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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0114800 |
| Transcript ID | LotjaGi5g1v0114800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone-lysine N-methyltransferase; TAIR: AT5G06620.1 SET domain protein 38; Swiss-Prot: sp|Q9FG08|ATXR4_ARATH Histone-lysine N-methyltransferase ATXR4; TrEMBL-Plants: tr|A0A1J7IDD2|A0A1J7IDD2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0114800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:23395415..23399209) extracted from Lotus japonicus Gifu genome v1.2.
TTTATTGAAGTACACTCATATGTGGGAACTGGCCATTTCACGCTTGAGAAGAAGAAAAATAAGAAGATGGCAGTGACACG CTCACTCCCACTCCGCTTGGCCATTTCACACTTCACTAAACCATTTCACCACTTCTCCTTCTCTACCTCCACCACCGCAC CGCCACAACACCCTCCTCCCATCCGAGTCGCTCTCACTGACTCAGTCGGCCGCGCCGTCTTCGCAACTCGCCCGATCCCT TCCGGTGATCTCATCCACACCGCCCAACCCGCCGTCTGCCACCCTTCTCCCTCCGCCGTCCACTCCGTCTGCTATTCCTG CCTCGCCTCTCTGTCCTCATCAATACCCCAATGCACCCCGTTTTGCAGCCACCATTGCCACCAACGCTCTAAGGTTTTCC CTTTCCATACCTTATTACAAATTTGAGCAGCTTTTATGCCAATTTTGTAGTTTCATTCAGTCAATATAAATGCATAGTAT ATGGAGTTTGTATAAAATGCAGTGAACAAACATGTATTTTTTGCTTAGTTATGTACTTATTTTGAGGTTTTGATATTATT TAGGACTATTACGATGTTGAGATGAAAGCGAATTGGATGGACTTTGATAACTATTGCCGGTATGAAAGTTTGTTTCTAGC ATCAAAAGATTAATTGGCATCTTCAATTATGATGGGTTTCAACAATCTTCTAAACCTGTGTGAATAAAGATTTATACATC ATTTTATTTCCTCGGCGTCATTGGGACTAATTTTGCTCTTTGGTTTTGTATGTAGCCTAATGGTTTCTATGAACCATAAT TCTTGAATTCAAAATAAAAGAAAGCACTTGAATCTTTAATACAAATTCTGGCTAAGTTCACTTGTTTGTTTATGGAGTAA GTATGGTACAATGGAAAGGAGCAAAAAGGACAAAGGAGCTATATGATCATCCCTGATTAGTCGTTTTGAATGTTTGTAAC ATGTATTGATGGTTTGAAACTTTGGGTGCATTTGAGTAAACGGCTTAATTAAGCGCTGATGGCAATAAGTGCTTATCTCA TAAGCACTTATTCATAAGCTAATTTGAGAAACTTTTTTAAAGAAGCTCAAAATAGGTTATGGATAGACACAAGCTCTTAT TTATAAGCTATTCTGAACAATTTATGAAAATAACCTCAAACAGCTTATATGTAGGTCATGAGCTTTTTACATAAGTTGTC CCGAACACTTGCATTTGAGCTTATACTGTAAGATAAGCTCAAATAAGCTCTTCCAAACAGGACCTTTATGTACTATACTC AAAGTTATCTAATTTAGCAGTTGTCACTTGTCATAACACAACTTCTAATCAATCTAAACATTATGGATTGCCATTACGAT ACATTGTTGGACTTTATGTTAACACTTGACACCATAGCTGATTATTTAGTATTTTATTGTTCGTAAGTTAAATCAGTGAC ACTTATTTGACCTCTTTATGAAGGACCCGTGGTTTGAAATATCCATTTATGGTAAAGAGGTTGGCTTGTATGGTCGTATC AGGAGTTTCCAAAAGTGACAGTCTTGACATACTTCAGCCTGCCAATTTGACACCTGAGATGATTTTAGAGGTGAGACATT TTGAAGTTTATGATTATAATGTCGATAAAAGGTACTAATTATATTAGCTGGCAGATTTCTTCTAAACCCAATAAAAACTA AATCATGAATGAAAGTCAATTAGTTTTCTTGTGAACTTTTGAATGAATGGAACTCTTTGCTATTTTCTTGGTAAAAGTGA AAATGGGAAGGCAGACACCCCAGAGGTAGAAAGTGTGTCTAAACTTATTATGTCCAAATAAATAGGTAGCATTTTCATCT TCCTTTTTTCACTTATTCCTATCATCCACTAATGTTGGAAAGACAAGCTTTCTGGTGTAAATGGTTGCATTTCTTATAAA TTGTTCATTAGAACAGGAGTAAACAGTTATTGATGTTTAAATTAAAATTTGTAGTGATTTGTGATTGTTTAGCTTTGGAA TCAGTATTTTACTGCTGTAATCTATTTATGCATATGTTCATTTTTCAGATGGAGGAGGAGTTTTCCTTGCTAAGGAGTGC CTTCACGAAGGCACTTATTGCGGATGAACATATTGCTTGTATCCTCCTTATGTCAGGAACATTTTGTTTGTAGTAGATAC ACAGCACACACATACATGATGAGTACACAGATATAAATTGATGGACTACTTATCTTGACATTCCAAGTTTTGACCAAGCA ATGGTACATTAATGTTTTGGCCCGAATTCGAATCAATGCATTTCGCATTGAATTGGCTGGTGGACTATATGAAGATCTCC TTGCATCAGCAGTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTATATGCTTCCTTCCTTCTATAATCAT GATTGTGGTCAGTATAATTATCTCTTTTCTCAGTTTCTGTCATCAAAATGGCCTAGATTTCTTTTTCTCTTTTTCCATTC TTTTGTTTGCTTGACCAAGCTTTCCAACTTAAGCAGATCTTTTAAATTATTCATAAATCACAGACTGCTGAAAACGATAA AAGTTAATTTTAACAAGCATTTTGGTTTCATGTTTAAGCGATTTTGTAACTAAATGGTTATAAGTCGCGTACAAATGCGC ACAAAGTGAGGGATAGAGAGTTGACCTCCCTAAACCTTGTAGCTTTTACCTTGAAAAATGAGCAATCAAACTTCTTGGTG TTGCAGATCCTAATGCACATATTATATGGATAGACAATGCAGATGCAAAATTGAAGGCCCTCCGTGACATTGATGAAGGT TTGTTATAAATAGTTTTTTCTTTGTTAAAAATGTTTTCCCCTTCTAATTCTGTTGGTTGTCTCATCCAGAAAGTAGTGCA TTCAATGATTTTTGAAGAAATTCAACTCATTTTGATGTATTTCTATGTGACAGTTCTAGCTTCTGACTTTTTCTGACAAC ATACTGGAAGACTATTTGATGGTTTCTGAAAATATTCTACTTATTTTGATGTATTTACATGTGACAGTTCTGAGATTTTT CTGACAACATATTGTGTTGATGATTCATATAGCCAACTCTATCTAGGGTGATATGGCTGATTTGTTATGGATCTTGGGAA ACTGGTTTTCCTTGCTGATTTGAAATGCTTCCGTGAAACTATCATTGATCAACTTAAGTTTTCTCTTTGGTAAACTGCAG GTGAAGAACTCAGAATCTGCTATATCGATGCCAGCCTGGACCGTGATGCTAGGCGAGAACTATTATTTCGAGGTTTTGGC TTTCAATGCAATTGTAGTAGGTGCTTGCATGGCGATTAGCTGTGATTCTCTAAAGATATTCTCCTAGGTTTTGCAATATA AACTGGTTGTAACAATGAACTGCGTAGGAAACATTAACAAAGGTTTGTCTTTTTCCAACTTTACTGTGATCTGTATTACT GTTATTGTTATTGTTGGTCTAAAATCCCCCACTGCATTTCCAGGGATGAAGTCTGGAACGAATACTATGAATTCACAATC CCGAGTAATGGATTTTAATTTGTCATTGTCAATACTCAATAGAGTATACATGCACTCAGTGACTGCAGAGGAGTTATAGT GAAGGGGTTCAAGTTTTGATTTTCATACTGAAACCAATAACAGGGCCAAAAAAGACAACGACATGTAAAACTGCTTCGCT GTAGTTTTGGTATTCAGTTAAAGGTATATGAACTTTAGTCTTGAACTTAAAGAAAATGATCCTAATATCACAAGCTCCAT TAGATTTTGATGGAAATTAAACAAACCGATCACAA
CDS sequence (LotjaGi5g1v0114800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAAAGAGGTTGGCTTGTATGGTCGTATCAGGAGTTTCCAAAAGTGACAGTCTTGACATACTTCAGCCTGCCAATTT GACACCTGAGATGATTTTAGAGATGGAGGAGGAGTTTTCCTTGCTAAGGAGTGCCTTCACGAAGGCACTTATTGCGGATG AACATATTGCTTTTTTGACCAAGCAATGGTACATTAATGTTTTGGCCCGAATTCGAATCAATGCATTTCGCATTGAATTG GCTGGTGGACTATATGAAGATCTCCTTGCATCAGCAGTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTA TATGCTTCCTTCCTTCTATAATCATGATTGTGATCCTAATGCACATATTATATGGATAGACAATGCAGATGCAAAATTGA AGGCCCTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATCGATGCCAGCCTGGACCGTGATGCTAGGCGA GAACTATTATTTCGAGGTTTTGGCTTTCAATGCAATTGTAGTAGGTGCTTGCATGGCGATTAG
Protein sequence (LotjaGi5g1v0114800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKRLACMVVSGVSKSDSLDILQPANLTPEMILEMEEEFSLLRSAFTKALIADEHIAFLTKQWYINVLARIRINAFRIEL AGGLYEDLLASAVASVEAEAAVGNAVYMLPSFYNHDCDPNAHIIWIDNADAKLKALRDIDEGEELRICYIDASLDRDARR ELLFRGFGFQCNCSRCLHGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 176 | 176 | 2.1E-75 | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 176 | 176 | 2.1E-75 | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 180 | 162 | - | – | |
| ProSiteProfiles | 37 | 150 | 114 | 11.949 | ||
| Pfam | 58 | 149 | 92 | 4.0E-10 | ||
| Gene3D | 68 | 180 | 113 | 1.1E-26 | – | |
| SUPERFAMILY | 104 | 176 | 73 | 3.53E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0114800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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