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LotjaGi5g1v0081500.2

Overview

Field	Value
Gene ID	LotjaGi5g1v0081500
Transcript ID	LotjaGi5g1v0081500.2
Related isoforms 2	LotjaGi5g1v0081500.1 LotjaGi5g1v0081500.3
Lotus japonicus genome version	Gifu v1.2
Description	ATP-dependent zinc metalloprotease FtsH; TAIR: AT3G53230.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp\|P54774\|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr\|I1L8Z3\|I1L8Z3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0081500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:13327667..13328752) extracted from Lotus japonicus Gifu genome v1.2.

ATGTGGTTTGGAGAAAGTGAAGCTAATGTCAGGGAAATTTTTGACAAAGCTCGTGGTTCTGCGCCATGTGTCCTATTCTT TGATGAACTTGACTCCATTGCAACTCAGGTTTGTTGTGCCATACTAAGCTATGATTTGGACTTCAGATAAAGCTTTTGTT TTCTAAAACATTGTTTTATTCCCTTAAAAAATATATTAAATACAGCAAGTTAGTGTGCCTATAGGCTCTGCTTAATTTTA TCTTCTTATTAGGTGTATTTAAATTAAATCTTGTGTGCTTTATCTTGCAGAGAGGCAGTAGTGTAGGAGATGCTGGTGGT GCTGCTGATAGGGTTCTGAATCAACTGCTTACAGAAATGGATGGAATGTCAGCGAAGAAAACTGTGTTTATCATTGGGGC CACTAATCGGCCAGACATCATAGACCCTGCTCTTCTACGACCGGGCCGTCTGGACCAATTGATTTATATTCCCCTTCCGG ACGTGGATTCTCGGCATCAGATATTCAAAGCTTGCTTGAGAAAATCCCCCATCTCAAAAGATGTTGATCTTGGAGCTCTT GCCAAGTATACTCAAGGCTTCAGCGGTGCTGATATTACCGAGATTTGCCAGCGTGCATGCAAGTATGCCATAAGGGAGAA CATTGAGAAGGTACAGTTTTTTGAGACCCCTTTTTCACTGTGATATATTTACTAATATACGTTGATTACTATTAAAATTA AAATTTTCAATTGGATTCAACGTAAAGCTAATTTTCCCCCCTAACTTCTCTGGGCAGGATATTGAGAGAGAAAGGAGGAG AAGTGATAATCCTGAGGCTATGGAAGAGGATATTGAAGACGAAGATGTAGCTGAGATAAAAGCAGCTCACTTTGAAGAGT CAATGAAATATGCACGAAGGAGTGTAAGTGATGCTGACATTCGAAAGTACCAGGCGTTTGCCCAAACATTGCAGCAATCA AGAGGGTTTGGATCGGAGTTCAGGTTTGCAGATACCAGTGCCGGTGGGACTGCCGCTGCCGCTGCCGCTGCCACTGATCC ATTTGCAAGTGCTGGTGGTGGTGATGAAGATGATCTATATAGTTAG

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0081500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGTTTGGAGAAAGTGAAGCTAATGTCAGGGAAATTTTTGACAAAGCTCGTGGTTCTGCGCCATGTGTCCTATTCTT TGATGAACTTGACTCCATTGCAACTCAGAGAGGCAGTAGTGTAGGAGATGCTGGTGGTGCTGCTGATAGGGTTCTGAATC AACTGCTTACAGAAATGGATGGAATGTCAGCGAAGAAAACTGTGTTTATCATTGGGGCCACTAATCGGCCAGACATCATA GACCCTGCTCTTCTACGACCGGGCCGTCTGGACCAATTGATTTATATTCCCCTTCCGGACGTGGATTCTCGGCATCAGAT ATTCAAAGCTTGCTTGAGAAAATCCCCCATCTCAAAAGATGTTGATCTTGGAGCTCTTGCCAAGTATACTCAAGGCTTCA GCGGTGCTGATATTACCGAGATTTGCCAGCGTGCATGCAAGTATGCCATAAGGGAGAACATTGAGAAGGAGAAGTGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0081500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII DPALLRPGRLDQLIYIPLPDVDSRHQIFKACLRKSPISKDVDLGALAKYTQGFSGADITEICQRACKYAIRENIEKEK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	1	99	99	1.0E-36	–
PANTHER	PTHR23077:SF152 View details on PTHR23077:SF152 Search for proteins/transripts with this domain View external data on PTHR23077:SF152	1	155	155	1.6E-102	–
PANTHER	PTHR23077 View details on PTHR23077 Search for proteins/transripts with this domain View external data on PTHR23077	1	155	155	1.6E-102	–
Pfam	PF00004 View details on PF00004 Search for proteins/transripts with this domain View external data on PF00004	2	98	97	6.0E-28	IPR003959 Show description in modal box View details on IPR003959 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF52540 View details on SSF52540 Search for proteins/transripts with this domain View external data on SSF52540	2	156	155	4.85E-41	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00009 View details on cd00009 Search for proteins/transripts with this domain View external data on cd00009	9	98	90	1.78592E-13	–
ProSitePatterns	PS00674 View details on PS00674 Search for proteins/transripts with this domain View external data on PS00674	68	86	19	-	IPR003960 Show description in modal box View details on IPR003960 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.8.60 View details on G3DSA:1.10.8.60 Search for proteins/transripts with this domain View external data on G3DSA:1.10.8.60	100	158	59	2.7E-24	–
Pfam	PF17862 View details on PF17862 Search for proteins/transripts with this domain View external data on PF17862	120	155	36	1.7E-13	IPR041569 Show description in modal box View details on IPR041569 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of View details of GO:0008144 View details of GO:0032559 View details of GO:0035639

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0081500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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