGAACATTTTGGTGAATGGTTTTTGCAGAGAGGGTCGAGTTGAGGAAGCTCTGA GCTTCATTCAGGAGGTTTCTGAAGAGGGGTTTTGCCCTAATCAGGTTACATTCAATGCTCTGGTGAATGGGTTGTGCAGA ACTGGGCATATCAAGCAGGCTTTGGAAATGATGGATGTTATGCTTGAGAAGGGGTTTGATCCTGATATATACACTTACAA TTCCTTGATCTCTGGGTTGTGTAGATTGGGTGAGGTTGATGAGGCTGTTGATATTCTGCAGCAGATGATTTTGAGAGATT GTTCCCCGAACACCGTGACTTACAACACTTTGATCAGCACCTTGTGCAAGGAGAATCAAATTGAAGCTGCTACTGAACTT GCCAATGTTCTCTCGAGTAAAGGGATATTCCCTGATGCTTGTACTTTCAATACTTTGATACAAGGTCTCTGCTCGACCAA GAACCGAGAGGCTGCGATGGAGCTGTTCGAGGAGATGAGGAAGAAAGGGTGTCAACCTGATGAGTTTACGTACAGTATAT TGATTGGCAGCCTCTGTTCTGAGAGGAGACTTGAGGAAGCATTGAAGCTGTTGAAAGATATGGAGTTGAGTGGCTGTGCT AGGAATGTGGTGGTGTACAATACTTTGATTGATGGTTTGTGCAAAAACAAAAGGATTGTAGAAGCAGAGGAGATCTTTGA TCAGATGGAATTTCTGGGGGTGTCAAAAAGTTCAGTAACCTACAACACTCTTATTGATGGCCTTTGTAAGAACAAGAGAG TGGGGGAAGCTGCTCAACTTATGGATCAGATGATAATGGAAGGATTAAAACCTGATAAGTTCACTTATAATTCCATGCTT ACATACTACTGCCAAAGTGGAGATATAGAGAAGGCAGCTGACATTGTGCAAACTATGACTTCAAATGGTTGTGAACCCGA CATTGTTACCTATGGAACCCTTATTGGGGGACTATGTAAGGCTGGTAGACTAGATGTTGCAAGTAAGCTTCTCAGATCTA TTCAGATGAAAGGTATGGTTTTGACTCCTCATGCTTATAACCCTGTGCTTAAAGTACTCTTTAGAAGAAAGAGAATAAAA GAAGCTATGAGGCTGTTCAGAGAAATGATGGAAAAGGCTGAATCTCCTGATGCTGTAACTTACAAGATTGTTTTCCGTGG CCTCTGTAATGGTGGAGGGCCGATACAAGAGGCTGTTGATTTTACAGTTGAGATGCTGGAGAAAGGAATATTGCCAGATT TCCCATCATTTGGTTTCTTGGCCGAGGGTCTTTGTTCTTTAGCCATGGGGGACACCCTTATTGAACTCGTCAACATGGTG ATGGAGAAAGCAAAATTCTCAGAAATGGAAACTTCTATGATCAGAGGCTTCCTTAAGATCAATAAATTTAAAGATGCATT GGCCAATCTTAGTGTTATCTTGGATAGGCAAAAATCTAGAAGATATTGA
Protein sequence (LotjaGi5g1v0068300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSHLPCHHRPLPRTLTTFHSTPLSFSSFSPFKISVVSASASASTSSTPSTSPHHPLPPDFSLSQLLDLLRRQNDEFST LQIFQWASNHPNFSPNSSIYHQTLRQLAELGSLDSILTVLTHMNSSACPLSTDTFLILIESFANSRSHEDIDRVLHLMEH EFGLKPDIRFYNVALNAFVDGNKLKLVETLHSRMVGGGVAPDVSTFNVLIKALCKAHQLRPAILMLEDMASYGLKPDEKT FTTLMQGFIEEGNVDGALRVKEQMVGSGCLLTHVSVNILVNGFCREGRVEEALSFIQEVSEEGFCPNQVTFNALVNGLCR TGHIKQALEMMDVMLEKGFDPDIYTYNSLISGLCRLGEVDEAVDILQQMILRDCSPNTVTYNTLISTLCKENQIEAATEL ANVLSSKGIFPDACTFNTLIQGLCSTKNREAAMELFEEMRKKGCQPDEFTYSILIGSLCSERRLEEALKLLKDMELSGCA RNVVVYNTLIDGLCKNKRIVEAEEIFDQMEFLGVSKSSVTYNTLIDGLCKNKRVGEAAQLMDQMIMEGLKPDKFTYNSML TYYCQSGDIEKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRLDVASKLLRSIQMKGMVLTPHAYNPVLKVLFRRKRIK EAMRLFREMMEKAESPDAVTYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPDFPSFGFLAEGLCSLAMGDTLIELVNMV MEKAKFSEMETSMIRGFLKINKFKDALANLSVILDRQKSRRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 44 | 44 | - | – | |
| Gene3D | 50 | 180 | 131 | 4.4E-15 | ||
| PANTHER | 64 | 270 | 207 | 1.9E-251 | – | |
| ProSiteProfiles | 96 | 130 | 35 | 6.5 | ||
| Pfam | 123 | 180 | 58 | 0.003 | ||
| ProSiteProfiles | 131 | 166 | 36 | 6.347 | ||
| TIGRFAM | 134 | 168 | 35 | 0.0024 | ||
| ProSiteProfiles | 167 | 201 | 35 | 8.561 | ||
| PANTHER | 186 | 320 | 135 | 1.9E-251 | – | |
| Gene3D | 188 | 263 | 76 | 5.5E-19 | ||
| Pfam | 201 | 248 | 48 | 1.4E-12 | ||
| ProSiteProfiles | 202 | 236 | 35 | 11.586 | ||
| TIGRFAM | 205 | 238 | 34 | 3.4E-5 | ||
| ProSiteProfiles | 237 | 271 | 35 | 10.49 | ||
| TIGRFAM | 240 | 271 | 32 | 1.1E-5 | ||
| PANTHER | 251 | 412 | 162 | 1.9E-251 | – | |
| Gene3D | 264 | 334 | 71 | 5.9E-21 | ||
| Pfam | 268 | 295 | 28 | 9.2E-8 | ||
| ProSiteProfiles | 272 | 306 | 35 | 11.685 | ||
| TIGRFAM | 274 | 307 | 34 | 2.1E-8 | ||
| PANTHER | 302 | 474 | 173 | 1.9E-251 | – | |
| Pfam | 306 | 355 | 50 | 2.7E-17 | ||
| ProSiteProfiles | 307 | 341 | 35 | 13.154 | ||
| TIGRFAM | 309 | 343 | 35 | 1.6E-8 | ||
| Gene3D | 335 | 403 | 69 | 1.3E-22 | ||
| ProSiteProfiles | 342 | 376 | 35 | 13.877 | ||
| TIGRFAM | 344 | 378 | 35 | 7.7E-12 | ||
| Pfam | 373 | 400 | 28 | 1.5E-9 | ||
| ProSiteProfiles | 377 | 411 | 35 | 11.148 | ||
| TIGRFAM | 379 | 413 | 35 | 6.4E-6 | ||
| Gene3D | 404 | 476 | 73 | 1.8E-25 | ||
| PANTHER | 406 | 581 | 176 | 1.9E-251 | – | |
| Pfam | 411 | 460 | 50 | 1.6E-19 | ||
| SUPERFAMILY | 411 | 583 | 173 | 5.75E-6 | – | |
| ProSiteProfiles | 412 | 446 | 35 | 13.603 | ||
| TIGRFAM | 414 | 448 | 35 | 1.3E-10 | ||
| ProSiteProfiles | 447 | 481 | 35 | 11.718 | ||
| TIGRFAM | 449 | 482 | 34 | 3.4E-8 | ||
| Gene3D | 477 | 544 | 68 | 1.5E-22 | ||
| Pfam | 478 | 510 | 33 | 6.6E-13 | ||
| ProSiteProfiles | 482 | 516 | 35 | 12.375 | ||
| TIGRFAM | 484 | 515 | 32 | 2.2E-9 | ||
| Pfam | 513 | 544 | 32 | 1.0E-11 | ||
| ProSiteProfiles | 517 | 551 | 35 | 13.45 | ||
| TIGRFAM | 519 | 552 | 34 | 5.2E-11 | ||
| Gene3D | 545 | 617 | 73 | 2.5E-23 | ||
| PANTHER | 548 | 746 | 199 | 1.9E-251 | – | |
| ProSiteProfiles | 552 | 586 | 35 | 13.088 | ||
| TIGRFAM | 554 | 588 | 35 | 1.0E-9 | ||
| Pfam | 554 | 600 | 47 | 3.4E-15 | ||
| ProSiteProfiles | 587 | 621 | 35 | 11.17 | ||
| TIGRFAM | 589 | 622 | 34 | 4.7E-6 | ||
| Gene3D | 618 | 759 | 142 | 2.3E-16 | ||
| ProSiteProfiles | 622 | 656 | 35 | 10.687 | ||
| Pfam | 624 | 670 | 47 | 1.2E-12 | ||
| TIGRFAM | 625 | 657 | 33 | 1.9E-6 | ||
| ProSiteProfiles | 657 | 692 | 36 | 10.271 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0068300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…