Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0082800.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0082800
Transcript ID	LotjaGi5g1v0082800.1
Lotus japonicus genome version	Gifu v1.2
Description	Zinc finger family protein; TAIR: AT2G36930.1 zinc finger (C2H2 type) family protein; Swiss-Prot: sp\|B0BLT0\|ZN593_XENTR Zinc finger protein 593; TrEMBL-Plants: tr\|I3T688\|I3T688_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0082800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:13826596..13828846) extracted from Lotus japonicus Gifu genome v1.2.

GTTTATTTCCTCCGAAACCGCCACACATCTACCGCTCAAAAGTCAAAACATATAAATATGTAATTGTTTTATCAACGAAT TCTACTGAAGCGCCGTCGTTCCATCTTTCTTCTTCACCTTGATAACAAAAACCCTAATTCGAGTCCACAGAAGAAGAAGA CCAACCAAAATCTCAGAAACCCTAACAATCCAGGAACGCGAAAATGGGAGGCAAGTGTCCGCACCGGCACGTGAAGAAGA GAAGATACTCTCACAAAACTGCTCGCCGCACCAAATTCCTCAACATGGATATCCTTTTTGTTGTTCTCTTTGATTTTTTC CCCAACCCTAATTTTCACTTTTTCGAATTTATTTGGATCATGTGATTCTTGACTGGTGAATTCGACACGCGATGATTTGG TTTATGCGCAGCTTAACAAGCCTGATGAAGAGAGGATCCCTTTACCTGTAGATGAAGATTTGCCTGGAATGGGCCAGTAC TATTGCCTGCACTGCGAGTATGTTGCTAAATTCTTATTCTTGATTCTTATGTTGTGCTTTTTTTGATTTATGTAAAAAAG TTTGCAAATTTAATGATTTTGTGATATGGGTATGAAAAGTTTAGTGTGTTAGTGTTACTAGAATACTGCCATACTAAGTG TTGACAGAGGGTTTGGAGCAACTTAGGAGAAAAATATTAGTTTACTGATTATTTAGCGCGTGTTTGGAATCTCTTCTACA ATTGATTTTGAAGCTAGAATAACTTTGGGAAGAGGCTTATGTGAATAGCTTTTGTTATAGAGAAACTGATATTATTTGAA TTGGGCTCAGTTCATTTTAGTTTTCGATTTCATCGTTGTATCCTCTTTTGGTCCATTCTTTTTTAGTTATTGGCTGGGTT TTTATTAAGCAGTGATTTTTCTTTTCATTTCTGCAGCCGATACTTTTCAAATGTAGCTGTGAGGGATGAGCATTTTAAGA GCAAACGACACAAGAAGCGGTATGATATCTCCCTCTCTTATTTTCAATCCTATCAAACATTCTCCCTGTGTTAATATTGG GGAAGAGTTGTTAGATTGATGGTGTCATTTGAGTTTTGAAGTTTTCTGCTTAAGAACACATAAAGCTGTTGGACACTTGG ACGGAACATACCTTAGGCTGTGTTTGACTTGTATACCGAAGAGAACAGAGTAACCTGTCTTGTTCTGTTCTTATTTTTAT TCTACCCTTTTATATAGAGTTAAAATATACTGCTTTTCGCACTGTTTGTGCTGATATCTTTTGCATTTTCAGTATACACC AAACATGCTACATAATCCATATATTTGATTCTGTTTTCTTCTAACGAGCTGAAGCTTGTTTCGCTAAAATATATTAAGGT TTTCGAGTTGAGTTGAACTGAATCCTAGTAAGCTCAAGCGTCATTTACCAAAATATATTGAGCTTGAGCTTAATCAAGCC GATATTTTTGTTTCATCTAGGCTCTGTCAACAAAAGGTGAAATGACCAAACCTTTAACTTCAAAATCACACAAATGTGTA TGTTTGGATTCAAGTTGACATCAACTTGAAAATACATTTGAGCCAAAAGAAACAAGGAGTTCTTTTCATATTAAGGTGTC TCATAACATATGAACTGAAAACCGAGCACACAGGGTGTAATTTCGCACTAATACCAATTGCATTACGAGCATGTTAGCTG CTATCCCACCTTGTTGGAATGCTTTACTTCTGATATTGGTGTTTCTTTGTGCAGTGCAAAACAAATGATGGGACCTGCAC CACATACTCAACTTGATGCGGATTTAGCTGCAGGGATGGGCATGCCTGATAATGGACCAAAGCTGATGTCTATGTAACTT TCTTCTTGAGATTGTCTGAGAAGTTGGTTTTTAGGATATGATGGTGCTAGTTAGTCTATTACACATGAGCAATTTTACTT TCAATATTTTTTTTTTGGTGTCTTGTAATTCCTCCTCCTAATATAAGCCTATTATGTATGGAGCATTTACCAGCAAAATT TTGGACGAGAGCTAGAAGAGCCCCCTTTTAGTAATTTTATTCAGAGTTATCACACTATAAATTGCTAACTAATTATAATA ACAAATGTTGTGGCTTTCTAATAATATAAAAATTAGGTTAAATATGTTCTAGGTTGCTAACATATAGGATTAAATCCATG TAGGTCTTTAGAAATTTTTTTTCCATGACTTTTGGTCCTTAACGAAGCTTTTTTTAATTCAAAAAAGGACAATTGACTTC ATGGTGCTCAC

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0082800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAGGCAAGTGTCCGCACCGGCACGTGAAGAAGAGAAGATACTCTCACAAAACTGCTCGCCGCACCAAATTCCTCAA CATGGGCGATGATTTGGTTTATGCGCAGCTTAACAAGCCTGATGAAGAGAGGATCCCTTTACCTGTAGATGAAGATTTGC CTGGAATGGGCCAGTACTATTGCCTGCACTGCGACCGATACTTTTCAAATGTAGCTGTGAGGGATGAGCATTTTAAGAGC AAACGACACAAGAAGCGTGCAAAACAAATGATGGGACCTGCACCACATACTCAACTTGATGCGGATTTAGCTGCAGGGAT GGGCATGCCTGATAATGGACCAAAGCTGATGTCTATGTAA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0082800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGGKCPHRHVKKRRYSHKTARRTKFLNMGDDLVYAQLNKPDEERIPLPVDEDLPGMGQYYCLHCDRYFSNVAVRDEHFKS KRHKKRAKQMMGPAPHTQLDADLAAGMGMPDNGPKLMSM

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR47444 View details on PTHR47444 Search for proteins/transripts with this domain View external data on PTHR47444	1	119	119	1.7E-66	–
Gene3D	G3DSA:3.30.160.60 View details on G3DSA:3.30.160.60 Search for proteins/transripts with this domain View external data on G3DSA:3.30.160.60	46	109	64	6.2E-28	–
SUPERFAMILY	SSF57667 View details on SSF57667 Search for proteins/transripts with this domain View external data on SSF57667	46	110	65	3.81E-18	IPR036236 Show description in modal box View details on IPR036236 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00451 View details on SM00451 Search for proteins/transripts with this domain View external data on SM00451	56	90	35	2.1E-9	IPR003604 Show description in modal box View details on IPR003604 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF12171 View details on PF12171 Search for proteins/transripts with this domain View external data on PF12171	58	84	27	8.6E-10	IPR022755 Show description in modal box View details on IPR022755 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00028 View details on PS00028 Search for proteins/transripts with this domain View external data on PS00028	61	83	23	-	IPR013087 Show description in modal box View details on IPR013087 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0082800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…