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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036779
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We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.526s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0062600.2
n.a. Receptor protein kinase, putative; TAIR: AT3G21630.1 chitin elicitor receptor kinase 1; Swiss-Prot: sp|Q6UD73|LYK3_MEDTR LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|Q70KR7|Q70KR7_LOTJA Nod-facor receptor 1b; Found in the gene: LotjaGi1g1v0062600 LjG1.1_chr1 8691405 8697675 -
2 domain predictions
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LotjaGi1g1v0065900.1
n.a. Receptor-like protein kinase; TAIR: AT2G33580.1 Protein kinase superfamily protein; Swiss-Prot: sp|O22808|LYK5_ARATH Protein LYK5; TrEMBL-Plants: tr|D3KU01|D3KU01_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi1g1v0065900 LjG1.1_chr1 9093721 9097010 -
2 domain predictions
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LotjaGi1g1v0259200.1
n.a. LysM domain-containing GPI-anchored protein 1; TAIR: AT1G21880.2 lysm domain GPI-anchored protein 1 precursor; Swiss-Prot: sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1; TrEMBL-Plants: tr|V7AVQ9|V7AVQ9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0259200 LjG1.1_chr1 62836557 62841018 -
2 domain predictions
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LotjaGi1g1v0417200.1
n.a. Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4; TrEMBL-Plants: tr|A0A0B2PYX6|A0A0B2PYX6_GLYSO Leucine-rich repeat receptor protein kinase EXS; Found in the gene: LotjaGi1g1v0417200 LjG1.1_chr1 91121432 91124077 -
2 domain predictions
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LotjaGi1g1v0482500.1
n.a. Kinase, putative; TAIR: AT1G16130.1 wall associated kinase-like 2; Swiss-Prot: sp|Q7X8C5|WAKLB_ARATH Wall-associated receptor kinase-like 2; TrEMBL-Plants: tr|D3KU04|D3KU04_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi1g1v0482500 LjG1.1_chr1 99589425 99593281 +
2 domain predictions
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LotjaGi1g1v0622300.1
n.a. Receptor-like protein kinase; TAIR: AT3G01840.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9SGI7|LYK2_ARATH Protein LYK2; TrEMBL-Plants: tr|D3KU03|D3KU03_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi1g1v0622300 LjG1.1_chr1 116958389 116960957 -
2 domain predictions
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LotjaGi2g1v0020600.1
n.a. Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G08200.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|A0JNI1|LYSM1_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 1; TrEMBL-Plants: tr|K7LGK8|K7LGK8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0020600 LjG1.1_chr2 7536097 7540114 -
2 domain predictions
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LotjaGi2g1v0180100.1
n.a. Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G23130.1 Peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2; TrEMBL-Plants: tr|I1MQH5|I1MQH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0180100 LjG1.1_chr2 60175267 60178655 -
2 domain predictions
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LotjaGi2g1v0180100.2
n.a. Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G23130.1 Peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2; TrEMBL-Plants: tr|I1MQH5|I1MQH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0180100 LjG1.1_chr2 60175453 60178643 -
2 domain predictions
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LotjaGi2g1v0324000.1
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KU53|D3KU53_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi2g1v0324000 LjG1.1_chr2 79907977 79913419 -
2 domain predictions
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LotjaGi3g1v0021700.1
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ4|D3KTZ4_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0021700 LjG1.1_chr3 2315182 2322397 -
2 domain predictions
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LotjaGi3g1v0371400.1
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400 LjG1.1_chr3 76137258 76145648 -
2 domain predictions
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LotjaGi3g1v0371400.2
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400 LjG1.1_chr3 76137258 76145648 -
2 domain predictions
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LotjaGi3g1v0371400.3
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400 LjG1.1_chr3 76137333 76145741 -
2 domain predictions
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LotjaGi3g1v0371400.4
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|D3KTZ5|D3KTZ5_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi3g1v0371400 LjG1.1_chr3 76137748 76144932 -
2 domain predictions
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LotjaGi3g1v0375200.1
n.a. Peptidoglycan-binding LysM domain protein; TAIR: AT3G52790.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q1K8F7|CYT19_NEUCR ATP-dependent RNA helicase cyt-19, mitochondrial; TrEMBL-Plants: tr|A0A151UCA6|A0A151UCA6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0375200 LjG1.1_chr3 76797021 76797766 -
2 domain predictions
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LotjaGi3g1v0528800.1
n.a. Peptidoglycan-binding LysM domain protein, putative; TAIR: AT5G08200.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q6DCC7|LYSM4_XENLA LysM and putative peptidoglycan-binding domain-containing protein 4; TrEMBL-Plants: tr|A0A0B2RBC0|A0A0B2RBC0_GLYSO LysM and putative peptidoglycan-binding domain-containing protein 1; Found in the gene: LotjaGi3g1v0528800 LjG1.1_chr3 94550708 94553399 +
2 domain predictions
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LotjaGi4g1v0019700.1
n.a. LysM domain GPI-anchored protein; TAIR: AT2G17120.1 lysm domain GPI-anchored protein 2 precursor; Swiss-Prot: sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2; TrEMBL-Plants: tr|Q2PES0|Q2PES0_TRIPR Putative receptor-like GPI-anchored protein 2; Found in the gene: LotjaGi4g1v0019700 LjG1.1_chr4 2450246 2461606 -
2 domain predictions
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LotjaGi4g1v0114300.1
n.a. Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q0GXS4|NFP_MEDTR Serine/threonine receptor-like kinase NFP; TrEMBL-Plants: tr|D3KTZ8|D3KTZ8_LOTJA LysM type receptor kinase; Found in the gene: LotjaGi4g1v0114300 LjG1.1_chr4 16525759 16528920 +
2 domain predictions
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LotjaGi4g1v0157000.1
n.a. Receptor protein kinase, putative; TAIR: AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3; TrEMBL-Plants: tr|I1KXB8|I1KXB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0157000 LjG1.1_chr4 27345474 27352030 -
2 domain predictions
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LotjaGi4g1v0327800.1
n.a. EEIG1/EHBP1 protein amino-terminal domain protein; TAIR: AT5G20610.1 EEIG1/EHBP1 protein amino-terminal domain protein; Swiss-Prot: sp|F4K5K6|PMIR1_ARATH Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1; TrEMBL-Plants: tr|A0A1J7J0U7|A0A1J7J0U7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0327800 LjG1.1_chr4 70577295 70585387 -
2 domain predictions
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LotjaGi4g1v0452500.1
n.a. LysM domain-containing GPI-anchored protein 1; TAIR: AT1G21880.2 lysm domain GPI-anchored protein 1 precursor; Swiss-Prot: sp|Q93ZH0|LYM1_ARATH LysM domain-containing GPI-anchored protein 1; TrEMBL-Plants: tr|I1KQ51|I1KQ51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0452500 LjG1.1_chr4 82479913 82482791 +
2 domain predictions
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LotjaGi5g1v0094100.1
n.a. Peptidoglycan-binding LysM domain protein; TAIR: AT3G52790.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q55G75|Y7786_DICDI PH domain-containing protein DDB_G0267786; TrEMBL-Plants: tr|I1LZI6|I1LZI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0094100 LjG1.1_chr5 16531817 16532832 -
2 domain predictions
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LotjaGi5g1v0221000.1
n.a. F-box protein LysM; TAIR: AT1G55000.1 peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q9FZ32|FB60_ARATH F-box protein At1g55000; TrEMBL-Plants: tr|A0A059PC02|A0A059PC02_CICAR F-box protein LysM; Found in the gene: LotjaGi5g1v0221000 LjG1.1_chr5 52730900 52733590 +
2 domain predictions
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LotjaGi6g1v0000700.1
n.a. Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|Q0GXS4|NFP_MEDTR Serine/threonine receptor-like kinase NFP; TrEMBL-Plants: tr|A0A1J7H4A0|A0A1J7H4A0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0000700 LjG1.1_chr6 308562 312251 -
2 domain predictions
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LotjaGi6g1v0227600.1
n.a. EEIG1/EHBP1 protein amino-terminal domain protein; TAIR: AT5G20610.1 EEIG1/EHBP1 protein amino-terminal domain protein; Swiss-Prot: sp|F4K5K6|PMIR1_ARATH Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1; TrEMBL-Plants: tr|A0A072V6S3|A0A072V6S3_MEDTR EEIG1/EHBP1 protein amino-terminal domain protein; Found in the gene: LotjaGi6g1v0227600 LjG1.1_chr6 53370977 53375739 -
2 domain predictions
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