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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR018392
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 56 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.741s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v2904690.1
LjNfr1 Nod-factor receptor 1b [Lotus japonicus] gi|37651060|emb|CAE02590.1| chr2 37916948 37922957 +
2 domain predictions
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Lj0g3v0057289.1
n.a. PREDICTED: F-box protein At1g55000-like [Cicer arietinum] gi|502117167|ref|XP_004495726.1| chr0 18771454 18773249 +
6 domain predictions
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Lj0g3v0102179.1
n.a. PREDICTED: lysM domain receptor-like kinase 4-like [Cicer arietinum] gi|502123143|ref|XP_004498011.1| chr0 43416814 43418351 +
6 domain predictions
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Lj0g3v0133279.1
n.a. n.a. chr0 60952903 60954633 +
3 domain predictions
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Lj0g3v0219829.1
n.a. PREDICTED: lysM domain-containing GPI-anchored protein 1-like [Glycine max] gi|356509418|ref|XP_003523446.1| chr0 112390769 112396865 +
6 domain predictions
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Lj0g3v0250579.1
n.a. peptidoglycan-binding LysM domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297793777|ref|XP_002864773.1| chr0 129906488 129907575 -
3 domain predictions
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Lj0g3v0250589.1
n.a. peptidoglycan-binding LysM domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297820008|ref|XP_002877887.1| chr0 129906561 129907575 -
3 domain predictions
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Lj0g3v0307059.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Glycine max] gi|356524022|ref|XP_003530632.1| chr0 160288512 160290364 +
3 domain predictions
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Lj1g3v3834250.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490586|dbj|BAI79280.1| chr1 43650968 43653558 -
6 domain predictions
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Lj2g3v0039070.1
n.a. peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] gi|30682281|ref|NP_196437.2| chr2 707063 710740 +
4 domain predictions
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Lj2g3v0609800.2
n.a. peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] gi|22327003|ref|NP_197704.2| chr2 8297162 8300360 -
5 domain predictions
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Lj2g3v1415410.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490594|dbj|BAI79284.1| chr2 22444408 22449627 -
3 domain predictions
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Lj2g3v1828320.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490598|dbj|BAI79286.1| chr2 27394729 27397178 +
4 domain predictions
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Lj2g3v2899900.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490582|dbj|BAI79278.1| chr2 37615399 37618756 +
4 domain predictions
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Lj2g3v2899910.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490580|dbj|BAI79277.1| chr2 37622102 37624990 -
4 domain predictions
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Lj2g3v2899920.1
n.a. n.a. chr2 37623260 37625282 +
4 domain predictions
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Lj2g3v2904700.1
n.a. CM0545.460.nc [Lotus japonicus] gi|164605539|dbj|BAF98605.1| chr2 37916954 37918206 +
3 domain predictions
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Lj3g3v0290100.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490568|dbj|BAI79271.1| chr3 1825073 1832536 -
6 domain predictions
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Lj3g3v2318170.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490570|dbj|BAI79272.1| chr3 28753854 28761808 -
4 domain predictions
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Lj3g3v3513710.1
n.a. peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] gi|30682281|ref|NP_196437.2| chr3 42833958 42835941 +
4 domain predictions
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Lj3g3v3523860.1
n.a. peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] gi|30682281|ref|NP_196437.2| chr3 42913510 42915493 +
3 domain predictions
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Lj4g3v0200090.1
n.a. PREDICTED: lysM domain-containing GPI-anchored protein 2-like [Cicer arietinum] gi|502141811|ref|XP_004504650.1| chr4 2480256 2484379 -
6 domain predictions
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Lj4g3v0912430.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490576|dbj|BAI79275.1| chr4 13596272 13598047 +
3 domain predictions
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Lj4g3v0912440.1
n.a. n.a. chr4 13596317 13598047 +
3 domain predictions
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Lj4g3v2179220.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508783082|gb|EOY30338.1| chr4 30118098 30121984 +
6 domain predictions
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Lj4g3v3099250.1
n.a. PREDICTED: lysM domain-containing GPI-anchored protein 2-like [Glycine max] gi|356527809|ref|XP_003532499.1| chr4 41203734 41206549 +
6 domain predictions
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Lj5g3v2029420.1
n.a. Peptidoglycan-binding LysM domain-containing protein [Theobroma cacao] gi|508775808|gb|EOY23064.1| chr5 28673559 28673906 +
3 domain predictions
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Lj6g3v1211490.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508783082|gb|EOY30338.1| chr6 14993748 14998195 -
5 domain predictions
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Lj6g3v1812100.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490574|dbj|BAI79274.1| chr6 20237561 20240568 +
2 domain predictions
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LotjaGi1g1v0062600.2
n.a. Receptor protein kinase, putative; TAIR: AT3G21630.1 chitin elicitor receptor kinase 1; Swiss-Prot: sp|Q6UD73|LYK3_MEDTR LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|Q70KR7|Q70KR7_LOTJA Nod-facor receptor 1b; Found in the gene: LotjaGi1g1v0062600 LjG1.1_chr1 8691405 8697675 -
2 domain predictions
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LotjaGi1g1v0065900.1
n.a. Receptor-like protein kinase; TAIR: AT2G33580.1 Protein kinase superfamily protein; Swiss-Prot: sp|O22808|LYK5_ARATH Protein LYK5; TrEMBL-Plants: tr|D3KU01|D3KU01_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi1g1v0065900 LjG1.1_chr1 9093721 9097010 -
4 domain predictions
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LotjaGi1g1v0259200.1
n.a. LysM domain-containing GPI-anchored protein 1; TAIR: AT1G21880.2 lysm domain GPI-anchored protein 1 precursor; Swiss-Prot: sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1; TrEMBL-Plants: tr|V7AVQ9|V7AVQ9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0259200 LjG1.1_chr1 62836557 62841018 -
5 domain predictions
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LotjaGi1g1v0417200.1
n.a. Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4; TrEMBL-Plants: tr|A0A0B2PYX6|A0A0B2PYX6_GLYSO Leucine-rich repeat receptor protein kinase EXS; Found in the gene: LotjaGi1g1v0417200 LjG1.1_chr1 91121432 91124077 -
4 domain predictions
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LotjaGi1g1v0622300.1
n.a. Receptor-like protein kinase; TAIR: AT3G01840.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9SGI7|LYK2_ARATH Protein LYK2; TrEMBL-Plants: tr|D3KU03|D3KU03_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi1g1v0622300 LjG1.1_chr1 116958389 116960957 -
5 domain predictions
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LotjaGi2g1v0020600.1
n.a. Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G08200.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|A0JNI1|LYSM1_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 1; TrEMBL-Plants: tr|K7LGK8|K7LGK8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0020600 LjG1.1_chr2 7536097 7540114 -
3 domain predictions
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LotjaGi2g1v0180100.1
n.a. Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G23130.1 Peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2; TrEMBL-Plants: tr|I1MQH5|I1MQH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0180100 LjG1.1_chr2 60175267 60178655 -
5 domain predictions
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LotjaGi2g1v0180100.2
n.a. Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G23130.1 Peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2; TrEMBL-Plants: tr|I1MQH5|I1MQH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0180100 LjG1.1_chr2 60175453 60178643 -
5 domain predictions
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LotjaGi2g1v0324000.1
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KU53|D3KU53_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi2g1v0324000 LjG1.1_chr2 79907977 79913419 -
2 domain predictions
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LotjaGi2g1v0394950.1
n.a. Receptor-like protein kinase; TAIR: AT3G21630.1 chitin elicitor receptor kinase 1; Swiss-Prot: sp|Q0GXS4|NFP_MEDTR Serine/threonine receptor-like kinase NFP; TrEMBL-Plants: tr|Q70KR1|Q70KR1_LOTJA Nod-factor receptor 5; Found in the gene: LotjaGi2g1v0394950 LjG1.1_chr2 89244457 89246244 -
3 domain predictions
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LotjaGi3g1v0021700.1
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ4|D3KTZ4_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0021700 LjG1.1_chr3 2315182 2322397 -
5 domain predictions
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LotjaGi3g1v0371400.1
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400 LjG1.1_chr3 76137258 76145648 -
4 domain predictions
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LotjaGi3g1v0371400.2
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400 LjG1.1_chr3 76137258 76145648 -
4 domain predictions
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LotjaGi3g1v0371400.3
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400 LjG1.1_chr3 76137333 76145741 -
4 domain predictions
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LotjaGi3g1v0371400.4
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400 LjG1.1_chr3 76137748 76144932 -
4 domain predictions
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LotjaGi3g1v0375200.1
n.a. Peptidoglycan-binding LysM domain protein; TAIR: AT3G52790.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q1K8F7|CYT19_NEUCR ATP-dependent RNA helicase cyt-19, mitochondrial; TrEMBL-Plants: tr|A0A151UCA6|A0A151UCA6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0375200 LjG1.1_chr3 76797021 76797766 -
3 domain predictions
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LotjaGi3g1v0488900.1
n.a. Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4; TrEMBL-Plants: tr|D3KU02|D3KU02_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0488900 LjG1.1_chr3 90668755 90671193 -
2 domain predictions
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LotjaGi3g1v0528800.1
n.a. Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G08200.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q6DCC7|LYSM4_XENLA LysM and putative peptidoglycan-binding domain-containing protein 4; TrEMBL-Plants: tr|A0A0B2RBC0|A0A0B2RBC0_GLYSO LysM and putative peptidoglycan-binding domain-containing protein 1; Found in the gene: LotjaGi3g1v0528800 LjG1.1_chr3 94550708 94553399 +
4 domain predictions
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LotjaGi4g1v0019700.1
n.a. LysM domain GPI-anchored protein; TAIR: AT2G17120.1 lysm domain GPI-anchored protein 2 precursor; Swiss-Prot: sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2; TrEMBL-Plants: tr|Q2PES0|Q2PES0_TRIPR Putative receptor-like GPI-anchored protein 2; Found in the gene: LotjaGi4g1v0019700 LjG1.1_chr4 2450246 2461606 -
5 domain predictions
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LotjaGi4g1v0114300.1
n.a. Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q0GXS4|NFP_MEDTR Serine/threonine receptor-like kinase NFP; TrEMBL-Plants: tr|D3KTZ8|D3KTZ8_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi4g1v0114300 LjG1.1_chr4 16525759 16528920 +
3 domain predictions
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LotjaGi4g1v0327800.1
n.a. EEIG1/EHBP1 protein amino-terminal domain protein; TAIR: AT5G20610.1 EEIG1/EHBP1 protein amino-terminal domain protein; Swiss-Prot: sp|F4K5K6|PMIR1_ARATH Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1; TrEMBL-Plants: tr|A0A1J7J0U7|A0A1J7J0U7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0327800 LjG1.1_chr4 70577295 70585387 -
5 domain predictions
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