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IPR002541 is a Cytochrome c assembly protein.
<p>This domain is found in various proteins involved in cytochrome c assembly from mitochondria, chloroplast and bacteria; including among others CycK from Rhizobium leguminosarum [[cite:PUB00002276]], CcmC and CcmF from Escherichia coli [[cite:PUB00002274]], CcsA from Chlamydomonas [[cite:PUB00070851]], and orf240 from Triticum aestivum (wheat) mitochondria [[cite:PUB00003769]].</p> <p>CcmC interacts directly with heme, and it is the only protein of the ccm operon that is strictly required for heme transfer [[cite:PUB00070849]]. CcmF contains a b-type heme and is thought to be a cytochrome c synthetase [[cite:PUB00070854]]. CcsA is required during biogenesis of c-type cytochromes at the step of heme attachment [[cite:PUB00070851]]. R. leguminosarum CycK and wheat orf240 also contain a putative heme-binding motif [[cite:PUB00002276], [cite:PUB00003769]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cytochrome complex assembly | The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions. | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Cytochrome c biogenesis C (mitochondrion) [Glycine max] gi|476507671|ref|YP_007516851.1| | 11 | ||
| – | Cytochrome c biogenesis FN [Vigna radiata] gi|323149043|ref|YP_004222823.1| | 11 | ||
| – | Cytochrome c biogenesis protein [Lotus japonicus] gi|13518486|ref|NP_084844.1| | 11 | ||
| – | Cytochrome c biogenesis FN [Vigna radiata] gi|323149043|ref|YP_004222823.1| | 13 | ||
| – | Cytochrome c biogenesis FN [Vigna radiata] gi|323149043|ref|YP_004222823.1| | 13 | ||
| – | Cytochrome c biogenesis; TAIR: ATMG00960.1 Cytochrome C assembly protein (ChrM); Swiss-Prot: sp|Q04647|CCBS_DAUCA Probable cytochrome c biosynthesis protein; TrEMBL-Plants: tr|R4IV25|R4IV25_VICFA Cytochrome b biogenesis FN; Found in the gene: LotjaGi5g1v0122500 | 12 | ||
| – | Cytochrome c biogenesis protein CcsA; TAIR: ATCG01040.1 Cytochrome C assembly protein (ChrC); Swiss-Prot: sp|Q9BBP4|CCSA_LOTJA Cytochrome c biogenesis protein CcsA; TrEMBL-Plants: tr|A0A0K0LNH5|A0A0K0LNH5_WISFL Cytochrome c biogenesis protein CcsA; Found in the gene: LotjaGi5g1v0223100 | 11 | ||
| – | Cytochrome c biogenesis protein CcsA; TAIR: ATCG01040.1 Cytochrome C assembly protein (ChrC); Swiss-Prot: sp|Q9BBP4|CCSA_LOTJA Cytochrome c biogenesis protein CcsA; TrEMBL-Plants: tr|A0A0K0LNH5|A0A0K0LNH5_WISFL Cytochrome c biogenesis protein CcsA; Found in the gene: LotjaGi5g1v0223100 | 11 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| TRANSMEMBRANE | Phobius | 1 | 12.50 |