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LotjaGi5g1v0102600.2

Overview

Field Value
Gene ID LotjaGi5g1v0102600
Transcript ID LotjaGi5g1v0102600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Transcription factor; TAIR: AT2G36010.1 E2F transcription factor 3; Swiss-Prot: sp|Q9FNY0|E2FA_ARATH Transcription factor E2FA; TrEMBL-Plants: tr|V7BL69|V7BL69_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0102600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:18569475..18574349) extracted from Lotus japonicus Gifu genome v1.2.

GTTCCCTCCACATCTATCCGAAACAAATTCCCTCCTTCCCTCGTTTTCTACTCCTGCCTCCACACCCTAAACTCCCTCAT TTCCTGCAACCTTTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACCACTCTCTCTCTCTAAAACCCTAGTCCTCT CCGATCGTTCCACCCCAATTCGGATTTCAACCACCGTCTTCCCCCGCCACTCAATGTCCAGCACCGCTGGAGCTTCTGAC AATCGCGCCACGCCACCGCTCCAACCTCCCAACCGCCCACCACTCAAACGCCACCTGGCCTTTGCTTCCACCAAGCCGCC ATTTGCTCCGCCCGATGATTACCACACCTTTTCCGCCGCCGCCACGACCGCCGCTGGTCCCGATTCTAGGAGAGGCGCCC ATCACGAGCCTGAAGCTGTCGTTGTCAGATCTCCGGTGAGTCCTTCTGCTCTGTCTTACTCTGTTGGTGAATAATTGGGT CGTGCTTGTGTTTGGGTATTCCGAATCTGAAATGATTCTTTTGTGTTTTTTTTTGGTTAGGTTTTGTTTTGTTTAATTCT CTTAATTTTTTTCTTTGAATTAGTTGGACTCAGCTTGATATGTTTTTTGATTTTTTGGTTAATTTGAAGCAAATTGTTGA TTGCGTTGTTTTTAGTTGTTTTTTATTACTTTCATGATGAGAAGACTAGTTTGTTTCACAATCCTGGATCCAGACTCGAG TATAGTGTAGAGGGGGGAATTTAGCATCTGCGTTTCGGGTTTATTTTGAAGTAATAGTTGACGATGCGGCAGAGCTAGGG CTTAATTGCAAGACAGTGTGACTTCCTGGTGGGATAAAATGATTTTGTAGGGTGTGTTCATCTGCTGGACTGATTGCCGC TGAAACTGCGAATTCTTGTGCAATTTTAAGTCTTAGTGGCTTATGAACTTCATTTGTGGTTTAGTACGATGAGATTGAGT TGCTCCTGAACTTTTTTCATTTGTGGCGTAATGTGTCCCCCCCTTCCTGTTGGAGAGCTTAGGATCATTATGAGTTATGA CTTATTGTATGTATAAAAGGATAAAATTATAACTCTTGCTTGGTTGGTTGCATTTGGTCACTTTCGTGTGTCTGTATATC TTTGCTCATCTCTTGTCTCTTGCTAATCTTATTATTAATGGAACCTGATGGTGGTGCCAGTTCATAAAGCGGAAGAATGG AATGAATAACAATGAAGGAGACTCACAAAAGTGGGGTAATAGCCCTGGAGGCACTAACGTCATGAATAGTCCTTTTAAAA CTCCTGTGTCTGCAAAAGGGGGAAGGACACATAAGTCAAAAGTTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATC TCAAATGCTGGCAAGAATTCCCCCCCTTATTTTTCCTGTTGAACTAAGTTTACGATTCAATTGAGAATTTTTTAGTGCTT CAAAGCAACTTATATGCTCAATGTGTTTTGCTTCTTCCTTGCTGTACTCCAGCCATAATATTGTGTTTGATCAGACAGTA TTTGTTGACATGCAGGTTCCCCTTCTCCTCTTACTCCTGCTAACAATCGTTATGACAGTTCCTTAGGTAATATTGGAAGA TGTTTTAATCAACAAGCCCCTTACATTTCATTCCCTAATAGGGTATGTCGAATGTAGTTATTTCCAAGTGAAAAAAATGA CAATTGTACAGGAACTTCACAGGTCTTTTGACAAGAAAGTTTATCAATTTGATCAAGCATGCAGAGGATGGAATGCTTGA CCTAAATAAAGCAGCAGAAACATTGGAGGTCCATTTTTTCGTTTAAAAATTACAATCAGAGTACCTGATATTTATTCTTT CTGTATCATATATAAATTTATGTTTTCCTCTTGTATAGGTGCAAAAAAGGAGGATATATGACATAACTAATGTTTTGGAA GGGATTGGTCTCATCGAAAAGAAGCTCAAGAACAGAATACATTGGAAGTAATATGTGGTGCATATTTTTTTTATAAATTG GGTTAAATTTGTTTTTTGTCTTATATAATATGATATTTTTGTTTTTTAGTCCCTATTTAAATTTTGTTTATTTTTAGTCT TTACTTTAACTAAATTGTTTGTTTATAATCCCTTACCCGGGACTAAATAAAAGTATGACTTTTATGTTTTTTGAGAGCTA AATAAATAAAAATTGAATGAAGACTAATTATAAAAATTATCATATTTTCGCAGATCAAAAACATATTTAACCCTTTGTAA TTCCTTTTTATAGAAATGTAGCTTTTCTTTTGTTTAGCTAAAGTTTAGATGTATGCATAAGAGCATAGTTCTTATATCTG ACCCTGTGGAATGTAGGGGAATTGAATCTTCTACGCCTGGTGCGGTTGATGGTGATATCTCTATGCTAAAGGTAAATGAT GTGGATGCTGTTTTCTGTGAGGGACCTATTGACAATGTGACCCAAGGAACTAGCTTATCAGTGTCATTTCCATGGCTCAT GTATCTTTGATTCCATCCATAATGTTTGTAGCAGCACTCAGGCATTTACTGGTTCAGGACCTTTGTTGGTCAAGTTCTAT ATTTATCATTGTTAATTATATAAAAATTTTAAGAGATTAGAATGACTTAGTATGGCTTAGTGTTGCATATTGTTAATTGG GCTGTTTGCCGCGTGGCTTTGACTTAGTATTTGTAGTATGTTATAGCGTATTGTATTGTTAATTATGCCGTTGGACTTTT GGCTGTCTTGCAGGCAGAAACTGAAAAACTTTCTTCGGAAGAGCAGAGATTGGATGATCAGATAAGGTAAAGGTTGCTTT GCAATTGGAAAAGCAGAAATTCCTAGTTTTTTAACTGTTGGCTTAATGCTGATCCTTCTAAAATATTGACAGGGAAATGC AAGAAAAGCTTAGGAGTTTGAGTGAAAATGAAAACAACCAGAAGTAGACTTTTCCAAATTCAGTTTTTAGATTCATTTTT ACTTTGCCCTCCCTTTCATAAGAAAAAATAAACGTGTCATTAAGCAATAAGCCTTATAATGATTTTTCAATTCTTGTTAG GTGCCTTTTTGTGACTGAAGAAGATATTAAAGCCGTTCCTTGCTTCCAGGTGTTTTTTCTTTCCTTTTTATGCATTCCAC TCCCACATTATATATTATTATTATGAATATTGCTGTGTTCTCCTTCCATGCTGATAATATTTGAGGTTTTCTTTTATTAA TACTAGTGTGTTCCTTCGAGCAGAATGAAACTCTGATAGCAATCAAAGCTCCTCATGGAACTACACTGGAAGTCCCTGAT CCTGAGGAAGTAAGTTTAGGGCGTAATTTGCTGAAAGGTTCATGATCTTTTTAAAACTGGTGTTTCTGATGCATGATGGA GAATTATTGCTTCTGTATGCATCAGGCTGTTGACTATCCACAGCGAAGATATAGAATCATTCTTAGAAGCACGATGGGTC CCATTGATGTCTACCTTATCAGGTATAACTGCCACTTCTTTTACTATTATTGTTTCCTTTTATGTTAACCATCACTCCAT ATAGAAATCACACTTTTACTCTGTATTTCATATCATTTGTTTAATAGTTTGCTGGAGTTGTATACTTTGTTGTAGTTTTC TAGTTAATCTATCTAATAATAAATTTTCCATTAATCGTTGTAATTTCTGTACTGCCTCTAGTCAATTTGAAGAGAAATTT GAAGAGATTAATGGTGCTGAGCCCCCCATCAGTCTCCCACTTGCTTCAAGTTCAGGTTCCAATGAGCAGCTAGTGACAGA AACGGTTCCTACTGAATTCAGTGGAATAGGACTTGAGCCTCAAGCTCAGCTCTCTTCTCAAGGGTACTCTGATCTGAATG CTTCACAAGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGCTGATGTAAGTATATTGTAGTAATGATTGTAA GTTCTATTGGCCAAGTTGGCTTATGGTCCTTTAGTTGTTTTCTCATAATTAGCATTAAGTGCTTGGGATAACAGTCATTC TTTGATGTAATGCATTGGCACTTACTGATATTTTTGTAATTTTTGTAGAATGATTCAGATTATTGGCTTTTATCAGATGC TGAAGTTAGCATAACAGATATGTGGAAAACAGATGGTATGCTTTTCAATTTTTTTTGTGCCTTTATATTATCCTTTCTAC CTTTTCTTCTCCTGCCTTATGTCTTCTTTGTAGTAGTTCATCTAATTCCTTAACTCCAACCAAACAGCTAGTGTTGACTG GAATGGAGTGGACATGCTTCATCCTGACTTTGGCTTGGTTTCGAGGCCGCAAACTCCATCATCTGGGTTTGCTGAAGCAC CACCCACAGCAGCTAACTCTAATCAGAGGTGATTCTGATTTGTCTATTAGTGGTATATCAGAAAATATGGTTTGCCTATC ATCCATTGCACAGAGGGAAACTGCTTCAATAGAGTAATTGCTAGCTTTGTGAATGTTGAGGATGCTGTCAGGAGCTGTGT AAATGTCAAGCAGGGAGTTTTTGCTGCACTAAATCATTGACTCTGTTATGAATAAACTAGTTATGATGGACATAATATGC TCATGGAGGATTTAGGTTGGAAGGTAGGGAAGCAGGGACAAGTTTTATTCAGAAAATGTTGCTACTGTATGATTGGAAAG CAGGCTCCATAATCAACATATGGTCATATTATTAGCCATAATTGAAGTCTGTGGCATCGTCGGTTCAATGTTTTTGAAGA TGAGAGAAGCTATGTAGATGCTGTGACTTCAAACAATCTACAAGGGTGGACTGGATATTGTTAGGAGATGAACACCTTAT TATTAAATTATCATTCATGCATTGTAAACATTTGATAAATATTATGCGAGTAAAATTATGTCAATTATTTTCCCA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0102600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCAGCACCGCTGGAGCTTCTGACAATCGCGCCACGCCACCGCTCCAACCTCCCAACCGCCCACCACTCAAACGCCA CCTGGCCTTTGCTTCCACCAAGCCGCCATTTGCTCCGCCCGATGATTACCACACCTTTTCCGCCGCCGCCACGACCGCCG CTGGTCCCGATTCTAGGAGAGGCGCCCATCACGAGCCTGAAGCTGTCGTTGTCAGATCTCCGTTCATAAAGCGGAAGAAT GGAATGAATAACAATGAAGGAGACTCACAAAAGTGGGGTAATAGCCCTGGAGGCACTAACGTCATGAATAGTCCTTTTAA AACTCCTGTGTCTGCAAAAGGGGGAAGGACACATAAGTCAAAAGTTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCA TCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTAACAATCGTTATGACAGTTCCTTAGGTCTTTTGACAAGAAAG TTTATCAATTTGATCAAGCATGCAGAGGATGGAATGCTTGACCTAAATAAAGCAGCAGAAACATTGGAGGTGCAAAAAAG GAGGATATATGACATAACTAATGTTTTGGAAGGGATTGGTCTCATCGAAAAGAAGCTCAAGAACAGAATACATTGGAAGG GAATTGAATCTTCTACGCCTGGTGCGGTTGATGGTGATATCTCTATGCTAAAGGCAGAAACTGAAAAACTTTCTTCGGAA GAGCAGAGATTGGATGATCAGATAAGGGAAATGCAAGAAAAGCTTAGGAGTTTGAGTGAAAATGAAAACAACCAGAAGTG CCTTTTTGTGACTGAAGAAGATATTAAAGCCGTTCCTTGCTTCCAGAATGAAACTCTGATAGCAATCAAAGCTCCTCATG GAACTACACTGGAAGTCCCTGATCCTGAGGAAGCTGTTGACTATCCACAGCGAAGATATAGAATCATTCTTAGAAGCACG ATGGGTCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGGTGCTGAGCCCCCCATCAG TCTCCCACTTGCTTCAAGTTCAGGTTCCAATGAGCAGCTAGTGACAGAAACGGTTCCTACTGAATTCAGTGGAATAGGAC TTGAGCCTCAAGCTCAGCTCTCTTCTCAAGGGTACTCTGATCTGAATGCTTCACAAGAGTTTGCTGGTGGCATGATGAAG ATTGTCCCTTCAGATGCTGATAATGATTCAGATTATTGGCTTTTATCAGATGCTGAAGTTAGCATAACAGATATGTGGAA AACAGATGCTAGTGTTGACTGGAATGGAGTGGACATGCTTCATCCTGACTTTGGCTTGGTTTCGAGGCCGCAAACTCCAT CATCTGGGTTTGCTGAAGCACCACCCACAGCAGCTAACTCTAATCAGAGGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0102600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSTAGASDNRATPPLQPPNRPPLKRHLAFASTKPPFAPPDDYHTFSAAATTAAGPDSRRGAHHEPEAVVVRSPFIKRKN GMNNNEGDSQKWGNSPGGTNVMNSPFKTPVSAKGGRTHKSKVSKEGRSCPPTPISNAGSPSPLTPANNRYDSSLGLLTRK FINLIKHAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTPGAVDGDISMLKAETEKLSSE EQRLDDQIREMQEKLRSLSENENNQKCLFVTEEDIKAVPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRST MGPIDVYLISQFEEKFEEINGAEPPISLPLASSSGSNEQLVTETVPTEFSGIGLEPQAQLSSQGYSDLNASQEFAGGMMK IVPSDADNDSDYWLLSDAEVSITDMWKTDASVDWNGVDMLHPDFGLVSRPQTPSSGFAEAPPTAANSNQR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 147 147 - –
PANTHER
PTHR12081
2 458 457 5.5E-264
IPR015633
PANTHER
PTHR12081:SF79
2 458 457 5.5E-264 –
MobiDBLite
mobidb-lite
58 72 15 - –
MobiDBLite
mobidb-lite
78 107 30 - –
MobiDBLite
mobidb-lite
129 147 19 - –
Gene3D
G3DSA:1.10.10.10
144 217 74 5.3E-29
IPR036388
SUPERFAMILY
SSF46785
148 212 65 3.72E-17
IPR036390
SMART
SM01372
149 214 66 6.6E-34
IPR003316
Pfam
PF02319
151 214 64 7.9E-24
IPR003316
Coils
Coil
165 185 21 - –
SUPERFAMILY
SSF144074
227 331 105 9.68E-33
IPR037241
Coils
Coil
227 268 42 - –
CDD
cd14660
230 331 102 1.71844E-48
IPR032198
Pfam
PF16421
230 329 100 2.2E-34
IPR032198
MobiDBLite
mobidb-lite
446 470 25 - –
MobiDBLite
mobidb-lite
448 470 23 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0005667
Cellular component Transcription factor complex A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0102600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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