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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0141600 |
| Transcript ID | LotjaGi5g1v0141600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb-like transcription factor family protein; TAIR: AT5G06800.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q0WVU3|PHL5_ARATH Myb family transcription factor PHL5; TrEMBL-Plants: tr|V7BIH1|V7BIH1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0141600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:35108241..35112394) extracted from Lotus japonicus Gifu genome v1.2.
GCTCCTACTTAGGAGCGGGTATCTTCAACTCACTTCAAGATGTCACTGGCACTCTACGGTTATTAATATATTTTTTCTGC GTTCTATCATTTTTGTTACTAAAAAAGAAACATGAGGTCAAGTTCGATCATTTGAATGAGAAACATTTCGTAGTCATCCG TTTATCCTTATTGCTGACACCCCTTGTGATTGTGAGTGGTGGATAGATACTCTTGGGCTCAACATAAAAAATGAATACTT TGAGTATAGGTTTGGGGCAGTTTTTAACCTCTAATTGTGACTCATTCAAGCTAGGTAGGTTGCTTTAGCTGTCATCTTTC TACAGATTCTTTTGCGCTTCATTTAAATTCATAAGAAGACAACATTAGACAAAAAATTATTTGTTTGTTTATAAGGCTTT GTTTGTTTATATGGCTTTGTTGTTTTCAGTGTTGTGTGCTTCGGGTATTTCAATAGATCACAGTTCATTCATACCAATCC TATTTCAAGAATAATAACTAACCGGTGACCTTGTATGTATGGTAGCATTTAGACAAATTAGATTCAAATCTTATTCCTGA AGCCTTCAGGAATATCAGAGGGAACTTTATGCCAATTAGGCTCGAATTTAGCATCACTCTTCTGACATTTCCAATCTTCT CGCTTTCGGTTCTTGTTTACTTCTTCCATTTCTCAATTCCACATGGCGCTCCATAATAAGGATGAAACTTCATAGAGTTC TTATTATTTTTCGTGGCCAACGGTGAGTGGATTAGTCACTATTACTGTTGTCGGCGGTGGATACCCTAGTATAAAAAAAT GAACGAGAACAAGATTGATTTTGTGGGACGGATTCAACCAAGCCCTGGTGATTTCAATTCTGAGTTTGGCAATTATTTTT GCCAATATTTTGATGTGAGACAGGGTTTGAATATGGGGACTTGTGGTGGAGGAGTGGAACAACCACCATACATAGGCCAA GCTAGATCATCTAATAACACCATTATCAGTCGTTTTGAGTCACCAGCTTCTGCGTTTTATGCAACAGAAATCTACATGGG TTTCCCTCAATATGATTGCCAAATTGGTAATGGTAATGGTAGTGGTAATCCCTCTTTGATAACTCAATCTAAGACTCATG ATTTGGAATTCCCTTTGTATCAAAATCCCAAGGAAACCCTTTTCCTTGATTCACCAAACCAATCTGGCCCCAATTTTGAG TTGTCAAATCCTTTGCAATCTCAATTGAATAGTGATCAGTGTTGTGGATCTCCTGAAAATTCTAATAAAATCCCATGTGG GACTTTCCCTGGAGACAATTTTCTTCCAATTGAACAACACAAGTTGTTCATTGATGATGCTGTCTCAGTTTACAGGAGCC AATCCAATGTTTCTAAAGGAAACCAGGACAACAACATGGTTAGTGCTTTTGCAAACCCCATATTTGTTTTTTTTTCTTGC ATATTTTCCATTCATTGACTTGCTTATATTTGTTGTAATCTTTCTGTCCTGCAGGGTCCATATAATTTACCTCAAACACA GATCAAGTTCTCTTCTCATCCGCAAGACAAGTTGTCTCCAACACTCTCAGCAGGAAGTGTCTCAACTATAACTGGAAACC CTGCTTGTAGTGGACCTGCTGTTTCGAGCAAAACGCGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGCATGT GTGAATAGCCTTGGAGGTGCTGAGAGTAAGTAACTTACTGAGATTATCTATTGTGAAAAAAAAAATTCAGCCTCTGAGTC TTTTTTGATGCTTGATTGTAGAGGCAACACCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATCTTCCAT GTTAAGAGTCATTTGCAGAAATATAGGACTGCAAAATACATGCCAGAGGCAGCTCAAGGTAATTTCTAAATTAGTGAATG TTTGGATCAGCGTTGTCTAAAATTGATTTTGATAGAATTGATTTTGGTAAAATTGAGTATGATAAACGTGAGTTGAAAAT AAAGTGATTTATTTATGGTTACCTTCATGAGAGAAGTGAATTTTGTAGGATAATGTCGTGGAATTCAATTATAAAATCTC AGAATTGGTTATGTTCAATGCAAAAGCTACTCTCCCTAGCCTCCAGCTGAATTGATTTTACCTATCAAAATTGATTCTAT GGTTCGCAACGGAGAACCAAAGAGACACCTAGTTGCAATATTTTGGTTTGAATCACATGTATCATCCACTGAAGCAATCA TGTTCGAATTGGCTAGGACCACTATGGGCGGCGAAGTTCTAATTTCCAAGTATTTATCACGTGCATTCACAGGAACTCGA ACCTGAGACCTCTGCTTAAGCTAGAACAACACCTAAGTAGTGAATTTCATGTCAAGTACATTTCTTTAATCATAAATTTG ATAGCATTCAAATCCTAAGTGGTGAGCAAATGATTATGCTACTGTGCTTGGTAATGGGGTGAGATTATATACTAATCTGA TTTTTGTTATTATCAATGTCTTTAAACTTAGCCAAATCTAAAGGGGTAAAAGGAGGTTGCAAAACAATGAAAAAGGGATA CATTTATATCCTTTCATATGGTTGAAAGCTTAAATTACTAAATGATGAGTACAGTTTTGTTTCTCTGCTTGATGATAATG ATACATGCTACCAATTATAGGGTATGACTAAACGTTTTCCACTGCCTTATTACTCTCCAGTTATTCATAATCTTCAATAC CCTTATTCAAATCATTCACTTTCAAATTAGCAAGTGAACTTCTCAAACTGTGTCTTAACAAACTGTTATTGTGTTTCAGG GAAATCTGACAACAAAAGAACCCATGTAGAGAATGTGCATCTTGATGTCAAAACGTAACCTATTTTCCCTATGCCACTTT TTTTATTCCAATTCTAGTACTTCCATTTTTGGTTCTCTTATTGGCATCCGATTGTCTTATTCTATAATCAACTGTATTTG TTGTTATTGCTCTGCAGTGGCTTGCAAATCAGAGAAGCACTTCAGCTGCAGCTAGATGTTCAGCGGCACCTTCATGAACA GCTAGAGGTACATCCTTGCAATTCTTATCTCTTATCACTTTTTTGCTACAAATCCTTAGTGAATGCTTGGATACAAGTAA AAAAACCACAATGAAGTCAAAATCAGGGTGAGCAGAAGCAAAAGCTAACAAAAGTTGCTTTTGTCCACTATGATTTTAGC TCCTTGTGTTTCTACTGTGTATCCAAACATGCACTTAATACTTCATAGATGCATACTCTTTACAACGTTTCTGCATTCAT ATCTTCTTTTAATTTAATTTTTGGTTTCAGATTCAGAGAAAATTACAAATGCGGATTGAAGAACAAGGTAAGCAACTGAA GATGATGTTTGACCAACAGCAGAAGACAAGTAATAGCATCTTGAACACTCGTAATTTGAGCAATACAGACAATAATGATA AACCAATAAGTCCTAAAGATGTTGAGGTTTCCATTTCTGAAGGGTCTGAGAAATCCTTCTTCCACTCCAAGATCAGTTAG TTCTCAAAGCTCACAATTTGATGGGTCTATACATAAGGAATGAATTGCTGTAACACAGTCAAACCACACCATACAATTTT GTTATGGGCTTTAAAGCACTCTTATTACACTTCAAGTGGAAACTCAGTGAATAAGTACATATAAAATGAGTGTACTAGTT TTGCATTACTTGAAAAACACATCATTATTGGTTAATTGTAATTTTCATATAGAGGGCTTTTGTATCAGTTCAGGACATAT TACTGCCTTGCTTCCTCTGCATTCCTTCGTCTTCACGGCATATGCTATAATAGTACATTACGTCGAGGGGTTAAGATCTT TTGTTCTCGGGCTATGCTATTTTACACGACAACTTACAGCACTACTCACTGCACGACCCTTCAATAACCAATCAAAATCT CTGGTTTAGAATATAAAACAATTTGTGAAATAAAAGGCAGTTAAGAAAAACAAATAACACACTAGTAGTGCAATGTCGTG GGCTATGGGGTCGTGCAATAGAGCATTACCCTTTGTTCTCATTTGTTATCTTACCCTTTGTCGTGGGCTATGATAGTTTT TTTTTTTTTTTTGAAAGGTTGGATATGATAGTTATCAACTTACAATTTAGTAAATTTTAAATGATATAGCATAA
CDS sequence (LotjaGi5g1v0141600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGAGAACAAGATTGATTTTGTGGGACGGATTCAACCAAGCCCTGGTGATTTCAATTCTGAGTTTGGCAATTATTT TTGCCAATATTTTGATGTGAGACAGGGTTTGAATATGGGGACTTGTGGTGGAGGAGTGGAACAACCACCATACATAGGCC AAGCTAGATCATCTAATAACACCATTATCAGTCGTTTTGAGTCACCAGCTTCTGCGTTTTATGCAACAGAAATCTACATG GGTTTCCCTCAATATGATTGCCAAATTGGTAATGGTAATGGTAGTGGTAATCCCTCTTTGATAACTCAATCTAAGACTCA TGATTTGGAATTCCCTTTGTATCAAAATCCCAAGGAAACCCTTTTCCTTGATTCACCAAACCAATCTGGCCCCAATTTTG AGTTGTCAAATCCTTTGCAATCTCAATTGAATAGTGATCAGTGTTGTGGATCTCCTGAAAATTCTAATAAAATCCCATGT GGGACTTTCCCTGGAGACAATTTTCTTCCAATTGAACAACACAAGTTGTTCATTGATGATGCTGTCTCAGTTTACAGGAG CCAATCCAATGTTTCTAAAGGAAACCAGGACAACAACATGGGTCCATATAATTTACCTCAAACACAGATCAAGTTCTCTT CTCATCCGCAAGACAAGTTGTCTCCAACACTCTCAGCAGGAAGTGTCTCAACTATAACTGGAAACCCTGCTTGTAGTGGA CCTGCTGTTTCGAGCAAAACGCGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGCATGTGTGAATAGCCTTGG AGGTGCTGAGAAGGCAACACCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATCTTCCATGTTAAGAGTC ATTTGCAGAAATATAGGACTGCAAAATACATGCCAGAGGCAGCTCAAGGGAAATCTGACAACAAAAGAACCCATGTAGAG AATGTGCATCTTGATGTCAAAACTGGCTTGCAAATCAGAGAAGCACTTCAGCTGCAGCTAGATGTTCAGCGGCACCTTCA TGAACAGCTAGAGATTCAGAGAAAATTACAAATGCGGATTGAAGAACAAGGTAAGCAACTGAAGATGATGTTTGACCAAC AGCAGAAGACAAGTAATAGCATCTTGAACACTCGTAATTTGAGCAATACAGACAATAATGATAAACCAATAAGTCCTAAA GATGTTGAGGTTTCCATTTCTGAAGGGTCTGAGAAATCCTTCTTCCACTCCAAGATCAGTTAG
Protein sequence (LotjaGi5g1v0141600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNENKIDFVGRIQPSPGDFNSEFGNYFCQYFDVRQGLNMGTCGGGVEQPPYIGQARSSNNTIISRFESPASAFYATEIYM GFPQYDCQIGNGNGSGNPSLITQSKTHDLEFPLYQNPKETLFLDSPNQSGPNFELSNPLQSQLNSDQCCGSPENSNKIPC GTFPGDNFLPIEQHKLFIDDAVSVYRSQSNVSKGNQDNNMGPYNLPQTQIKFSSHPQDKLSPTLSAGSVSTITGNPACSG PAVSSKTRIRWTQDLHEKFVACVNSLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRTAKYMPEAAQGKSDNKRTHVE NVHLDVKTGLQIREALQLQLDVQRHLHEQLEIQRKLQMRIEEQGKQLKMMFDQQQKTSNSILNTRNLSNTDNNDKPISPK DVEVSISEGSEKSFFHSKIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 420 | 380 | 3.7E-149 | – | |
| PANTHER | 41 | 420 | 380 | 3.7E-149 | – | |
| Gene3D | 243 | 303 | 61 | 3.2E-26 | – | |
| SUPERFAMILY | 244 | 300 | 57 | 5.02E-16 | ||
| TIGRFAM | 246 | 301 | 56 | 7.6E-23 | ||
| Pfam | 250 | 299 | 50 | 2.2E-5 | ||
| Pfam | 330 | 377 | 48 | 6.1E-20 | ||
| Coils | 333 | 353 | 21 | - | – | |
| MobiDBLite | 373 | 420 | 48 | - | – | |
| MobiDBLite | 373 | 395 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0141600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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