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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0071900 |
| Transcript ID | LotjaGi5g1v0071900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G37310.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310; TrEMBL-Plants: tr|A0A1J7FR06|A0A1J7FR06_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0071900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11861684..11864810) extracted from Lotus japonicus Gifu genome v1.2.
AAATTCCTCAAAGTAGCAAAACAAATGAATGAGGATCCACAACGCATTGTCTCATAGCCTTCGATTTCAAACACAACAGC AACCCGCCAACACCACCCTCCGCCAGCGCCTCCTCAAAACCCACGGCGGACTCGACTTCACCGCCTATGGCTCCGCCATT CAACACTGCGCTAACCACCGCCTCCTCCGCCAGGGAAAACAGCTCCACGCTCGCCTCTTCATATTCTCCGTCACCCCCGA CAACTTCCTCTCCTCAAAGCTCATCACCTTCTACGCCAAATCCAACCTCCCACGCGAAGCGCGCCGCGTGTTCGACGCAA TTCCCCGGAAGAACACGTTCTCCTTCAACGCCATGCTCATTGCTTACTCCTTCAACGGCCTTTACCGCCACTTGCTGGAC CTGTTTGCCTCCTCCGTCGACGCTGGAATCTCTCCTGATAGCTTCACCGTAACCAGCGTCTTGAAGGCGATCGCTTCGCC GTCTTTTTCGTACTATAAACCGGTGAAAGAGGCTCACTGTTTTGTTCTTCGGCGCGGGTTGGAGACCGATATTTTCGTTG AGAATGCGTTGGTGACTTGTTATTGTAGGTGTGGTGAAATTGGGCTTGCGAGGAAGGTGTTTGATGGAATGCCTGAGAGA GATACCGTGTCGTGGAACTCAATGATTGGTGGGTATTCTCAGTGTGGGTTCTATGAAGAGTGTAAGAGGTTGTACATGGA GATGTTGAGTGTAGGGAGTGTTGTGCCGGATGGGGTTACGATTGTGAGCGTGATGCAGGCGTGCGGGCAGTCTAAGGATC TTGTGTTGGGAATGGAGGTTCACGGTTTTGTGAATGAGAGTGGGATTGAGGTGGACTTGCCGCTTTGTAATGCTGTGATT GCGATGTATGCCAAATGTGGGAGTTTGGATTATGCTCGAGAGCTGTTTGAGGAAATGAGTGAGAAGGATGATGTTAGTTA TGGGTCAATTATTTCAGGGTACATGGCTTACGGGTTTGTGGTCAAAGCCAGGGATGTTTTCAGGGGAATGGAAAACCCTG GATTGGATACATGGAATGCTTTGATTTCTGGAATGGTTCAGAATAACTGGTTTGAAGGGGCCATTGATTTAGTTCGGGAA ATGCAGGGGTCTGGTTTGAAACCAAATGCTGTCACACTTGCTAGCACTATTCCTTTGTTTTCGTATTTCTCAAACCTGCG AGGGGGGAAAGAGGTGCATGCTTATGCCATCAGAAGGTGTTATGATCAAAATATATATGTGGCAACTGCCATTATTGATA CCTATGCGAAGTTAGGGTTTATTCACGGGGCAAGGCAGGTTTTTGATCAAGCACGAAGTAGGAGCTTGGTAATTTGGACA GCAATTATTACAGCTTATGCAGCTCATGGAGATGCTAGTTTGGCACTTGGTCTCTATGCTCAGATGCTAGATAGTGGAAT TCAACCTGATCAGGTGACATTAACTGCTGTATTGACAGCTTGTGCTCATTCGGGACTGGTAGATGAAGCTTGGAAGATCT TCAATACGATGCATTCAAAATATGGCATTCAACCCTTGGTGGAACAGTATGCCTGCATGGTGGGTGTTCTTAGTCGAGCT GGAAAGCTCTCAGAAGCAGCAAAATTCATTTCCGAAATGCCAATTGAGCCAAGTGCTAAAGCTTGGGGTGCTTTGCTAAA TGGGGCTTCTGTCTATGGTGATGTTGAAACAGGCAAGTTTGCTTGTGATCATTTGTTTGAGATTGAGCCTGAAAGTTCTG GCAATTACATAATTATGGCAAATCTGTATTCATGTGCTGGGAGATGGGAAGAAGCTAGTAGGGTTAGGAAAAGAATGGAA GAAATCGGGGTACATAAGATCCGTGGAAGTAGCTGGATTGAAATGAGTGGAAGGTTAATAGCCTTCATTGCCAAAGATGT GTCAAATGAAAGATCTGATGAGATTTATACATATCTGGAAGGATTGTTTTGTATGATGAGGGAAGAGGGATATATCTTGC AGGAAGAGTTGGATTGTGAGATGTGGTAATAATTCGCATGCCAGAGCAACAAAAGACCCCTATACTTCTGAGGTTCAGAG TCTAAGTAGCACGTCTATCACATTACTCGGCAAAAATTTCAAGCTTTACCGGATGCTACTATGTTAGGAATGAGTTCTCC CCTCTTTAGTGTCAATGGAAATTTTATGCCTGCTGATTACTGAATTTTCACCTAAGATGATAGTCAGGGCCAAGAAAGGC CAAGCTCCGTCGGAGTTCATAATCATTTTTCTTTGGGCGAAATACGATTGAGTTTATCGGTGCTTTTTTGGTTCAATCAA GTTTGCATTGTTGGTAAAACAGCTCTGATTTCCATTCAGCGGTTTGATCTGGGTTCCATTGTGATTCAACTATGCACTTC AGCGGAAAAAGTTGCACCATAGCTAGCACTGAACTTTGGCCTATAGTAAAGTGATTACTATGTAGTATTTAGATTATTAT AGGCCAAAGTTCAGAGATCATTGTTCCACCCCATTCCAATCTAAAAGTTCAAGAGATTGCATTTTTATTTAAATTGCAAA CGAGTTTCCTTGTAGATTACTACTTTCCTTGTTGAGGAGGGACAAAGGAAGCGGGAAAGGGGAGAATGCTTGCTGTGAGA CATAGTTTTGAAGTTTGACTTGGTTAATGCGTTTTACGATCAAGGTACAACTTCTTGGAGACATATATACCATCTTTCAA GTGAGGTTAACTTACCAGTTCCCCTTTCTACATGTAAGTAGCTTGACATGATTTAAGGCAAACTACATTCTAAGCATGTT ATGTGAACTTAGGATCCCCGAATTTCAGGATGAATTTAGTGTGTGTGTGTGTGTAATTGATTATTCCTTTTTCCTTTCAA CTATGTGGTATTTTGATTGGAATGAGGTGGAACAATGAGATGGGGACCTAATATTTTATGAAAAGCTGGTCACTTTCTGT TGAGAAAGGCTCAATGTATAGGATTTTTTTAGAGATCGCCAATTTGGTGAGATCAGACTTTGGAATGCACTTAGCATTGA TTTTGACACAGCCAGTTGTAAATTAACACAGGAAGCATAATTGTTTCATTTTTTTAGTACCCACCTTTTCCTTTTCACAT CTTTACC
CDS sequence (LotjaGi5g1v0071900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGATCCACAACGCATTGTCTCATAGCCTTCGATTTCAAACACAACAGCAACCCGCCAACACCACCCTCCGCCAGCG CCTCCTCAAAACCCACGGCGGACTCGACTTCACCGCCTATGGCTCCGCCATTCAACACTGCGCTAACCACCGCCTCCTCC GCCAGGGAAAACAGCTCCACGCTCGCCTCTTCATATTCTCCGTCACCCCCGACAACTTCCTCTCCTCAAAGCTCATCACC TTCTACGCCAAATCCAACCTCCCACGCGAAGCGCGCCGCGTGTTCGACGCAATTCCCCGGAAGAACACGTTCTCCTTCAA CGCCATGCTCATTGCTTACTCCTTCAACGGCCTTTACCGCCACTTGCTGGACCTGTTTGCCTCCTCCGTCGACGCTGGAA TCTCTCCTGATAGCTTCACCGTAACCAGCGTCTTGAAGGCGATCGCTTCGCCGTCTTTTTCGTACTATAAACCGGTGAAA GAGGCTCACTGTTTTGTTCTTCGGCGCGGGTTGGAGACCGATATTTTCGTTGAGAATGCGTTGGTGACTTGTTATTGTAG GTGTGGTGAAATTGGGCTTGCGAGGAAGGTGTTTGATGGAATGCCTGAGAGAGATACCGTGTCGTGGAACTCAATGATTG GTGGGTATTCTCAGTGTGGGTTCTATGAAGAGTGTAAGAGGTTGTACATGGAGATGTTGAGTGTAGGGAGTGTTGTGCCG GATGGGGTTACGATTGTGAGCGTGATGCAGGCGTGCGGGCAGTCTAAGGATCTTGTGTTGGGAATGGAGGTTCACGGTTT TGTGAATGAGAGTGGGATTGAGGTGGACTTGCCGCTTTGTAATGCTGTGATTGCGATGTATGCCAAATGTGGGAGTTTGG ATTATGCTCGAGAGCTGTTTGAGGAAATGAGTGAGAAGGATGATGTTAGTTATGGGTCAATTATTTCAGGGTACATGGCT TACGGGTTTGTGGTCAAAGCCAGGGATGTTTTCAGGGGAATGGAAAACCCTGGATTGGATACATGGAATGCTTTGATTTC TGGAATGGTTCAGAATAACTGGTTTGAAGGGGCCATTGATTTAGTTCGGGAAATGCAGGGGTCTGGTTTGAAACCAAATG CTGTCACACTTGCTAGCACTATTCCTTTGTTTTCGTATTTCTCAAACCTGCGAGGGGGGAAAGAGGTGCATGCTTATGCC ATCAGAAGGTGTTATGATCAAAATATATATGTGGCAACTGCCATTATTGATACCTATGCGAAGTTAGGGTTTATTCACGG GGCAAGGCAGGTTTTTGATCAAGCACGAAGTAGGAGCTTGGTAATTTGGACAGCAATTATTACAGCTTATGCAGCTCATG GAGATGCTAGTTTGGCACTTGGTCTCTATGCTCAGATGCTAGATAGTGGAATTCAACCTGATCAGGTGACATTAACTGCT GTATTGACAGCTTGTGCTCATTCGGGACTGGTAGATGAAGCTTGGAAGATCTTCAATACGATGCATTCAAAATATGGCAT TCAACCCTTGGTGGAACAGTATGCCTGCATGGTGGGTGTTCTTAGTCGAGCTGGAAAGCTCTCAGAAGCAGCAAAATTCA TTTCCGAAATGCCAATTGAGCCAAGTGCTAAAGCTTGGGGTGCTTTGCTAAATGGGGCTTCTGTCTATGGTGATGTTGAA ACAGGCAAGTTTGCTTGTGATCATTTGTTTGAGATTGAGCCTGAAAGTTCTGGCAATTACATAATTATGGCAAATCTGTA TTCATGTGCTGGGAGATGGGAAGAAGCTAGTAGGGTTAGGAAAAGAATGGAAGAAATCGGGGTACATAAGATCCGTGGAA GTAGCTGGATTGAAATGAGTGGAAGGTTAATAGCCTTCATTGCCAAAGATGTGTCAAATGAAAGATCTGATGAGATTTAT ACATATCTGGAAGGATTGTTTTGTATGATGAGGGAAGAGGGATATATCTTGCAGGAAGAGTTGGATTGTGAGATGTGGTA A
Protein sequence (LotjaGi5g1v0071900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRIHNALSHSLRFQTQQQPANTTLRQRLLKTHGGLDFTAYGSAIQHCANHRLLRQGKQLHARLFIFSVTPDNFLSSKLIT FYAKSNLPREARRVFDAIPRKNTFSFNAMLIAYSFNGLYRHLLDLFASSVDAGISPDSFTVTSVLKAIASPSFSYYKPVK EAHCFVLRRGLETDIFVENALVTCYCRCGEIGLARKVFDGMPERDTVSWNSMIGGYSQCGFYEECKRLYMEMLSVGSVVP DGVTIVSVMQACGQSKDLVLGMEVHGFVNESGIEVDLPLCNAVIAMYAKCGSLDYARELFEEMSEKDDVSYGSIISGYMA YGFVVKARDVFRGMENPGLDTWNALISGMVQNNWFEGAIDLVREMQGSGLKPNAVTLASTIPLFSYFSNLRGGKEVHAYA IRRCYDQNIYVATAIIDTYAKLGFIHGARQVFDQARSRSLVIWTAIITAYAAHGDASLALGLYAQMLDSGIQPDQVTLTA VLTACAHSGLVDEAWKIFNTMHSKYGIQPLVEQYACMVGVLSRAGKLSEAAKFISEMPIEPSAKAWGALLNGASVYGDVE TGKFACDHLFEIEPESSGNYIIMANLYSCAGRWEEASRVRKRMEEIGVHKIRGSSWIEMSGRLIAFIAKDVSNERSDEIY TYLEGLFCMMREEGYILQEELDCEMW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 154 | 149 | 4.7E-16 | ||
| ProSiteProfiles | 36 | 70 | 35 | 6.478 | ||
| PANTHER | 39 | 149 | 111 | 5.7E-110 | – | |
| ProSiteProfiles | 71 | 101 | 31 | 6.665 | ||
| ProSiteProfiles | 102 | 136 | 35 | 8.78 | ||
| Pfam | 104 | 128 | 25 | 0.56 | ||
| Gene3D | 155 | 305 | 151 | 4.6E-27 | ||
| PANTHER | 161 | 261 | 101 | 5.7E-110 | – | |
| ProSiteProfiles | 174 | 204 | 31 | 8.934 | ||
| Pfam | 179 | 204 | 26 | 0.0044 | ||
| TIGRFAM | 179 | 205 | 27 | 2.8E-4 | ||
| ProSiteProfiles | 205 | 239 | 35 | 11.224 | ||
| Pfam | 205 | 252 | 48 | 1.2E-8 | ||
| TIGRFAM | 207 | 241 | 35 | 5.3E-6 | ||
| ProSiteProfiles | 241 | 275 | 35 | 6.697 | ||
| PANTHER | 260 | 334 | 75 | 5.7E-110 | – | |
| ProSiteProfiles | 276 | 310 | 35 | 9.821 | ||
| Pfam | 280 | 306 | 27 | 1.3E-4 | ||
| TIGRFAM | 280 | 306 | 27 | 1.6E-4 | ||
| Gene3D | 306 | 403 | 98 | 4.1E-16 | ||
| Pfam | 309 | 336 | 28 | 0.0063 | ||
| ProSiteProfiles | 338 | 372 | 35 | 11.093 | ||
| Pfam | 341 | 377 | 37 | 3.3E-8 | ||
| TIGRFAM | 341 | 374 | 34 | 1.7E-8 | ||
| PANTHER | 392 | 603 | 212 | 5.7E-110 | – | |
| SUPERFAMILY | 392 | 575 | 184 | 2.69E-6 | ||
| ProSiteProfiles | 408 | 438 | 31 | 7.235 | ||
| Gene3D | 412 | 621 | 210 | 8.0E-37 | ||
| Pfam | 413 | 438 | 26 | 1.0 | ||
| ProSiteProfiles | 439 | 473 | 35 | 10.808 | ||
| Pfam | 440 | 486 | 47 | 2.3E-9 | ||
| TIGRFAM | 441 | 474 | 34 | 5.1E-6 | ||
| ProSiteProfiles | 474 | 509 | 36 | 9.482 | ||
| TIGRFAM | 476 | 509 | 34 | 4.0E-5 | ||
| ProSiteProfiles | 510 | 540 | 31 | 6.358 | ||
| Pfam | 514 | 537 | 24 | 0.48 | ||
| ProSiteProfiles | 576 | 610 | 35 | 8.484 | ||
| Pfam | 580 | 608 | 29 | 0.0065 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0071900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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