Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0102200 |
| Transcript ID | LotjaGi5g1v0102200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P19558|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0102200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18447998..18451801) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTGGGTGGAATAAGCCCCTAATGTGAAAATAATATATAGTAAAAAGCCCCTACCGTCAAGTTTCATTTAATTCTTGC TGATTGTGCAAACGGCGATGACGTAGATTTTCTTGCGTGTAAATAATTCAATTAAAGAGGGTACCACGTAAGTAAATGAG GGTTGAAAAAAAGGTAAAAAACCCAAAATTCCCAAATATACTGAACCCTAAAATCTCAATTCCAGTTTCACGACACGCAA ACGAGCTAGAGGAAGAGCGCTTGCGACGGCGAGAGGGACAGCACAAGAAAATCCACGTCAGCGCCGTTTGCACACAAGAA AATCCACGTCAGTGTCGTTTGTACAATCAGCAAGAATTAAACGGAACCTGACGGTAGGGGCTTTTTACTATATATTATTT TCACATTAGGGGCTTATTCCACCCAAAAAATTTTGTAGGGGCCTTAACCAAAGGACCCCTATTTTAGAGGACCTCCAACA TAGTTAAGCCCTAATTAAATCACCACATGAAAGACGAAGGAGCACAACCACCATGATCTGAATATCCAAAGATGCACTCT ACCTAGATACTCCACAAGGTCCCAAGTTGACTAATTCACGCTGTCCATGATATGATCTTGAAATTGTGCAGAAAACCCAA AATGTCCAGCACGCTCCCAATCAGTTTAAACCAACACAAAACCAATGTCAACTAAGTTATACTTCTGATGCTGAGAAAAG GTTCTGATATCCATTCATAAAAGGAGAAATGGAATCCATTAACCTTCCCTTTAAGTGACAACCATGCTCGATGTTTAGCA CTCTCCATCAAATCTGATCCTTCTTGTGTTGTTCTGTTTCTAAAAACCAATATGTTATGATAGGTCCAAAGGGTCCAGGC CACCGCGAACCATATGAAGCGAATCAGACAATTTTGCTTTGAAGTTAGGAAGGGATAATAGTGTTGTAACTGATGCGATC TGAAGCCCCCCGGGGCAATGTGATCCACCCCAGCCACCTATAGCAACGCGACCATACTTCTGCAGCTAGGGGAAAAAAAT CAACAGGTGATCAAGCGATTCCTCCTCCTGAAGACATACTGGGCAGCACACTTCCTCTGCTGCAGTAACAACATTCCTCC TACGGAGATTGACCCTTGAAGGTAGGCGATCTAATGCCACTCTCCACATGAACAGAGATTTATTCGAAGGGACATTCGAT CTCCAAACAATGCTAAATAAAGGGTTTGTTACCTCACCCGAAGAGCCTTGTAGGAACTTGTATGCCGAATGCACCGTGTA TCGTCCTTCCGGGTTTGTTGTCCATATCCAAGAGTCATTGGAACCCTCTGTCACTGGTATGCTCTCGAGTATCCCACATA AATCTGCCACCAACAAGTTCTCCCGAGTGCTCAAATTCCTCCTCCATTTAAATGACCAAGTCCACATGCCTTCCACTCTC TTTCTCAGATTTATTATGAGTTCAATTTTCTGCACAGATAGGTGAAATAGTTTGCGAAAACTAACACTTAGTGGGGTCCC CCCACACCAAATGTCCTTCCAAAACCGAGTCGAGCCTCCATTCCCCACTCTCTGACGCACACCAACATCAAACCAACAAG TATTTGACTTATCCTCGAAGCACAATTTCACAATGTCGCGCCACCAAATTGAATCATTGGTAGTAAGTAGCATTCAGAAC ACCTGACGTCACTCGATTACGATACCGAGCCCAAAGAACCGTGCCACACAAATCATAGGCCCCATTCATTAATTTCCATC GCCATTTGCCCAGAAGTGCTCTGTTAAAAAGCTCCTAATCCTTTATGCTCAGGTCGCCTTCCACCTTTGGTTTACAAAAC CTGCTCTGAATTAACCCAACAGATTTTCTGAGTCGATTCAGATCCACCCCACAAAAAGGTCCTCATGATTTTCTGGTGTT CTCAAGCTTTTGCCCATTCCAACAGCTCTTCAGGTTGCAGACATGTTCACTAAAGCTCTCCAGCCAAGATTCTTTCAAGG GTTTGTTTCTAAGCTTGGTCTGGTGAATATCTTTCCACCTCCAGCTTGTGGGAGGGTGTGAAAATACAGAATCTCTGAGG ACCATTTACTGAACATAAGTGGACAGAAGTGAAGTATAGGGACTTAGTTGTAAACACTGGTAGTTAGTGCTCATAGCTGA GCTGGCAAGTAATTAGTGTTAGTTAAAACTGATTAGCAGTTAGTTACAAGTTTGTTATTCTGTTTTAGTATAAATAAGCT TTTGTCTTTCTTCTACATTGTAACGAAAATCACATTCAATCAATTAAAAACTCAGATTTCAACTTGTTCTTCAAGCTTCT TCTACAAGCTTGTTCTCTCTTTTCTTTGATGGTATCAGAGCCCTAACCAGGGTTCTGCCATCACCGATTTCCGCTGCTAT GGTGCGACAAGCACATAACAACAACAACAACAATGGAGTTCCTCATGTGGTTCTTGATCCGTCGCAGAATCCAGGATCGC CGTACTACATTCACTCGAGTGATAATCCTTCGGCGACCATGGTGAATCCACCTTTGAATGGCAAGAACTACAATGCTTGG GCAAGATCGATGAAACGCGCGCTTGTGGCGAAAAACAAGTTCCGATTCGTCAATGGCGAAATTCCGGTGCCGGTAGCGAC AGATATGAACTACGAAGCCTGGGATCGCTGCAATAGTTTGATCTATTCATGGATCCTTAATTCGGTAACTACTTCAATTG CAAATAGCATTGTTTTTCTTGAAAATGCCTGTGATGCATGGAGAGATCTGAGAGATCGTTTTTCTCAAGGTGATTTGGTT AGGATTTCAGAATTACATAATGAAATTAGTAATTTGAAACAAAATTCACACACTGTGGATGAATATTACACTGAGTTGAA GATTCTTTCGGAAGAATTGGAGCACTATCGCCCAATTCCACAATGTCGGTGTGCTGTTCCCTATAGATGTGATGCAATTG AGAATGTAAAATTGTTCAGGGAGCAAGATAACACAATCAGGTTTCTTTTAGGTCTGAATGATAATTTTGGAGTGATTAAG TCACAGATTTTGATGAGTTTTCCATTGCCATCAATTGCTAAGGTTGTGTCTTTAGCCATACAACATGAAAGGCAGATTGC TACTGAGGATAATGGAGATTCACTAGCAATAGTGAATGCAGCAGATGGAAGGAAGCCATATGGTAGAGGAAAATCTGGTA GTTCTAGTTACAAGACCACTGGAAAATTCTGCACTCATTGCAAGAAACCAGGTCACACGGTGGAGATTTGCTATAGACTA CATGGATACCCTACCACTTTCAATTCCAGAAATGGTACAAGTCATGCTAATAACACAGCCAGAAATTATGACTCTACTGA TGATCCAGAGGATGACAATTACTCACAAAAGGAGGTTGAAGAGCCTTTCACTGCCGATCAGTACAAAAGAATCATAGCCA TGATCCAACAAGTTACTACAACATCAAAGAAAGCTCCAGATGAATCATGTGGTGAAGGCTGCAACTTATGAAGGAGATGC TTCAAGACATGGTAATCACATGGCTTTATCTTGTTTTCAGCATTATGATAGTAGAGATTGGATCATAGATTCAGGAGCAA GTGATCACATTTGTTTTGACAAATTGTCTTTTAACACACTTGCTGAAGTTAAACCTATTAGTGTTAAGCTTCCTAATGGT GCTATCATCAAAACATGCTATGTTGGGACAGTTAGAATAACACAGTCCATTCTACTAACACATGTTCTCTTTGTGCCTGA GTTTTCTTATAATTTAGTTTCAGTTCATAAGTTAGCAAAAGGAC
CDS sequence (LotjaGi5g1v0102200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCGACAAGCACATAACAACAACAACAACAATGGAGTTCCTCATGTGGTTCTTGATCCGTCGCAGAATCCAGGATC GCCGTACTACATTCACTCGAGTGATAATCCTTCGGCGACCATGGTGAATCCACCTTTGAATGGCAAGAACTACAATGCTT GGGCAAGATCGATGAAACGCGCGCTTGTGGCGAAAAACAAGTTCCGATTCGTCAATGGCGAAATTCCGGTGCCGGTAGCG ACAGATATGAACTACGAAGCCTGGGATCGCTGCAATAGTTTGATCTATTCATGGATCCTTAATTCGGTAACTACTTCAAT TGCAAATAGCATTGTTTTTCTTGAAAATGCCTGTGATGCATGGAGAGATCTGAGAGATCGTTTTTCTCAAGGTGATTTGG TTAGGATTTCAGAATTACATAATGAAATTAGTAATTTGAAACAAAATTCACACACTGTGGATGAATATTACACTGAGTTG AAGATTCTTTCGGAAGAATTGGAGCACTATCGCCCAATTCCACAATGTCGGTGTGCTGTTCCCTATAGATGTGATGCAAT TGAGAATGTAAAATTGTTCAGGGAGCAAGATAACACAATCAGGTTTCTTTTAGGTCTGAATGATAATTTTGGAGTGATTA AGTCACAGATTTTGATGAGTTTTCCATTGCCATCAATTGCTAAGGTTGTGTCTTTAGCCATACAACATGAAAGGCAGATT GCTACTGAGGATAATGGAGATTCACTAGCAATAGTGAATGCAGCAGATGGAAGGAAGCCATATGGTAGAGGAAAATCTGG TAGTTCTAGTTACAAGACCACTGGAAAATTCTGCACTCATTGCAAGAAACCAGGTCACACGGTGGAGATTTGCTATAGAC TACATGGATACCCTACCACTTTCAATTCCAGAAATGGTACAAGTCATGCTAATAACACAGCCAGAAATTATGACTCTACT GATGATCCAGAGGATGACAATTACTCACAAAAGGAGGTTGAAGAGCCTTTCACTGCCGATCAGTACAAAAGAATCATAGC CATGATCCAACAAGTTACTACAACATCAAAGAAAGCTCCAGATGAATCATGTGGTGAAGGCTGCAACTTATGA
Protein sequence (LotjaGi5g1v0102200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRQAHNNNNNNGVPHVVLDPSQNPGSPYYIHSSDNPSATMVNPPLNGKNYNAWARSMKRALVAKNKFRFVNGEIPVPVA TDMNYEAWDRCNSLIYSWILNSVTTSIANSIVFLENACDAWRDLRDRFSQGDLVRISELHNEISNLKQNSHTVDEYYTEL KILSEELEHYRPIPQCRCAVPYRCDAIENVKLFREQDNTIRFLLGLNDNFGVIKSQILMSFPLPSIAKVVSLAIQHERQI ATEDNGDSLAIVNAADGRKPYGRGKSGSSSYKTTGKFCTHCKKPGHTVEICYRLHGYPTTFNSRNGTSHANNTARNYDST DDPEDDNYSQKEVEEPFTADQYKRIIAMIQQVTTTSKKAPDESCGEGCNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 313 | 294 | 1.3E-68 | – | |
| PANTHER | 20 | 313 | 294 | 1.3E-68 | – | |
| Pfam | 32 | 78 | 47 | 6.7E-15 | ||
| Pfam | 97 | 207 | 111 | 1.2E-10 | ||
| MobiDBLite | 302 | 317 | 16 | - | – | |
| MobiDBLite | 302 | 336 | 35 | - | – | |
| MobiDBLite | 318 | 336 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0102200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…