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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0088500 |
| Transcript ID | LotjaGi5g1v0088500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT3G53110.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38; TrEMBL-Plants: tr|A0A151RCB2|A0A151RCB2_CAJCA DEAD-box ATP-dependent RNA helicase 38; Found in the gene: LotjaGi5g1v0088500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15074573..15081185) extracted from Lotus japonicus Gifu genome v1.2.
ATCTTTCTATGAATGAGCATAATTCTTTGGATGAGAGACTTCATTCCTTGACAGGTTGCTTATGTCCAAACTTTGCCGAG GTGAATAAATTGGCTTCCTTGAATGAATTACTTATTGTGTATATTCCATGGGGGGTATCCTTAAAAGGATTGCTTATGTT CGGATTTCTTCGAGACGAGAAAGACGAGGATTACTTCGTCTGGTGAACTGCATCCCTTAATGGGTTGCTTATGTCCAATC TTCATTGAGATAGACTGTATTCCTTGAATGAATTACTTATCGCGACTATTCCGCCTAGTGTCGACAAAATATTGTTGTAA TCTGATCATTAGCGTCTATTTCAAGCTAATATATTATTGTAATCTTGATAGATAATATAGAGTCTGTTTGGATTGCAAAT ATAAAAGTACTTAGTAGAACTCATTTAATTGTTTTTCAAGCAAATCAAGTTTAATAAGATACCCTCCATATTTTCAATTC ATCTACTCTCTCTATTTCTCTCTGTAACAGCAAATTTCAGAACACTTCTACTTTCACTCTCGTCTGCTACTACCATGGCC GAATCTTCCGCCACCGCCACCCCCACCGTCGCCGCCGACACCCCCACCGTCGCAACCGACTCCCCCACCGTCGCCACCGC CACCGCTGCTCCGCCTGCACACAAAAGCTGGGCTGACGAAGCCGACGAAGAAGCCAGTGCCTCGTCGACCGCAACCTCAT CCATCAACCTCGACGGATTAGCGATCGACGAGACCAAGAAGTCACCCAAGCTGTTAGACGATCCCGACGACTCCAATATA CAAGCGGTAACACCCTAATCTTCTTCCTCTTTCTCGGCGGCGAGAATGAAATTCACGGTTTAGGGTTTTGTTTGTGCGTC CAATTTTGGTGCAGGTTTCCTCCGGCGACACTCCGTATACCTCGGCGGCGACGTTTGAAGACTTGAGTCTCTCGCCGGAG CTGGTGAAGGGACTTTACGTGGAGATGAAGTTCCAGAAGCCTAGCAAAATCCAAGGCATAAGCTTGCCCATGATCCTGAG CCCTCCACATAGAGACTTGATCGCACAGGCTCATAATGGTTCCGGCAAGACCACTTGTTTTGTGCTTGGGATGCTTAGTC GTGTTGATCCCAAGTTGCAGGCTCCCCAAGCCCTCTGCATTTGCCCCACCAGGGAGTTAGCTATTCAGGTGATTTTGGGT TCCTTTTTGTGGAGAAAATGTGTCTCATGATGTGTTATTTTCGGGTTTTCGTACTTTTTGATTGGTAATCAAAGGGGAAT TGTTAGTGTTGAATGATGTTGCTTGGGTGTTTATTGTTGTTGTGTTTGTGTGGCAGAATATTGAGGTTTTGCGAAAGATG GGGAAGTATACTGGGATTAGTTCAGAATGTGCTGTGCCCATGGACAGCAGGGATGTGATTCCGATCAACAAACGTCCGCC AGTTATGGCTCACGTGGTCATTGGGACTCCTGGCACCATTAAGAAGTGGATAAGTTTTAAGAAACTCGGGGTGGCGAGGT TAAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGTAATTCAGTATTGCGGATGAACTGTTCTTTGGCTT GTTACATGACCTTATCATTCTTGAATTCTTCCTGATTTTTATTATTACTCTTCCGATTTATTAGTCAATTAGGATAAGTG AATTGGTGTGGTTTAGTGAATTATTATTGCATTTTTTTTTTCCTTTAATTGTTTCTGTTAGCAGGTTTTGGTTTGTAAAT ATGCTGGGGTTTAGTTTCCTTAATTATTCTTAATTGTCGTGTTGCAGGATGGATTTCAAGATGATTCTTTGAGGATAATG AAAGAAATTGAAAAATTGAATTCTGGCTGTCAGGTTTGTTGTACCCTCTTCTGCTTATTGTGCTTGCATGCGTGACATTT CAACATTCAAGAAGTTTTTGCATTGACTTGGATTAAGGCCAATTAGACACATCTTCATTATACATTGATTAACTGCATGA ATATCTGTGTCAAATTACTGCTGCACTTTTAAAATGTTGATATATCAGATTATGGTCGGTTTAGTCTTATGCAACTTGTT TAGACTTTCTTTCTGCAAATATTTCTTCATTTATAGGGACAGTATGCTCATACATATGGATATATGATGTTAGTGGCGGA TTTTGTCTTTTAATTAGTTTCTCAAACTTATACCTATCTAGAGGGGGGGGGGGGGGGGTGGGGGGTGGGGTTGGCGGTGA CGGTGAAGTTCCCACTTCCCACGAGGATCCCCATATTCATGTGGAAATTGCCATCCCTATTCTTGTTTTTTTTGCTTAAA ATGTTATTTAGTTCTTAAAATATAAGGACTTAAAAAAACATGCTTTATATTATTAAAATAAGTTAAATCACGCAAGCCCT GTAGAAAGTGACTTGTATAAAGCCCCTGCCAGTTTTTTTTCTTAGGTCCAAGAATTACGTTTGGAGGGAGCCTCAGGGAA TAACTTGTATAAAGAGTTAGGAGGGAAGTTAGAGAAGAGACAAAGAGATCCGATGAAAATTTTTAAATGGAGAAATTCAA ACATGATGAGGACCACATGTACTTTCCTATTTCGGTTTATGGCTTGGGGGTAAAAGAAATGGACAAGGGAACTCATAAAT TGGCTGGGAGCATTGCTCTTTCATTTCTTTCTAGTGATCTGATTCTGTTCAGTAATACATTTTTGTCTAACTAGGAATTA GAATCTTCAGCTATAAAGATTAAATCTTCTTTTGCTTGATGATCGGTAATGAGTATAACTAAGTTTGGATTTTCGTTGAG GGGAAATATAACTGTTTCTCCTTGCACTTGAATAAACTTTTTACGTAGTTTGGCTATTCCTCAAGTAATTCAAATGCTCG TGTCTTCTTTAATGTGATGTAGTTGATTTTTTCAGTGTTTTTTTGTTACTAAGAATTTTGATTGGGTTGTGATTCTCCAG GTTCTTTTGTTTTCTGCTACTTTCAATGATAAAGTCAAGAACTTTGTTTCAAAGGTAGTTAAGAAGGATCACAATCAACT TTTTGTGAGGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTGCGTTGTCTTGATGAACTCTCTAAGATTG AAGTGATACGGGATTACATATTTGAAAATGGAGAGAACATGGGGCAAACTATTATATTTGTACGCACAAGAAATAGCGCA AAGATGTTGCATAAAGCACTTGTTGATTTGGGCTACGAGGTTACTGCCATACAAGGTGCTCTTAATAATGAAGATAGAGA CAAGATTGTCAAGGAGTTCAGAGATGGGTTAACTCAGGTTCTGATATCAACCGATGTTCTTGCCCGCGGCTTTGATCAAC AACAGGTGCTGAATTGGTTCTGCCCTCTCTCTGTCCCTTCCCTTTTTGTGTATTTACTCACTTGCTTTTCAGTGTGATTA CATCCTTCCACTGTATATTTGTCCAGATTAATTTGGTTATCAACTATGATCTTCCGGTGAAACACACTGCTGAGTATACC CGTGAACCCGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGTTTTGGGCGTAAGGGTAAGTTTTG AAAATTGTCTTCTTGCTATCATGTAGTTCCCATTATTGTTAAAAATTGTTGTAATCAGTGAGCTTCCTATTGTTACTTTT TTATGTGGTGATGGTGTAGCTCATGTAAGTTGGTTAGTTGAACTTTAGCATTGTAAAGAGGTCATGTATCTCTTACAAAT CAATGTGCCCGCTTTAGCCATGCTTTCAATTATATTGCAATGATAAGGGTAGACCTGAGCCCCGGGTAGTTGGAACTTGG TAGGTAATATTTTCCTCCAAAGGAAAATTTAGCTCTCAACTTGTTTCATTGGTTCAAAATTTGATTTTGGCTCTATTATT ACTATGGGGAGCTAGTAATATTTGAAGCATATTGAGTAACGGAAAGTTAATGTTATTTTGGACTTAAAAAAGTCTAGATT AATAATTAGAATTCATAAATTGACCATGTATCTGGATTTTGTTATCTCTAATAAATTTTCACTTTCCACTTAACCAAGCA GACCCTTTGTTGGTCTGATTGATCCCGGTAATTTGTGTTTCTTGGCCCAGGCAATTATTTCAAATGTAGTTTTAATTTTT TGCTTTCTCCTTTTATTTTAATGGAGTTGATTTGTAATTTTGTTCGTCATTAAGTTATTCACAATATTTTCGCTAACAGT GCAAAACTGTTTTTTCTTCCTGACTTGTTTCATTTGATTCTGCAGGGGCTGTATTTAACCTGATATCTGATGAAAGGGAT GCGAACATCATGTCAAAGATTGAAAACCATTTCGGCACCCATGTAACTGAGGTATGCTACTTGATAGTGGTTCTTCGATT ATGATGCTCCATGCAACATTTTAATGATGTTGGATAAGATAAATAATGTGTGAGAAACTGAATTTGATTGAATTACTACC CAAAGACAAATATTATGTGGCTTATATATGAAAATGTAAGCTAATTATTTGTGTTAGGTAACACATTAAGTTTCCATATT AGGGGCAGAAGTGATTCTGGTAGAAGCTATTAGAAGTAGCTTTTGTTGCGGGAGAAGTGATTATAATAAGATTGAAAGTT TATTCGAATATGTTATATGACAGAGCTATACAACAACTAAACGATGATAGCTCAGTAGCTAACTGAGAGTTAACTAACTA AGTATTATTAACATTACTCTTTTGGTTCTTCTTCCCATACCTCTCCCCAGCAAGTTCAAGAATGGTGATAAATACCCACC AATACCATGCTTACCTTTTAAAGCAACACAATGATGGAACGGGATAAGAGACAATTGGGAAGATGTTGACCACTTAGAGA GTGTTTGGTTAAACGTTGAAAGTGGGTAAAACAGAAAACACACGCTTCCCCATGCACGCCAAAGCTCCAAGTTTGTCCCA TTAACAAAAAGGACTTTCACGTTTTTTTCAACACTTGTGCAAACATGCTCTTAATCTTGAGTAGATAAAGGAAGCAATTG TATGAACCCGATTTGAGACGTTCGTGGGTAGCATAATGGCTATCAATATCTAGATGTTTGACCTCTCATGGAAGATGAGA TTAGCTGCAATGTAGACTGCACCTTGACTATTGCAATAGAACAGGAATGAACGAATGAGTGTGTTTGGAAATGAGTTCCA GTGCAGCTAACTAGTAGTGTGTTTGGAAATGAGTTGTGCACACACTCCAAAACACATGTAGTAGAAGCTACATGGGGGTG TTCACTTTAATGTGATTTTCTAACCTCAACGTGGTGTGGTAAATGGTAATGAAGTACCAAATACCCCTAACAGCTGGGTA ACCAAGGAGAATTAACTTACTGTTAGGATTCTAAATATCTAGGTTTAGCTTATTTTAAGAGGTTTTTATTTTGTTTAGGC ATTGATCTTTTATTTTGATTTGGTTATCTTTTAGATTATGAGTAGAGTATCTTTTATTTCTAATGGGTTAAGTCTCTCTA TTAGGATTATTTTATTATAAACAAGAGGCCTCTCATTAGTTTAAGTAGGAATTTGATTATTGAGCTAGTAAGGTTTTTAC CTTGTGAAGGGGTTCCTTTTGTAAAAGAAGGAAATCCTTCTTTGTGTCTTTTATTTAATTTTAAATAATATTCAGAAAAT TCCAGAAATATTACCCTCTTTACTCCTGTTTCCTTTTGTTTGGCTGTTAGGGGAAAACCAACTCTAACACTTACATTACT CTTTCGGTTTTCCCTCCAATACAGCATGATACAAAACATCAATTCTGCAAATTTCAATTGATTTTCTATGCTCGTTGAAA GTGTTGTTAACATGTGCATCTTAAATTCATTTGTTAATGTTACTTGGGATGCAGGTGCGAGAAAAGAGCACTGAAGACTT TAAAGCATGTCTCAAGGAAGCTGGTTTGATATGAAGAAGTCAATAAGTTAAAGGGTGTTGATTACTTCGTTTTTTGCTCT TGAATTTGCAATGATGGCCAAGGATTGGTATCATGGTATCAAATGCTTGAATTATTTCACATGGACACATGCTATCATGG TTTAAATTTTTGGGTGGAGAGTTCCTGTTCAGTCTTGGTTTTTAATGTTATCTTGGTGGATTTTCCTCTTTGATATTTTA CAAGGATTTTTTATTACATATAATAACATTGTAAGTCTATGGATGATCTTGAACATAGAAAATTCCTTGTGGTCGTGTGA TCAAAATGTTAGGCCCCGAGGTGTGAATTCTGGAGTCTGCTGCCCCTAGATGGGAGTTAGAATGTGAAGTTCCCAATACC TATATTGTGGGGGAATAGAGCAAATGTGTCCTTGGGCGAGTGATGTAGATTCTTTGGCGGGGTATAAGTTGAGGTTCATT CTCTTTTTTCTATGTTGTCAGTTTTGATCCTTTTATTAGGTTTGCAGACATTTAACTTGTATGTGGATGTATAATGATGC AAGCGCAAATCTTATCTCCTTACTAATTTCTTCTTTGGTCCTCCCTCCACATAGTTAGCATTGTCACTTTAATAAGTTAT ATCTATCTTAGTAGAAAATGTTATCATTCCACGCCACTTGACCGGTGTTGTCA
CDS sequence (LotjaGi5g1v0088500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAAACTTTGCCGAGCAAATTTCAGAACACTTCTACTTTCACTCTCGTCTGCTACTACCATGGCCGAATCTTCCGC CACCGCCACCCCCACCGTCGCCGCCGACACCCCCACCGTCGCAACCGACTCCCCCACCGTCGCCACCGCCACCGCTGCTC CGCCTGCACACAAAAGCTGGGCTGACGAAGCCGACGAAGAAGCCAGTGCCTCGTCGACCGCAACCTCATCCATCAACCTC GACGGATTAGCGATCGACGAGACCAAGAAGTCACCCAAGCTGTTAGACGATCCCGACGACTCCAATATACAAGCGGTTTC CTCCGGCGACACTCCGTATACCTCGGCGGCGACGTTTGAAGACTTGAGTCTCTCGCCGGAGCTGGTGAAGGGACTTTACG TGGAGATGAAGTTCCAGAAGCCTAGCAAAATCCAAGGCATAAGCTTGCCCATGATCCTGAGCCCTCCACATAGAGACTTG ATCGCACAGGCTCATAATGGTTCCGGCAAGACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCCAAGTTGCA GGCTCCCCAAGCCCTCTGCATTTGCCCCACCAGGGAGTTAGCTATTCAGAATATTGAGGTTTTGCGAAAGATGGGGAAGT ATACTGGGATTAGTTCAGAATGTGCTGTGCCCATGGACAGCAGGGATGTGATTCCGATCAACAAACGTCCGCCAGTTATG GCTCACGTGGTCATTGGGACTCCTGGCACCATTAAGAAGTGGATAAGTTTTAAGAAACTCGGGGTGGCGAGGTTAAAGAT TCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTCAAGATGATTCTTTGAGGATAATGAAAGAAATTG AAAAATTGAATTCTGGCTGTCAGGTTCTTTTGTTTTCTGCTACTTTCAATGATAAAGTCAAGAACTTTGTTTCAAAGGTA GTTAAGAAGGATCACAATCAACTTTTTGTGAGGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTGCGTTG TCTTGATGAACTCTCTAAGATTGAAGTGATACGGGATTACATATTTGAAAATGGAGAGAACATGGGGCAAACTATTATAT TTGTACGCACAAGAAATAGCGCAAAGATGTTGCATAAAGCACTTGTTGATTTGGGCTACGAGGTTACTGCCATACAAGGT GCTCTTAATAATGAAGATAGAGACAAGATTGTCAAGGAGTTCAGAGATGGGTTAACTCAGGTTCTGATATCAACCGATGT TCTTGCCCGCGGCTTTGATCAACAACAGATTAATTTGGTTATCAACTATGATCTTCCGGTGAAACACACTGCTGAGTATA CCCGTGAACCCGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGTTTTGGGCGTAAGGGGGCTGTA TTTAACCTGATATCTGATGAAAGGGATGCGAACATCATGTCAAAGATTGAAAACCATTTCGGCACCCATGTAACTGAGGT GCGAGAAAAGAGCACTGAAGACTTTAAAGCATGTCTCAAGGAAGCTGGTTTGATATGA
Protein sequence (LotjaGi5g1v0088500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKLCRANFRTLLLSLSSATTMAESSATATPTVAADTPTVATDSPTVATATAAPPAHKSWADEADEEASASSTATSSINL DGLAIDETKKSPKLLDDPDDSNIQAVSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDL IAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVM AHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATFNDKVKNFVSKV VKKDHNQLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQG ALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAV FNLISDERDANIMSKIENHFGTHVTEVREKSTEDFKACLKEAGLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| Phobius | 23 | 34 | 12 | - | – | |
| MobiDBLite | 27 | 76 | 50 | - | – | |
| MobiDBLite | 27 | 49 | 23 | - | – | |
| Phobius | 35 | 525 | 491 | - | – | |
| MobiDBLite | 90 | 110 | 21 | - | – | |
| Gene3D | 96 | 333 | 238 | 5.3E-57 | – | |
| PANTHER | 109 | 495 | 387 | 3.9E-97 | – | |
| PANTHER | 109 | 495 | 387 | 3.9E-97 | – | |
| ProSiteProfiles | 117 | 146 | 30 | 9.418 | ||
| CDD | 124 | 323 | 200 | 9.46125E-99 | – | |
| SMART | 137 | 343 | 207 | 3.4E-37 | ||
| Pfam | 143 | 315 | 173 | 3.6E-33 | ||
| ProSiteProfiles | 151 | 327 | 177 | 22.92 | ||
| SUPERFAMILY | 189 | 488 | 300 | 4.68E-57 | ||
| Gene3D | 334 | 522 | 189 | 3.5E-44 | – | |
| CDD | 340 | 484 | 145 | 4.7629E-42 | – | |
| Pfam | 353 | 475 | 123 | 9.0E-25 | ||
| ProSiteProfiles | 356 | 516 | 161 | 19.91 | ||
| SMART | 382 | 475 | 94 | 1.4E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi5g1v0088500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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