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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0101400 |
| Transcript ID | LotjaGi5g1v0101400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme, E2; TAIR: AT2G36060.1 MMS ZWEI homologue 3; Swiss-Prot: sp|Q9SJ44|UEV1C_ARATH Ubiquitin-conjugating enzyme E2 variant 1C; TrEMBL-Plants: tr|I3SG26|I3SG26_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0101400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18257495..18259236) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATATAGAAGGTTTCAATTTGTTGTATGAGTTAATCATGTCCTTCTAATTCGTGGAAAATGATTTTATACTAGTTAA AGATGATATCAAGGTTTGAGTTCGGTATACTTCTTCTGACCCTTGACTTTTAGACATTGAATTTGCTATGGTTAAATGTT TTGGAAATGATTGTGGTATTACATGGAGACATTATTTACATGCATGGTCCGTACAATGTCTTGTTACACGGTGTTAGTCT TGGCTGATTTCGAAGCTGTAAGTGTGTTATTTTTAATGTATTTATAATTATTTGAATGCAGTCCCAAGGAACTTCAGATT GCTGGAGGAACTCGAAAGGGGAGAAAAAGGTATTGGAGATGGCACAGTAAGCTATGGAATGGATGACGGTGATGACATTT ACATGCGCTCTTGGACTGGCACCATCATTGGCCCCCATAATGTAAATTTTTTTGTTACTGCCCTACATTTCTTTTATGTG CGCCTTGAAAACGTAAATTCACATGCAGCAATTGAACATTCTAAAATCTAAGTCCTTACTTCCAGCTTGTATCAACGGAG CATGTTTTACACACACACACACACAAATGTTTACATGAACATATTCTTGTATGTGTAGTATGTAAACCTGCACAGTTTTC ATTGTCTAGTCCAGATTCAAGTCAAGAATTTGGTTAGACTGCTAGATGCTAGCGAACATAACCTTCATGCTTGTGAATGT AAACCTCTGTATTTGTACATACAGACTGACTATTAATGTGTAGCTGTAGTGAGCATAATATTGATGATTCAGAGAAAATT ATAATTGGAAGTGTGATTAGAATAATGTGATTTATCATGTGGTTACAATAGGGTGATCTTTTGGCTTTCTTTAATATAGA ATACTAATGATCTTTCACTTTTCTGTTGGGTCTCTGTCATGACTTGATTAATGTGGCATGTTAAAGAAGTCTGAATTATG AATTATTTGTCTATCCTTACACCTGGAATTTTGGCTCGGTTTGACTCTTTTGTATTGTGCACTTACTTTGATTTGTATAT ACTTAACAAGCTGAGATCCTATAATGTGTTCTTTCTCTTTTATCTTCTCTGTTAGACTGTACATGAAGGAAGAATTTATC AACTGAAGCTGTTTTGTGATAAAGACTATCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGGATCAATATGACTTGT GTTAATCATGAAACTGGAGTGGTATCATTTATAATTTCTTACATTCTTTCATTTTCTTTCATATTCTGTTTCATTCACGG ATAAATCTTGTGCACTGCAATGCTGCTGTGAGATATATGAAGTTACCACTATGCTGTCAAATGCTTTCTTTTATTTTACT GTTGGTGATAACTTTGAGACGTGTTACTAGATATGTAATCAAGATTTTTGATGTGGGTTTTTGGAAACGGAATAATGCCA TATTTATTTAAATCTTCCTTTGTAGGAAAGTACAGGGTTTCCCATCAGTATCACCATCCCGTTCCCTTTATTTTAAATTG ATAACATGAATATCCAGTTCAATTTGCATACATAACTGGTTTTTTTGTGTTGTAAGATTTATAGACTTGTAATTGAAACA GGTTGAACCCAAGAAGTTTGTTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGATATACTAACCCAGCTGAAGA AGGAAATGGCAGCTCCTCACAACCGGAAGCTTGTCCAGCCCCCAGAGGGAACCTACTTTTAA
CDS sequence (LotjaGi5g1v0101400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATGGATGACGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATCATTGGCCCCCATAATCTTGTATCAACG GAGCATGTTTTACACACACACACACACAAATGTTTACATGAACACTGTACATGAAGGAAGAATTTATCAACTGAAGCTGT TTTGTGATAAAGACTATCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAA ACTGGAGTGGTTGAACCCAAGAAGTTTGTTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGATATACTAACCCA GCTGAAGAAGGAAATGGCAGCTCCTCACAACCGGAAGCTTGTCCAGCCCCCAGAGGGAACCTACTTTTAA
Protein sequence (LotjaGi5g1v0101400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWMTVMTFTCALGLAPSLAPIILYQRSMFYTHTHTNVYMNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE TGVVEPKKFVLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| Gene3D | 11 | 129 | 119 | 3.0E-35 | ||
| SUPERFAMILY | 25 | 129 | 105 | 1.11E-23 | ||
| Phobius | 26 | 129 | 104 | - | – | |
| Pfam | 29 | 119 | 91 | 5.5E-10 | ||
| PANTHER | 40 | 127 | 88 | 1.2E-46 | – | |
| PANTHER | 40 | 127 | 88 | 1.2E-46 | – | |
| ProSiteProfiles | 41 | 116 | 76 | 11.063 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0101400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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