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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0108600 |
| Transcript ID | LotjaGi5g1v0108600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi5g1v0108600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20698180..20698606) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTCGTTCCAAGCAGACCGCACGGAAATCCACCGGAGGAACAGGGCCCAGGAAGCAACTAGAGATCAAGGCCGCCCG CAAATCTGCCCTGCCCACCGGAAAAGTGAAGAAGCCCCACCGTTACAGGCCTGGAACTGTTGCTCTAAGGGAGATCCGCA AGTACCAGAAGAGCACCGATCTTCTCATCAGGAAGCTTCCATTCCAGAGGCTGGTCCGGGAGATTGCTCAGGACTACAAG GCCGATCTCCGCTTCCAGAGCTCCGCCGTCTGGGCCCTTCAGGAGGCCGCCGAGGCATATTTGGTCGGGCTCTTCAAGGA CACTAACCTCTGCGCCATTCACGCCAAGAGGGTGACTATCATGCCAAAGGACATTCAACTCGCACGTAGGATTAGAGGCG AGAGGCCTTAGGGATTGTTGTAGAAAA
CDS sequence (LotjaGi5g1v0108600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGTTCCAAGCAGACCGCACGGAAATCCACCGGAGGAACAGGGCCCAGGAAGCAACTAGAGATCAAGGCCGCCCG CAAATCTGCCCTGCCCACCGGAAAAGTGAAGAAGCCCCACCGTTACAGGCCTGGAACTGTTGCTCTAAGGGAGATCCGCA AGTACCAGAAGAGCACCGATCTTCTCATCAGGAAGCTTCCATTCCAGAGGCTGGTCCGGGAGATTGCTCAGGACTACAAG GCCGATCTCCGCTTCCAGAGCTCCGCCGTCTGGGCCCTTCAGGAGGCCGCCGAGGCATATTTGGTCGGGCTCTTCAAGGA CACTAACCTCTGCGCCATTCACGCCAAGAGGGTGACTATCATGCCAAAGGACATTCAACTCGCACGTAGGATTAGAGGCG AGAGGCCTTAG
Protein sequence (LotjaGi5g1v0108600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARSKQTARKSTGGTGPRKQLEIKAARKSALPTGKVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDYK ADLRFQSSAVWALQEAAEAYLVGLFKDTNLCAIHAKRVTIMPKDIQLARRIRGERP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| PANTHER | 1 | 135 | 135 | 1.5E-94 | – | |
| Pfam | 1 | 132 | 132 | 1.0E-50 | ||
| PANTHER | 1 | 135 | 135 | 1.5E-94 | ||
| SUPERFAMILY | 2 | 133 | 132 | 4.46E-53 | ||
| Gene3D | 2 | 136 | 135 | 4.3E-73 | ||
| PRINTS | 3 | 17 | 15 | 1.0E-77 | ||
| PRINTS | 17 | 31 | 15 | 1.0E-77 | ||
| PRINTS | 34 | 55 | 22 | 1.0E-77 | ||
| SMART | 34 | 136 | 103 | 1.0E-71 | ||
| PRINTS | 58 | 75 | 18 | 1.0E-77 | ||
| ProSitePatterns | 67 | 75 | 9 | - | ||
| PRINTS | 80 | 98 | 19 | 1.0E-77 | ||
| PRINTS | 98 | 114 | 17 | 1.0E-77 | ||
| PRINTS | 114 | 135 | 22 | 1.0E-77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi5g1v0108600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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