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IPR018392

Source: InterPro

Description

IPR018392 is a LysM domain.

<p>The LysM (lysin motif) domain is a small globular domain, approximately 40 amino acids long. It is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls [[cite:PUB00001727]], but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis [[cite:PUB00082420]]. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes [[cite:PUB00019876]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 56

Transcript Name Description Predicted domains Domain count
Lj0g3v0057289.1
– PREDICTED: F-box protein At1g55000-like [Cicer arietinum] gi|502117167|ref|XP_004495726.1|
Domains
12
Lj0g3v0102179.1
– PREDICTED: lysM domain receptor-like kinase 4-like [Cicer arietinum] gi|502123143|ref|XP_004498011.1|
Domains
21
Lj0g3v0133279.1
–
Domains
19
Lj0g3v0219829.1
– PREDICTED: lysM domain-containing GPI-anchored protein 1-like [Glycine max] gi|356509418|ref|XP_003523446.1|
Domains
11
Lj0g3v0250579.1
– Peptidoglycan-binding LysM domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297793777|ref|XP_002864773.1|
Domains
5
Lj0g3v0250589.1
– Peptidoglycan-binding LysM domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297820008|ref|XP_002877887.1|
Domains
11
Lj0g3v0307059.1
– PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Glycine max] gi|356524022|ref|XP_003530632.1|
Domains
16
Lj1g3v3834250.1
– LysM type receptor kinase [Lotus japonicus] gi|290490586|dbj|BAI79280.1|
Domains
26
Lj2g3v0039070.1
– Peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] gi|30682281|ref|NP_196437.2|
Domains
7
Lj2g3v0609800.2
– Peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] gi|22327003|ref|NP_197704.2|
Domains
8
Lj2g3v1415410.1
– LysM type receptor kinase [Lotus japonicus] gi|290490594|dbj|BAI79284.1|
Domains
28
Lj2g3v1828320.1
– LysM type receptor kinase [Lotus japonicus] gi|290490598|dbj|BAI79286.1|
Domains
26
Lj2g3v2899900.1
– LysM type receptor kinase [Lotus japonicus] gi|290490582|dbj|BAI79278.1|
Domains
26
Lj2g3v2899910.1
– LysM type receptor kinase [Lotus japonicus] gi|290490580|dbj|BAI79277.1|
Domains
27
Lj2g3v2899920.1
–
Domains
26
Lj2g3v2904690.1
LjNfr1 Nod-factor receptor 1b [Lotus japonicus] gi|37651060|emb|CAE02590.1|
Domains
28
Lj2g3v2904700.1
– CM0545.460.nc [Lotus japonicus] gi|164605539|dbj|BAF98605.1|
Domains
11
Lj3g3v0290100.1
– LysM type receptor kinase [Lotus japonicus] gi|290490568|dbj|BAI79271.1|
Domains
25
Lj3g3v2318170.1
– LysM type receptor kinase [Lotus japonicus] gi|290490570|dbj|BAI79272.1|
Domains
31
Lj3g3v3513710.1
– Peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] gi|30682281|ref|NP_196437.2|
Domains
7
Lj3g3v3523860.1
– Peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] gi|30682281|ref|NP_196437.2|
Domains
6
Lj4g3v0200090.1
– PREDICTED: lysM domain-containing GPI-anchored protein 2-like [Cicer arietinum] gi|502141811|ref|XP_004504650.1|
Domains
18
Lj4g3v0912430.1
– LysM type receptor kinase [Lotus japonicus] gi|290490576|dbj|BAI79275.1|
Domains
25
Lj4g3v0912440.1
–
Domains
19
Lj4g3v2179220.1
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508783082|gb|EOY30338.1|
Domains
11
Lj4g3v3099250.1
– PREDICTED: lysM domain-containing GPI-anchored protein 2-like [Glycine max] gi|356527809|ref|XP_003532499.1|
Domains
16
Lj5g3v2029420.1
– Peptidoglycan-binding LysM domain-containing protein [Theobroma cacao] gi|508775808|gb|EOY23064.1|
Domains
11
Lj6g3v1211490.1
– Uncharacterized protein isoform 1 [Theobroma cacao] gi|508783082|gb|EOY30338.1|
Domains
9
Lj6g3v1812100.1
– LysM type receptor kinase [Lotus japonicus] gi|290490574|dbj|BAI79274.1|
Domains
11
LotjaGi1g1v0062600.2
– Receptor protein kinase, putative; TAIR: AT3G21630.1 chitin elicitor receptor kinase 1; Swiss-Prot: sp|Q6UD73|LYK3_MEDTR LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|Q70KR7|Q70KR7_LOTJA Nod-facor receptor 1b; Found in the gene: LotjaGi1g1v0062600
Domains
28
LotjaGi1g1v0065900.1
– Receptor-like protein kinase; TAIR: AT2G33580.1 Protein kinase superfamily protein; Swiss-Prot: sp|O22808|LYK5_ARATH Protein LYK5; TrEMBL-Plants: tr|D3KU01|D3KU01_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi1g1v0065900
Domains
26
LotjaGi1g1v0259200.1
– LysM domain-containing GPI-anchored protein 1; TAIR: AT1G21880.2 lysm domain GPI-anchored protein 1 precursor; Swiss-Prot: sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1; TrEMBL-Plants: tr|V7AVQ9|V7AVQ9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0259200
Domains
20
LotjaGi1g1v0417200.1
– Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4; TrEMBL-Plants: tr|A0A0B2PYX6|A0A0B2PYX6_GLYSO Leucine-rich repeat receptor protein kinase EXS; Found in the gene: LotjaGi1g1v0417200
Domains
29
LotjaGi1g1v0622300.1
– Receptor-like protein kinase; TAIR: AT3G01840.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9SGI7|LYK2_ARATH Protein LYK2; TrEMBL-Plants: tr|D3KU03|D3KU03_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi1g1v0622300
Domains
26
LotjaGi2g1v0020600.1
– Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G08200.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|A0JNI1|LYSM1_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 1; TrEMBL-Plants: tr|K7LGK8|K7LGK8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0020600
Domains
9
LotjaGi2g1v0180100.1
– Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G23130.1 Peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2; TrEMBL-Plants: tr|I1MQH5|I1MQH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0180100
Domains
11
LotjaGi2g1v0180100.2
– Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G23130.1 Peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2; TrEMBL-Plants: tr|I1MQH5|I1MQH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0180100
Domains
11
LotjaGi2g1v0324000.1
– Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KU53|D3KU53_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi2g1v0324000
Domains
28
LotjaGi2g1v0394950.1
– Receptor-like protein kinase; TAIR: AT3G21630.1 chitin elicitor receptor kinase 1; Swiss-Prot: sp|Q0GXS4|NFP_MEDTR Serine/threonine receptor-like kinase NFP; TrEMBL-Plants: tr|Q70KR1|Q70KR1_LOTJA Nod-factor receptor 5; Found in the gene: LotjaGi2g1v0394950
Domains
25
LotjaGi3g1v0021700.1
– Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ4|D3KTZ4_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0021700
Domains
27
LotjaGi3g1v0371400.1
– Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400
Domains
31
LotjaGi3g1v0371400.2
– Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400
Domains
31
LotjaGi3g1v0371400.3
– Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400
Domains
32
LotjaGi3g1v0371400.4
– Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400
Domains
31
LotjaGi3g1v0375200.1
– Peptidoglycan-binding LysM domain protein; TAIR: AT3G52790.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q1K8F7|CYT19_NEUCR ATP-dependent RNA helicase cyt-19, mitochondrial; TrEMBL-Plants: tr|A0A151UCA6|A0A151UCA6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0375200
Domains
11
LotjaGi3g1v0488900.1
– Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4; TrEMBL-Plants: tr|D3KU02|D3KU02_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0488900
Domains
22
LotjaGi3g1v0528800.1
– Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G08200.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q6DCC7|LYSM4_XENLA LysM and putative peptidoglycan-binding domain-containing protein 4; TrEMBL-Plants: tr|A0A0B2RBC0|A0A0B2RBC0_GLYSO LysM and putative peptidoglycan-binding domain-containing protein 1; Found in the gene: LotjaGi3g1v0528800
Domains
10
LotjaGi4g1v0019700.1
– LysM domain GPI-anchored protein; TAIR: AT2G17120.1 lysm domain GPI-anchored protein 2 precursor; Swiss-Prot: sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2; TrEMBL-Plants: tr|Q2PES0|Q2PES0_TRIPR Putative receptor-like GPI-anchored protein 2; Found in the gene: LotjaGi4g1v0019700
Domains
19
LotjaGi4g1v0114300.1
– Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q0GXS4|NFP_MEDTR Serine/threonine receptor-like kinase NFP; TrEMBL-Plants: tr|D3KTZ8|D3KTZ8_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi4g1v0114300
Domains
26
LotjaGi4g1v0327800.1
– EEIG1/EHBP1 protein amino-terminal domain protein; TAIR: AT5G20610.1 EEIG1/EHBP1 protein amino-terminal domain protein; Swiss-Prot: sp|F4K5K6|PMIR1_ARATH Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1; TrEMBL-Plants: tr|A0A1J7J0U7|A0A1J7J0U7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0327800
Domains
16
LotjaGi4g1v0452500.1
– LysM domain-containing GPI-anchored protein 1; TAIR: AT1G21880.2 lysm domain GPI-anchored protein 1 precursor; Swiss-Prot: sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1; TrEMBL-Plants: tr|I1KQ51|I1KQ51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0452500
Domains
18
LotjaGi5g1v0094100.1
– Peptidoglycan-binding LysM domain protein; TAIR: AT3G52790.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q55G75|Y7786_DICDI PH domain-containing protein DDB_G0267786; TrEMBL-Plants: tr|I1LZI6|I1LZI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0094100
Domains
13
LotjaGi5g1v0221000.1
– F-box protein LysM; TAIR: AT1G55000.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q9FZ32|FB60_ARATH F-box protein At1g55000; TrEMBL-Plants: tr|A0A059PC02|A0A059PC02_CICAR F-box protein LysM; Found in the gene: LotjaGi5g1v0221000
Domains
15
LotjaGi5g1v0305200.1
– Peptidoglycan-binding LysM domain protein; TAIR: AT4G25433.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|P0ADE7|YGAU_ECOL6 Uncharacterized protein YgaU; TrEMBL-Plants: tr|I3T9A0|I3T9A0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0305200
Domains
10
LotjaGi6g1v0000700.1
– Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q0GXS4|NFP_MEDTR Serine/threonine receptor-like kinase NFP; TrEMBL-Plants: tr|A0A1J7H4A0|A0A1J7H4A0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0000700
Domains
31
LotjaGi6g1v0227600.1
– EEIG1/EHBP1 protein amino-terminal domain protein; TAIR: AT5G20610.1 EEIG1/EHBP1 protein amino-terminal domain protein; Swiss-Prot: sp|F4K5K6|PMIR1_ARATH Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1; TrEMBL-Plants: tr|A0A072V6S3|A0A072V6S3_MEDTR EEIG1/EHBP1 protein amino-terminal domain protein; Found in the gene: LotjaGi6g1v0227600
Domains
16

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 1.79