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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0122500 |
| Transcript ID | LotjaGi5g1v0122500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome c biogenesis; TAIR: ATMG00960.1 Cytochrome C assembly protein (ChrM); Swiss-Prot: sp|Q04647|CCBS_DAUCA Probable cytochrome c biosynthesis protein; TrEMBL-Plants: tr|R4IV25|R4IV25_VICFA Cytochrome b biogenesis FN; Found in the gene: LotjaGi5g1v0122500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:25855490..25856107) extracted from Lotus japonicus Gifu genome v1.2.
TTTAACACAACAAGACAATTAAACGATAGATTGTTCAACAACCAACAGTACAAAATCAAAGCTCTCTCAAACAGTAATGG TGTCATCATTCCTTTCTCCATCATCAGTGAACAGAAACGAGGTAGTTTTGAACAAATTTGGATCTTGACATGTCGGTGGT TTTTAACCGTGGGCATCATGCCAGGAAGTTGGTGGGCTCATCATGAATTAGGTCGGGGTGGCTGGTGGTTTCGGGATCCC ATAGAAAATGCTTCTTTTATGCCTTGGGTATTAGCCACAGCTCGTATTCATTCCGTAATTCTACCCCTTCTTCATTCTTG GATCTCGTTTCTGAATATTGTGACTCTTCCATGCTGTGTCTCAGGAACCTTTTCAATAACGTCCGGATTGCTAGCTTCCG TTCATAGTTTTGCTACAGATGATACACGAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCTATAATT CTTTTCTCCCAGATGAAGCAGCAGGCATCGGTCCGTAGAACTTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGT GCACCTCCGTCACTCGGCTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGA
CDS sequence (LotjaGi5g1v0122500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGGAAGTTGGTGGGCTCATCATGAATTAGGTCGGGGTGGCTGGTGGTTTCGGGATCCCATAGAAAATGCTTCTTT TATGCCTTGGGTATTAGCCACAGCTCGTATTCATTCCGTAATTCTACCCCTTCTTCATTCTTGGATCTCGTTTCTGAATA TTGTGACTCTTCCATGCTGTGTCTCAGGAACCTTTTCAATAACGTCCGGATTGCTAGCTTCCGTTCATAGTTTTGCTACA GATGATACACGAGGAATCTTTTTATGGCGGTTCTTCCTTCTAATGACCGGCATATCTATAATTCTTTTCTCCCAGATGAA GCAGCAGGCATCGGTCCGTAGAACTTATAAAAAAGAGATGGTTGTGGCGCGAAGTACTCTTGTGCACCTCCGTCACTCGG CTCGCGCGCAACCCCGCCCCGTTATGTTATGGAAGAATTGA
Protein sequence (LotjaGi5g1v0122500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPGSWWAHHELGRGGWWFRDPIENASFMPWVLATARIHSVILPLLHSWISFLNIVTLPCCVSGTFSITSGLLASVHSFAT DDTRGIFLWRFFLLMTGISIILFSQMKQQASVRRTYKKEMVVARSTLVHLRHSARAQPRPVMLWKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 131 | 131 | 5.0E-76 | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 131 | 131 | 5.0E-76 | – | |
| Pfam | 3 | 70 | 68 | 3.1E-14 | ||
| PRINTS | 22 | 42 | 21 | 1.7E-33 | ||
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 27 | 45 | 19 | - | – | |
| PRINTS | 39 | 60 | 22 | 4.0E-21 | ||
| Phobius | 46 | 51 | 6 | - | – | |
| PRINTS | 48 | 68 | 21 | 1.7E-33 | ||
| Phobius | 52 | 75 | 24 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| PRINTS | 68 | 84 | 17 | 1.7E-33 | ||
| Phobius | 76 | 86 | 11 | - | – | |
| PRINTS | 84 | 103 | 20 | 1.7E-33 | ||
| TMHMM | 86 | 104 | 19 | - | – | |
| Phobius | 87 | 104 | 18 | - | – | |
| PRINTS | 89 | 109 | 21 | 4.0E-21 | ||
| Phobius | 105 | 146 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Heme transporter activity | Enables the directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells. | ||
| Biological process | Heme transport | The directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Cytochrome complex assembly | The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions. | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi5g1v0122500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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