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LotjaGi5g1v0074500.2

Overview

Field Value
Gene ID LotjaGi5g1v0074500
Transcript ID LotjaGi5g1v0074500.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:12353375..12358538) extracted from Lotus japonicus Gifu genome v1.2.

AATAAATCCTAACCTACCCAACCCTACTTCCATAAAGAAATAATATATTACATGTAGACAAGACTATTGGTAGATTTTGT GGTGTGTGTGTAGTGTAGAAGCTAAAAGTAGGTAACCAATGGGAGAAAGCAAGGGAGTGTAAAACAAAACGAACGGTGGT GATACAAGCGACGCCCGTATCCATCGTCACCTCGCTCCTCTCTTCTCCAGCGTCCGATCCCTCTCTTCATTCTCGCGCCA AATCTCATCTCATCAATTCACAGGTAACAACACCACTTCACAGTTCACACTTCACTATTCTATTCACACCCTCTTCTTCC TCATGTTTCTTCTACGATTAGGGTTCCGCCGACCATGGCCGATGCTCCGGCGAGTCCTCCCGACGAGAGCGGCGACCACA GCCCCCGCTCCAGCTTCCGTGAGCAGGATCGTTTCCTTCCTGTTGCTAACATCAGCCGCATCATGAAGAAGGGACTTCCT GCTAATGGCAAAATCGCTAAGGACGCCAAGGAGACTGTCCAGGAGTGTGTCTCTGAGTTCATCAGCTTCGTCACCAGCGA GTAAGCTTCTTCTCTTCATGATTCCCCTATTGTGATTCCTCAGAATAATCATGTTCATGGTTCACAGGGCGAGTGATAAA TGCCAGAGAGAGAAGAGGAAGACTATCAACGGCGACGATTTGCTCTGGGCAATGGCCACTCTGGGTTTTGAAGAGTACAT TGATCCACTCAAGCTTTACCTAGCTGCATACAGAGAGGTGATTTTGAATTTACAATTTTTTTTAATTTCTATGGACTGTT GTTCGTACATAGTTGAATATTCAGCTTCTGGTATTTGGTATTTATGGTACAGCGTGTTGATTTGGTTTGCTGCAGTTAAT TTCCAATTTTCACTGATGGTGTTTTTTTGTTGTTTTTTTTTTTCGTGCGTGGATTTCTCATGGGTTGATTCGAATGTTGC AGATTGAGGTGATCTTAAATAGTTAGCTGTTTTACTTTGTGAATTGTGATTGTTATTCGTGTTTGAGTATGCTTTTTCTA ATGTTTTTTGTACACATTTTTGGTTATGGCTTGTCGAATTGTGGCTTGCAGGGTGATTCCAAAGGTTCGGCTAAGGGTGG AGATGCATCTGGTAAGAAAGATTATCATCCGGGTCCTGATGCCCAGGTAGGGGGAAGATGTGTACTTGTATAGTGGCTGT TTCTGTTTGTGTTACTGGAAATGATTATATTTCGAATGCAGCCGCATCTGATGTTGAAATGTTTTGTTGTGGCATTGACA GCTTGCTCATCAAGGTTCTTACTCACAAGTTGTTAATTACCCTAATTCTCAGGTGATTACTTATGCTTCAAAATGCTATA TATCTATTTTGTGCTTCTGCGGCATTGATAAATGATGATGCTAGGAGCCCAAGGTTTATGTTTAATCTTTGACTTGGTTG GCGATGTAGTATGAGATATTGATGCTTTCTTCACAGGAATGTCTAGTTTTAATCCCTTTTTCTCCCAAAAGCTTCTATTT GGAGCTCATCCTAATTAAAAAGTATTGGCTCTAATGCCATTTTGATTTGTTATTTGAAATTAAAAGACATACTGTTTAAA AGGACCCCTCCTAAAGATTAGAATTATTATCTGGAGAAATACTGTGTGTATAATGGGTAGGTTTAAGGTTTAATGAATTT ATCTGATTTCCTCCTCTCTTCCACTTTCTAAACTTCTTTTTGGTTTATTAAAGGTTATTTGATATGTGTCTATCTTGGTA TGTGCAACTGCATATTGACATGTCTATTTCAGTCATTAATAGAATGTGCAACTGCAAACTATTGAATACCATAAAGCTGC TACTTCCCTGCACTCTTTCGAATTTTCTATTGTTCCTTTAATGGTAGTAGGTTTCTTAAGTGATTTCAGACCCCAACAGT GATAGTTTTCTTGGGCCTGATAATTATTAATGATGAAGTCACGCCATTAACATCAGTTCTTCACTTTTGGTTGTCAACTA TATACTGTATTGACTAAATGCTATTCTATATTGTTAATCTTATGTTTGACTGTTGCTAGCATAGGTTTAGATTAGATAAC TGGAGCTTTTTCCTCCCATTTGCATTCTTACTTAAGCTTGACTTTGGGGAGTTTTGCTTTGCTAGTTTCGATATGCTTTC TTTAATAATAATGCATGTGAAATTATTTTCTTTGGTTGTGCTAGAACATTTTGTGGTTTACCTTGTTATAAGTGAGATAA TGTTTTAGGGCATTAGTTTTAACACCCCCTCAATTAATCCCTCACCCTCCTTTATGCACCAAAATATCTGAAATGCCCTT TAAAATTTAATTTCATTCCAAACATATCACTTTTCCTATCTTATTACTACTATCATTTTTGTTTATCACACCACCCTTCC CTTTTACTCTCATCTCACAGTTTTCTTCGTTGCCACTTTTCACACTTAATATATGTGAAAACATTTCATACATTGTAAGT GTGAACCGATGTATGTTCGTTCTCTCTTCACCTTCTTCCTTTCGTTTTAAGTATTTCACACTCAGTGAGTGGAAAACATT TTCACATTCTTAACACTTGGTTCCTTCACACTCTTGAGGGTGAAATTTGAAAATATTTCACACTCTTGAGTGTGAAATGA AAATATAAAAAAATAATTTTTTTTTTTTAAAAATAAAATTATTAACAGTTCAATAACTCACACTCTTGAGTGTGAAATTT GAAAATGTTTCACACATTTGAGTGTGAAATTTAATTATTAAAAACTAAATATTTAAAATTAAAAATAAAATTCTTAACAC TTGATTCTTTCACACTCTTGAGTGTGAAATTTGAAAAGATTTCACACTCTTGAGTGTGAAATGAAAATTATAAAAAAAAA ATTAAAAAATTATTAACAGTTCAATAACTCACACTCTTGAGTGTGAAATTTGAAAATGTTTCACACACTTGAGTGTGAAA TCTAATTCTAAAGAAACGAAAAATTTAAAATTGAAAATAAAGTCCATTCACACTACTGATCTTGAGTGCGAAACTGAATT GTGTTTCACACCTTTGAGTGTGAAACACAATTGTGCGAATTGAGTATCTTTATTCCCTCTTCATCTTCTTCCTTTCGTTT TAAGCGTTTCACACTTAGTGAATGTGAAATATTTTCACACACATTGAGTGTGAAAATGTTTCACACTTAGTATGTGTGAA AATACTATCACCCTTTGACTATCTCTTTATAAGAGAGGGTATTAAGGGAATTTAGAAAATAAAAGAGGGTGTGAGATTAA TAAGGGGGTGTTAAAACTAATGCCCAATGTTTTATTTAGTGCAAATGCGTAGCAAAATTATGGCATAATCCAAAATGTTT GTGGTGGTGAATACTGGGTTAGATGATCTGTCTTTAGCTCTAAGGTTGCCTAATCCTCAAGAAGTGGCATATACTGGATT GGCTACTTTCTAGTAGTGACATAGATTCAAAAGGTATTTGAAACTGGTATATTAAATGATCCTTCCTTGTCTTTAGAGAA TAGGATCCAAGGGATCAGTGCCTCTGTGTTGCAATTGTCACTACCCTTTTTGTTGTCCTTCATTGTGTTGTACACCACTC TTCCCTAAAGTAGTACTAAGACCATTTTTTCATGGTTTTTAATTTTATGGGTTAATTTTTAATATTAAAGCTGGGTTTTT CAGTTCTTAAATAAATAAATAAAAATACCAAAGCATGTTCTATTTTACCCAATTATTAAAGGTTCATACTTCATCGTGAC ATCATTTCATTTATTTGTAACTGTTTTTCCTTGAATCCGACATATTAGCCTGGCTATGACCTACTATATCGAGTGCGCAA TGTAACTTTTATTTATAATATGGATGACTTCTCTCTCTGTTCTGCAAGTTATATCTTAGTTTAAGGAATGTTTGTTAGAC CAAGCAACAAAATGTTTAGAGATGATGAAATTATAATATTGATTTTCACTCTTTGAATTTCGGTCTCAGGCTCAGCATAT GATGTTTCCTATGCAAGGCCCAGAGTAGATTACTCTCCTTCAGCGTTTGTCATGTGTGATTTGAATGCCGATGGAACTGT AGTATGTACACTTTACATATTGAGAGCATTTCATGTTATATGAATACTCACATTAGGAGATGTTGGTTCTGGTGACCAGA TATTATTTATAAAGGTTTTAATGTTATCTTTGGAGAATAATCATTATTCATAAGTTATATTGTAAATCCTGGAACCATGC TTGCCTATTTCCATCAGGCGTCTTGGCAAAGACTGTAGATTGTATGTGATTTTGATTGGAAACATAAATTGGTATGTTTT CATGCTTTTTGTGTTTTACTTGGATGAAGATGGCGCCAGTTTTTAAAACCTTTGGTTATAGATGTCATGGGGCTGTGCTT TTATGTTGAGCTCAGTCTCTTCAATTCATTTACATGATACATAATGTGTACTTGCATTATGTACAAAAATCAAAACTTTC ATAGTGAGTCTTTTTTTTTTAAAACAGCTGTTAGTTTATAAAAATAGAAAGAAAAAAAAAACTCGTTTGATGTGCGAGGA ATGAGAGTTAATTACTTATGCTTGTTAGGGAATATGGAAAATTGCAATGAGCAAAACTAAACAAGCTGAATGGAGGTCAT ATCCATTCTGAAATAAGTTCTCAAATTAGATTATGAATAAGCGCTTATTACTATAAACTTTGATTAAACTGTTTACCCGA ATGAACCCGTAGAACGGGGAAATATTTTGAACAATTTATACGCATCCATTTGAGTTAATTTAATTTAATTTGCATTCTTG TGAATTCGATGAGTCATGCCTGCACTTGGATGCTGGCCTTTCAATTGTAGATTGCTAGATGAAAAGGAATATTTATTACT TGGAGAGTGATGTATCAATGGTGCTTATCTGCCAGGAGTCCACATCAAGTTTGTTTTTCATGTGCAAGGATGCTTCGCGT GCTCATGGTCCTGTGGCGCACCAGTGAGGCTATTTACCTTCTCCTAGTTGATGTTGAATGACTAGTGTGTGTGTGTTTTT TTGTTTGCCCAAAGAGAGAAAACGGATCTCAATATATAAATGGAGAAATAAAATTTACTACGTTGACTTCAATGTGGATC TAGCTTGTGTCTTTACCCTACCCTGACTTATGTTGATCTAGTTT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0074500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGATGCTCCGGCGAGTCCTCCCGACGAGAGCGGCGACCACAGCCCCCGCTCCAGCTTCCGTGAGCAGGATCGTTT CCTTCCTGTTGCTAACATCAGCCGCATCATGAAGAAGGGACTTCCTGCTAATGGCAAAATCGCTAAGGACGCCAAGGAGA CTGTCCAGGAGTGTGTCTCTGAGTTCATCAGCTTCGTCACCAGCGAGGCGAGTGATAAATGCCAGAGAGAGAAGAGGAAG ACTATCAACGGCGACGATTTGCTCTGGGCAATGGCCACTCTGGGTTTTGAAGAGTACATTGATCCACTCAAGCTTTACCT AGCTGCATACAGAGAGATTGAGGGTGATTCCAAAGGTTCGGCTAAGGGTGGAGATGCATCTGGTAAGAAAGATTATCATC CGGGTCCTGATGCCCAGCTTGCTCATCAAGGTTCTTACTCACAAGTTGTTAATTACCCTAATTCTCAGGCTCAGCATATG ATGTTTCCTATGCAAGGCCCAGAGTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0074500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADAPASPPDESGDHSPRSSFREQDRFLPVANISRIMKKGLPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRK TINGDDLLWAMATLGFEEYIDPLKLYLAAYREIEGDSKGSAKGGDASGKKDYHPGPDAQLAHQGSYSQVVNYPNSQAQHM MFPMQGPE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 24 24 - –
PANTHER
PTHR11064:SF102
11 166 156 2.4E-73 –
PANTHER
PTHR11064
11 166 156 2.4E-73 –
Gene3D
G3DSA:1.10.20.10
17 157 141 3.6E-44
IPR009072
SUPERFAMILY
SSF47113
24 129 106 1.29E-39
IPR009072
Pfam
PF00808
27 91 65 2.3E-27
IPR003958
PRINTS
PR00615
55 73 19 6.1E-20 –
ProSitePatterns
PS00685
58 74 17 -
IPR003956
PRINTS
PR00615
74 92 19 6.1E-20 –
PRINTS
PR00615
93 111 19 6.1E-20 –
MobiDBLite
mobidb-lite
116 149 34 - –
MobiDBLite
mobidb-lite
116 136 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0074500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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