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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0094100 |
| Transcript ID | LotjaGi5g1v0094100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidoglycan-binding LysM domain protein; TAIR: AT3G52790.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q55G75|Y7786_DICDI PH domain-containing protein DDB_G0267786; TrEMBL-Plants: tr|I1LZI6|I1LZI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0094100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:16531817..16532832) extracted from Lotus japonicus Gifu genome v1.2.
CTACTTTGCTGAAGAAATAGCCATTTCAACTCCCACATCGAACTGTACCCACTCCAACGACCAGAACAACTTTCTCATTT TACCTATGTCTATATATATTTCCTCTAAAACCAAAGACACAACATTGCCATTTTAGGAATCTTTATTCAAAAACATCCCC TTCAAGAAACTGACATTGTCATGGCTACGAGTTCGTCAACCGAAATGGCAGAGAAGATTTCATGGAACTGTGCTTTGTTT GTGGCACTGATGCTGGTGTTGAGTAGCTGCGAGTCAAGCACTAATGAGCATACGGTGGTTCAGAGGATGCATGAGAATAG TGTGAACAATTACTATAAGGCATGTGATGAGATATACGTGGTTCGTCAGGGAGAGACACTTCAAACAATCGGTGAGAAAT GTGGAGATCCTTATATTGTTGAAGAGAACCCACATATACACGACCCTGATGATGTTTTCCCTGGATTGGTTATCAAGATT AACCCTTATACAAATAGATCATAGAAAAAGGTCTCAATTTAGCCTGGAATGTGTTTTTTTTTTTGGTTACAAAAAATGGT AGAACAGAGAGAAAGCACCTCCAGACTACCGGGCAGGGCGCCAGTGGCATGCTGGGGAGGTCTGGAATGTGTTTTTTCAA CCTGAGGTTCTGGTTCAATAGCCAAAGAAGGTTATAGAAGCATGCCATGTATGTAAGGGTTTATGGTTTGATTGTCCATG TAATTAATTATAGCTCAACTTTCGAAGGAATGAAGCACACCCGTGATAGATACTTAGGTAGACATACATTTTCTGACGAA AAGTCATTAGATAATGTGTGGATTGTTAACCCTTACAATATTTTGTGTCGGTTAAAACTCCTACAAAACAGTATATTTAA AGAGTGTTTGCAGAAAATGAATGTCTAACTACCATTTTCAAAGGATAATATTTAAATGTGGTTATGGACTTTTTTTCTTT AACATTGGACGAATTTCAGATGTATACCTTTTCAACATTTTGATTTGGAAAGTGAC
CDS sequence (LotjaGi5g1v0094100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACGAGTTCGTCAACCGAAATGGCAGAGAAGATTTCATGGAACTGTGCTTTGTTTGTGGCACTGATGCTGGTGTT GAGTAGCTGCGAGTCAAGCACTAATGAGCATACGGTGGTTCAGAGGATGCATGAGAATAGTGTGAACAATTACTATAAGG CATGTGATGAGATATACGTGGTTCGTCAGGGAGAGACACTTCAAACAATCGGTGAGAAATGTGGAGATCCTTATATTGTT GAAGAGAACCCACATATACACGACCCTGATGATGTTTTCCCTGGATTGGTTATCAAGATTAACCCTTATACAAATAGATC ATAG
Protein sequence (LotjaGi5g1v0094100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSSSTEMAEKISWNCALFVALMLVLSSCESSTNEHTVVQRMHENSVNNYYKACDEIYVVRQGETLQTIGEKCGDPYIV EENPHIHDPDDVFPGLVIKINPYTNRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | - | – | |
| SignalP_EUK | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 2 | 106 | 105 | 8.9E-54 | – | |
| PANTHER | 2 | 106 | 105 | 8.9E-54 | – | |
| Phobius | 17 | 27 | 11 | - | – | |
| Phobius | 28 | 32 | 5 | - | – | |
| Phobius | 33 | 107 | 75 | - | – | |
| Gene3D | 46 | 107 | 62 | 3.3E-6 | ||
| CDD | 58 | 100 | 43 | 4.46316E-6 | ||
| Pfam | 59 | 100 | 42 | 4.3E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0094100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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