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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0070500 |
| Transcript ID | LotjaGi5g1v0070500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SLOW GREEN 1, chloroplastic; TAIR: AT2G37400.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LS48|SG1_ARATH protein SLOW GREEN 1, chloroplastic; TrEMBL-Plants: tr|A0A1J7IS44|A0A1J7IS44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0070500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11634393..11637330) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTTTTGGCATATTAGTTGCTCGAGTAATCCGTGAGGATGAGACCAGGGTTTTAGCAATGTCTCCGTTTTCTTCAAC CTTAGCCATGGAGTCTCTCCCTAAATTGCACCACCCTCACCTCTCCCTCAACCGCCGCCACTTTCCATCAGCACCACCCT TCTCCTCCCTCTCCTTCCGCTCCCAACCACCACCTTCATTCTCTTCTTCCTTCAAATCATCACGTATCAGAGCCTCATCC TCACCCTCACCCAACAACCCTTCTTCTCACAACCGCCAAAACCCTTTCCTCCGAGCCCTCCTTTCACCTTTCCTCGAACC CACCTACATCGCCATAGTCGCAGCCGCATTCTTCCTCTTGCGCCTCCAGCTCAAGCCCGCCAAGGCCACCGCCCCACTCG TACCTCAGCCGCCGCCGGCAGAGTCCGCCACCCTCGAGGAACCCCTACAGAGCGAAGAAGATGAAGAGGAGACAGCCACC ATAGAGGAGCGGCTCAGCAACAACCCCGCCGACACCGAGGCGCTACGGTCCCTCGTGGAGGTGAAAGTCAGGGCTCGGAA AATCGACGAGGCGGTTCAGGCCGTGGACCGTTTGATCGAGCTGGAGCCAGAGGAGGTGGAGCTGCTGGTGCTGAAGGCGC ATTTGTACAGCCACAACGGCGAGCACGAACTGGCGAGGAACGGGTTCGAGGAAGTGCTGAAGAGAGACCCTTTTGACGCT GAGGCTTATCACGGGCTTCTGAAGGCGACTTCGGAGCTGAACGAGCCAATTGGGGATTTGTTGAAGAGGATTGAAGAGGC AATGAAGCATTGCGAGGCGGAGAAGGATAAGGCTTTTGAAGCGAGGGAGTTTAAGCTCTTGATTGCGCAGATTAAGGTGA TTGAGGATGACTATTCTGGTGCTCTGAAGGTGTATCAGGAGCTTGTGAAGGAGGAACCGAAGGATTTTAGACCTTACTTG TGTCAGGGTGTTGTGTATACTCTGCTTAAGAAGAAAGATGAAGCTGATAAACAGTTTGCCATGTACCGAAAACTTCTCCC GAAGGATCATCCTTATAAAGAGTACTTTGAGGACAACACTCAGGTTTTCTCGCAGAAGCTACGCGGAATAGATGCTAAGA GCTGAGAGTGATGAACTTCTTAACTTGATGGCAGTTATGTGAGGTTTCTATAGAGAGGTCAAAAATTCTTTTGCTGCTTC TTGCTTTGATTTTGTTGAATAATTTGGTTATTAGTCATGGTGAATGGTGCTGTTTGTAGGTGATTTAGTTTTGCATTCAA TGGTAGTTCCTAATAACCTTAGCTCGGATTTCTGATAGATATTGATGTTGAGGTTTTCAGAACAGGGCTTTGTTTAAGAT AGGTTAAATAGAACTGGTGCATTAGTCAATTTCCTAGGCACTATGTAATTATTTAAATTGTAACTTAAAAGTTATATTTC CTTCTATGTGATTTTTTCTTATTCCTCTTCCTATCTTTTGAGAGGTACACGAGCATGTGCACATTACATCAACCACATTG GTATCATTATACTTGCTAAGGTCTTCACATTGACTAGAGATATAGCCTAATTGGTCCTTATAAAGGGTTAATCAATCCTC ACACTTAAGCTAGCTTTTGGGATAGAGGTATAGTCTAGCCCAAATTCTAAGATGGTACCTGAGCCTATCCTAGATATGCT TTTTGGGTCACCCATAAATCGGCCACTCCTATATGTCCAGTTCTACAAACTTCACTCCTTGAACTAGCTTTTGGGGTAGA GTTAGGTCTAACTTGAATGATAAGAATGCTATGTACTACAACACTCTTCCTCAGCAAGAATTTAGATTTTGAAGATGGTG ATCTCTATGCAAATTAAATTCATTATTTTATGAATATTTTGTACATTGAGGTTGGTCTTTGTTGCGGAGAATGACATACA GGAAACTGGAACCCCATGGAACACTAACAATCTACATTGAAAATAAAATTCGTTGCGTGATAAGTGATAACTTCTTGGTG GCAGTGGAGAAGTTTATTGGATTTCCATTTGCTTTTGGACGCCAATATGGTTGAGTCCAATTATGCTCATTCTTGTTTGT TACTCTTATGATGGCTTTTCTGTCATGTTAACTCATCTATGCTATGGATTGACTGGATTGTTACACCTCTAGATTTCCCC ATGCTGCAAATTATGTTTGTCCTTATAGATATGTTCATGTTGTATAAATATGAGCGCACTAAGAGATTCCTTTTCATTTT TCTCATTTGGTGCTTTAAATTGCAGCATACGATTGTCAGTTGAAGTGTTCTGTTTTAACATTTCCTCTTATGTAACTTCA CAGGGGTAGTCTTTGGTGTCCCAGACTATTCTGATGATGGCATGTGCCGTGATATTAGTTTTGGCAAAGTGTTGAACTAT GGTATGATTGTCTTATAATTGATTAGAGGTTGCCACCACTTTTCCAAGTTAATTCACAATTCTGGATCAGCTTTGGCAAA GTGTTGAACTATGCTATGTGTGTATCAGCTTAATTTTTTTTCTGAGTCAATTTTTGTATCTAGAAGCTACTCACAGAATG ACTAAAAGTTTGGAGGGTCTATACTAGGAGAAAGAAGGGTTAGCTGTCAGTGAGAGGAATTGCAGAATGGAAGTGTTAGT TACCATGAGGGGGAACTCGAGTTCATATAGGTGCTGGTTAGTGGAGAGAGAGGTATTGTTGGATAATAATTTTCTGTTTT GTGAATGGAGAGAAATAGCTGTTTGTATGAGCTTGGCTCTGGGAAGTAGTAGGTCTCCCTCTTATTTCAATAATACAAAT ACCGTTTCCCTTTCACAATCTCTGCTTTTCTGCCTTAGTTTCTATTGTTGGACTCAGTTTTGTATCAATGAACAGCAAGT TCTGTTTTAAGTCATTTAGTTATTTTCATCTTCATTTTGGCTTTGTTAATTCTATAGG
CDS sequence (LotjaGi5g1v0070500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCGTTTTCTTCAACCTTAGCCATGGAGTCTCTCCCTAAATTGCACCACCCTCACCTCTCCCTCAACCGCCGCCA CTTTCCATCAGCACCACCCTTCTCCTCCCTCTCCTTCCGCTCCCAACCACCACCTTCATTCTCTTCTTCCTTCAAATCAT CACGTATCAGAGCCTCATCCTCACCCTCACCCAACAACCCTTCTTCTCACAACCGCCAAAACCCTTTCCTCCGAGCCCTC CTTTCACCTTTCCTCGAACCCACCTACATCGCCATAGTCGCAGCCGCATTCTTCCTCTTGCGCCTCCAGCTCAAGCCCGC CAAGGCCACCGCCCCACTCGTACCTCAGCCGCCGCCGGCAGAGTCCGCCACCCTCGAGGAACCCCTACAGAGCGAAGAAG ATGAAGAGGAGACAGCCACCATAGAGGAGCGGCTCAGCAACAACCCCGCCGACACCGAGGCGCTACGGTCCCTCGTGGAG GTGAAAGTCAGGGCTCGGAAAATCGACGAGGCGGTTCAGGCCGTGGACCGTTTGATCGAGCTGGAGCCAGAGGAGGTGGA GCTGCTGGTGCTGAAGGCGCATTTGTACAGCCACAACGGCGAGCACGAACTGGCGAGGAACGGGTTCGAGGAAGTGCTGA AGAGAGACCCTTTTGACGCTGAGGCTTATCACGGGCTTCTGAAGGCGACTTCGGAGCTGAACGAGCCAATTGGGGATTTG TTGAAGAGGATTGAAGAGGCAATGAAGCATTGCGAGGCGGAGAAGGATAAGGCTTTTGAAGCGAGGGAGTTTAAGCTCTT GATTGCGCAGATTAAGGTGATTGAGGATGACTATTCTGGTGCTCTGAAGGTGTATCAGGAGCTTGTGAAGGAGGAACCGA AGGATTTTAGACCTTACTTGTGTCAGGGTGTTGTGTATACTCTGCTTAAGAAGAAAGATGAAGCTGATAAACAGTTTGCC ATGTACCGAAAACTTCTCCCGAAGGATCATCCTTATAAAGAGTACTTTGAGGACAACACTCAGGTTTTCTCGCAGAAGCT ACGCGGAATAGATGCTAAGAGCTGA
Protein sequence (LotjaGi5g1v0070500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPFSSTLAMESLPKLHHPHLSLNRRHFPSAPPFSSLSFRSQPPPSFSSSFKSSRIRASSSPSPNNPSSHNRQNPFLRAL LSPFLEPTYIAIVAAAFFLLRLQLKPAKATAPLVPQPPPAESATLEEPLQSEEDEEETATIEERLSNNPADTEALRSLVE VKVRARKIDEAVQAVDRLIELEPEEVELLVLKAHLYSHNGEHELARNGFEEVLKRDPFDAEAYHGLLKATSELNEPIGDL LKRIEEAMKHCEAEKDKAFEAREFKLLIAQIKVIEDDYSGALKVYQELVKEEPKDFRPYLCQGVVYTLLKKKDEADKQFA MYRKLLPKDHPYKEYFEDNTQVFSQKLRGIDAKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 75 | 75 | - | – | |
| PANTHER | 31 | 347 | 317 | 4.7E-113 | – | |
| PANTHER | 31 | 347 | 317 | 4.7E-113 | – | |
| MobiDBLite | 34 | 72 | 39 | - | – | |
| Phobius | 76 | 100 | 25 | - | – | |
| Phobius | 101 | 354 | 254 | - | – | |
| Gene3D | 105 | 341 | 237 | 2.5E-22 | ||
| MobiDBLite | 111 | 149 | 39 | - | – | |
| SUPERFAMILY | 144 | 330 | 187 | 5.75E-19 | ||
| ProSiteProfiles | 152 | 185 | 34 | 8.821 | ||
| SMART | 152 | 185 | 34 | 110.0 | ||
| ProSiteProfiles | 152 | 329 | 178 | 19.231 | ||
| Pfam | 162 | 219 | 58 | 8.0E-5 | – | |
| ProSiteProfiles | 186 | 219 | 34 | 8.26 | ||
| SMART | 186 | 219 | 34 | 0.8 | ||
| Coils | 241 | 261 | 21 | - | – | |
| ProSiteProfiles | 262 | 295 | 34 | 7.169 | ||
| SMART | 262 | 295 | 34 | 140.0 | ||
| ProSiteProfiles | 296 | 329 | 34 | 5.93 | ||
| SMART | 296 | 329 | 34 | 150.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0070500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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