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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0071300 |
| Transcript ID | LotjaGi5g1v0071300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lung seven transmembrane receptor, putative; TAIR: AT5G18520.1 Lung seven transmembrane receptor family protein; Swiss-Prot: sp|Q8BUV8|GP107_MOUSE Protein GPR107; TrEMBL-Plants: tr|A0A103XH29|A0A103XH29_CYNCS Transmembrane receptor, eukaryota; Found in the gene: LotjaGi5g1v0071300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11810242..11811564) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCAAAACGGCATCCGCCGCCGCCGTCTTCCTCCTCCTCCTCCTCTTCCTCGCCACCCCCTCCACGGCGGAGATCAA GTCCCTCACCATAACCTCCGACACCCGCCCCATGATCCTCTTCGAGCAATTCGGATTCACACACACCGGCCACGTCTCCA TCGCCGTCTCGGAGGTCTCGGTGGCGGCCTCCGCCTCCGCCTCCCAACCCGACCCCTCCCGCCTAGGGTTCTTCCTCCTC AGCGAGGAGTCGCTCATCCAAGTCGCGATTGAGATCCAGCAAAACCCTTCCTTCTGCGTCCTCGATTCACACTACATCAC CCACCTCTTCACCTTCCGCGACCTCTCGCCGCCGCCATCGGCGTCGTTCAACCGCTCCTACCCCGTCACCTTCCCCAACG AGTTCAGCCTCTTCTTCGCCAATTGCGCTCCGGACACCTCCGTCTCCATGGCCGTCCGCACCGAGCTTTACAACCTCGAC AATGACGGCTCCCGCGACTACCTCTCCGCCGGGGTAACCCGCCTGCCTACACTCTTCTCCGTGTTCTCCCTCGCCTACCT CGCCTTCTTCGCTATCTGGGTCTACATCTGCTACACCAACCGCCGCTCCTTCCACCGCATCCACCTCCTCATGGCCGCGC TCCTCCTCATGAAGGCACTCAATCTCATCTGCGCCGCGGAGGACAAGCACTATGTGAAAGTCACCGGCACCCCTCACGGC TGGGACGTCCTCTTCTACATCTTCCAGCTCATCCGCGTCGTGCTTCTCTTCACCGTCATTGTCCTCATCGGCACCGGCTG GTCCTTCCTCAAGCCATTCCTTCAGGAGAAGGAGAAGAAGGTCCTCATGGTTGTCATCCCCCTGCAGGTTCTCGCCAATC TCGCCTCCGTCGTCATTGGCGAGACTGGACCCTTCATCAAGGATTGGGTCACCTGGAACCAGGTTTTCCTTCTGGTTGAT GTCATTTGTTGCTGTGCTATCATCTTCCCCATTGTTTGGTCCATTAGGTCCCTCAGGGAAACTTCCAAGACTGATGGCAA AGCTGCTAGGAACTTGGCCAAGTTAACCCTCTTCAGGCAATTCTATATTGTTGTCATTGGCTACTTGTATTTCACTCGCA TTATTGTCTTTGCCCTCAAAACTATCACGGCTTATAAGTACCGGTGGGTCAGTAATTTCGCCGAGGAGGCTGCTAGTCTT GCCTTTTATGTTGTCATGTTCTACATGTTTCAACCGGTGGAGAAGAATGAGTATTTCGTGCTCGACGAGGAGGAAGAAGA GGCGGCAGAGCTCGCGCTCAGGGAAGAAGAATTTGAGCTTTGA
CDS sequence (LotjaGi5g1v0071300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAAACGGCATCCGCCGCCGCCGTCTTCCTCCTCCTCCTCCTCTTCCTCGCCACCCCCTCCACGGCGGAGATCAA GTCCCTCACCATAACCTCCGACACCCGCCCCATGATCCTCTTCGAGCAATTCGGATTCACACACACCGGCCACGTCTCCA TCGCCGTCTCGGAGGTCTCGGTGGCGGCCTCCGCCTCCGCCTCCCAACCCGACCCCTCCCGCCTAGGGTTCTTCCTCCTC AGCGAGGAGTCGCTCATCCAAGTCGCGATTGAGATCCAGCAAAACCCTTCCTTCTGCGTCCTCGATTCACACTACATCAC CCACCTCTTCACCTTCCGCGACCTCTCGCCGCCGCCATCGGCGTCGTTCAACCGCTCCTACCCCGTCACCTTCCCCAACG AGTTCACCCGCGACTACCTCTCCGCCGGGGTAACCCGCCTGCCTACACTCTTCTCCGTGTTCTCCCTCGCCTACCTCGCC TTCTTCGCTATCTGGGTCTACATCTGCTACACCAACCGCCGCTCCTTCCACCGCATCCACCTCCTCATGGCCGCGCTCCT CCTCATGAAGGCACTCAATCTCATCTGCGCCGCGGAGGACAAGCACTATGTGAAAGTCACCGGCACCCCTCACGGCTGGG ACGTCCTCTTCTACATCTTCCAGCTCATCCGCGTCGTGCTTCTCTTCACCGTCATTGTCCTCATCGGCACCGGCTGGTCC TTCCTCAAGCCATTCCTTCAGGAGAAGGAGAAGAAGGTCCTCATGGTTGTCATCCCCCTGCAGGTTCTCGCCAATCTCGC CTCCGTCGTCATTGGCGAGACTGGACCCTTCATCAAGGATTGGGTCACCTGGAACCAGGTTTTCCTTCTGGTTGATGTCA TTTGTTGCTGTGCTATCATCTTCCCCATTGTTTGGTCCATTAGGTCCCTCAGGGAAACTTCCAAGACTGATGGCAAAGCT GCTAGGAACTTGGCCAAGTTAACCCTCTTCAGGCAATTCTATATTGTTGTCATTGGCTACTTGTATTTCACTCGCATTAT TGTCTTTGCCCTCAAAACTATCACGGCTTATAAGTACCGGTGGGTCAGTAATTTCGCCGAGGAGGCTGCTAGTCTTGCCT TTTATGTTGTCATGTTCTACATGTTTCAACCGGTGGAGAAGAATGAGTATTTCGTGCTCGACGAGGAGGAAGAAGAGGCG GCAGAGCTCGCGCTCAGGGAAGAAGAATTTGAGCTTTGA
Protein sequence (LotjaGi5g1v0071300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKTASAAAVFLLLLLFLATPSTAEIKSLTITSDTRPMILFEQFGFTHTGHVSIAVSEVSVAASASASQPDPSRLGFFLL SEESLIQVAIEIQQNPSFCVLDSHYITHLFTFRDLSPPPSASFNRSYPVTFPNEFTRDYLSAGVTRLPTLFSVFSLAYLA FFAIWVYICYTNRRSFHRIHLLMAALLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQLIRVVLLFTVIVLIGTGWS FLKPFLQEKEKKVLMVVIPLQVLANLASVVIGETGPFIKDWVTWNQVFLLVDVICCCAIIFPIVWSIRSLRETSKTDGKA ARNLAKLTLFRQFYIVVIGYLYFTRIIVFALKTITAYKYRWVSNFAEEAASLAFYVVMFYMFQPVEKNEYFVLDEEEEEA AELALREEEFEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| PANTHER | 9 | 135 | 127 | 6.7E-233 | ||
| PANTHER | 9 | 135 | 127 | 6.7E-233 | – | |
| Phobius | 19 | 24 | 6 | - | – | |
| Phobius | 25 | 149 | 125 | - | – | |
| Pfam | 124 | 388 | 265 | 5.5E-49 | ||
| PANTHER | 136 | 412 | 277 | 6.7E-233 | ||
| PANTHER | 136 | 412 | 277 | 6.7E-233 | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 150 | 170 | 21 | - | – | |
| Phobius | 171 | 178 | 8 | - | – | |
| TMHMM | 176 | 198 | 23 | - | – | |
| Phobius | 179 | 195 | 17 | - | – | |
| Phobius | 196 | 214 | 19 | - | – | |
| Phobius | 215 | 241 | 27 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 242 | 252 | 11 | - | – | |
| Phobius | 253 | 272 | 20 | - | – | |
| TMHMM | 253 | 275 | 23 | - | – | |
| Phobius | 273 | 283 | 11 | - | – | |
| Phobius | 284 | 307 | 24 | - | – | |
| TMHMM | 285 | 307 | 23 | - | – | |
| Phobius | 308 | 327 | 20 | - | – | |
| TMHMM | 327 | 349 | 23 | - | – | |
| Phobius | 328 | 349 | 22 | - | – | |
| Phobius | 350 | 360 | 11 | - | – | |
| Phobius | 361 | 382 | 22 | - | – | |
| Phobius | 383 | 412 | 30 | - | – | |
| Coils | 393 | 412 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0071300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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