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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0146300 |
| Transcript ID | LotjaGi5g1v0146300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT3G13770.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial; TrEMBL-Plants: tr|K7K942|K7K942_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0146300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:37132714..37135983) extracted from Lotus japonicus Gifu genome v1.2.
AAAATATAAACATATGAGATACAGTGGGGTCCAACTAAAAGTAAAATAAACAGTCATGCACTGGAGTGAATTCTGCATGA GTTGCTTATGAGTTGCTTAAATCCTATGTGGCAGTCTGGGCCCACCAGAATAGCATTTAAGCGACCCAAGTAAAGCATTG GAGATGCTCTAATGTGCCTTGTTCGGACGGTTGTCACCTTTCCATGCAAGTTTGAATTGAAACCTTCTACCTCGTCAATC GTCATCTTCCACACTAACTATTCCCTACGCATGCTTCGCGCAAGACATGTCCATATCCATGTCTCACCTTCCACACACAA GAACTTCATCCAACAACTACCTCTACTATCGTTCCTTTCATACTCTCGACTCCTTCTCAGCACTCTCAGTTTCTCCCCTC ATCTTCAACAACCACTTCTACAAATGGCCCTTTGCGGCCACGACATGAAGTTCAAAGGCTACAACGCACTCTTGAACGAG TGCGTGAGCAAGAGGGCCTTAAGAGAAGGCCAGAGAGTCCATGCCCACATGATCAAAACTCGTTATCTTCCTTCTGTGTT CCTCAGGACGAGGTTGATCGTGTTGTATACGAAATGTGACTCTTTAAGAGATGCTCGGCACGTGTTCGATGAAATGCCTG AACGGAATGTGGTGTCGTGGACGGCTATGATTTCAGCTTATTCTCAGAGAGGGTATGCCTCTCAAGCCTTGAATCTTTTT GTCCAGATGTTAAGATCAGGTATTCTTGGTTTGCACGAGCTCATGAGAGTGGGTATACCTTTTTCATAATGCAATTTGAA TGCTTGATTTTGTTTTTTAAGTATTGGTTATACGTGGGAGGGGATGTAAGGTTACTTGTTACGCCCAAGTTGATAATTTA GACTTTTTTAGTATGTATAATAATGGTGAAGATTGAAAATGTAATCTCATGTGAACTATCTAAACTCCCATTACTGGCAC AATCCTAGTGGCTTGACAATTTAGAATTCAAATGTTAAGATTCTTGATTACCAATAACTAATGTTGATAGAATCTTCATT GAATTTGAAGAACCTATCGAGCCTGTAATAATCATGTTGTGAGGAGAAACTAAAAGATGCAGATTGTATTTTCTTTTCTG AATGTATTGGCTTCAGGATTTCTATTTTGATATTTTTGGGTTCCTTTTGAGTTTTGTCCCACTGGTTTCTGTGTGCTGAT GATATGTATGCCTTTCTGCAGGGACAGAACCTAATGAGTTCACTTTTGCTACAGTGCTTACGTCATGTACAAGTTCTCTG GATTCCATGCTAGGGAGGCAAATCCACTCTCTTATCATAAAATCAAATTATGATGCCCATGTTTATGTAGGAAGCTCACT CCTTGACATGTATGCCAAAGATGGTAAAATTCATGAAGCTCGAGGCATTTTTGAATGTTTGCCAGAAAGAGATGTTGTTT CCTGTACTGCTATAATCTCTGGATATGCTCAACTGGGTCTGGATGAAGAGGCATTGGATCTTTTTCGCCAGTTGCGAGGA GAAGGAATGCAATCAAATTATGTTACTTATGCTAGTGTTTTAACTGCCCTTTCTGGGCTTGCTTCTCTAGATCATGGCAA GCAAGTGCACAACCATGTTCTTCGCTCTGAAGTTCCCTCATATGTAGTTCTTCAAAACTCTTTGATTGACATGTACTCAA AATGTGGAAACCTCACTTACTCAAGAAGGATATTTGATACCATGCAGGAGAGAACTGTTATGTCTTGGAATGCAATGCTG GTCGGGTATGGAAAACATGGAGAGGGAAGAGAAGTGCTTGAGCTGTTTACTTTAATGAGAGAAGAAAACGAAGTAAAACC TGACGGTGTCACAATGTTGGCTGTGTTATCTGGCTGCAGTCATGGAGGATTGGAAGACAGAGGACTTGATATTTTTTACG ATATGACCAGTGGAAAAATTGGAGTTGAGCCAAAGAAGGAGCACTATGGGTGTGTTGTTGATTTGCTTGGCCGTGCCGGT CGAGTAGAAGAAGCGTTTGAATTCATAAAAAAGATGCCTTTTGAACCAACAGCTGCAATATGGGGTTCCCTTTTAGGTGC TTGTAGTGTTCATTCAAATGTTGACATTGGTGTATTTGTGGGTCATCGGCTTCTAGAAATTGAGCCTGGAAATGCTGGAA ATTATGTTATTCTGTCTAACTTATATGCTTCAGCAGGAAGATGGGAAGATGTAAGATCACTAAGGGACATGATGTTGAAG AAGGCAGTGATGAAAGAGCCTGGAAGAAGCAGGATTGAGCTTGATCAAGTACTTCATACTTTCCATGCTAGTGATCGTTC TCATCCAAGAAGAGAAGAGGTCTATATTAAAGTGAAGGAATTATCAGTTAGATTTAAAGAAGCTGGTTATGTTCCTGATT TGAGTTGTGTTTTACACGATGTGGATGAGGAGCAGAAGGAGAAGATACTTCTCGGCCATAGTGAAAAGTTGGCCTTGTCT TTTGGACTAATTTCTACTCCAGAAGGTGTGCCAATCCGTGTCATTAAAAATCTCCGTATTTGTGTTGACTGCCATAATTT TGCTAAATATATCTCAAAGATTTATGGTAGAGAAGTGTCTTTGAGAGATAAAAACCGGTTTCATCAAATTGTTGGAGGAA AATGTTCCTGTGGAGATTACTGGTGAGAAGATTTTGATAGATAGCACTTAATTAACATCTAAGGCGCATGAAAAAAAGGC TCTTGATCTTCGGTCTTTGATTTGTGTTAGGACTGAAATTTGGCTTGCAATTAAGTAGTAGTGTAGTATGAAATTCCTCC AAGAAAAATGGACACAGAGAAATTAATGAACAAGGAAGTGTCAACTGACCAATAGTGCAATGTAATTTGAGAGGATCCAA AACAGCATGTATTAAAATGCTTCACAATGCTCCTTTGTCTTCTCTGCTGTGGATTTTCATGTTATTCTCTTCACAATGCT CATGGCTTCACAGCCTGTAGCTCTTTCATCTCTGCCAGGGCTTCGCCTATTGTTCTCTTTTGCTCTTGGGGAACTCATCT AAGATGTACTCTAGGTATTCATATATATTCTCGAGTTTGTCCATTTTGATCTTTGATTTTCTTAATGTGTTACATTTGAA AGCTTCCTCGGTAAGCGATGTTGTGATAGCGAAGACTTGGGTTCTTTTATTGAATGTTCTACATAGGATTTTTTGTCACG AGTATATTGTCAATGAAGTTGTTGAACTTGAAATGTTGCTTATTTTGCTGCTTTTTGTCATAAATTAGAG
CDS sequence (LotjaGi5g1v0146300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAGGGAGGCAAATCCACTCTCTTATCATAAAATCAAATTATGATGCCCATGTTTATGTAGGAAGCTCACTCCTTGA CATGTATGCCAAAGATGGTAAAATTCATGAAGCTCGAGGCATTTTTGAATGTTTGCCAGAAAGAGATGTTGTTTCCTGTA CTGCTATAATCTCTGGATATGCTCAACTGGGTCTGGATGAAGAGGCATTGGATCTTTTTCGCCAGTTGCGAGGAGAAGGA ATGCAATCAAATTATGTTACTTATGCTAGTGTTTTAACTGCCCTTTCTGGGCTTGCTTCTCTAGATCATGGCAAGCAAGT GCACAACCATGTTCTTCGCTCTGAAGTTCCCTCATATGTAGTTCTTCAAAACTCTTTGATTGACATGTACTCAAAATGTG GAAACCTCACTTACTCAAGAAGGATATTTGATACCATGCAGGAGAGAACTGTTATGTCTTGGAATGCAATGCTGGTCGGG TATGGAAAACATGGAGAGGGAAGAGAAGTGCTTGAGCTGTTTACTTTAATGAGAGAAGAAAACGAAGTAAAACCTGACGG TGTCACAATGTTGGCTGTGTTATCTGGCTGCAGTCATGGAGGATTGGAAGACAGAGGACTTGATATTTTTTACGATATGA CCAGTGGAAAAATTGGAGTTGAGCCAAAGAAGGAGCACTATGGGTGTGTTGTTGATTTGCTTGGCCGTGCCGGTCGAGTA GAAGAAGCGTTTGAATTCATAAAAAAGATGCCTTTTGAACCAACAGCTGCAATATGGGGTTCCCTTTTAGGTGCTTGTAG TGTTCATTCAAATGTTGACATTGGTGTATTTGTGGGTCATCGGCTTCTAGAAATTGAGCCTGGAAATGCTGGAAATTATG TTATTCTGTCTAACTTATATGCTTCAGCAGGAAGATGGGAAGATGTAAGATCACTAAGGGACATGATGTTGAAGAAGGCA GTGATGAAAGAGCCTGGAAGAAGCAGGATTGAGCTTGATCAAGTACTTCATACTTTCCATGCTAGTGATCGTTCTCATCC AAGAAGAGAAGAGGTCTATATTAAAGTGAAGGAATTATCAGTTAGATTTAAAGAAGCTGGTTATGTTCCTGATTTGAGTT GTGTTTTACACGATGTGGATGAGGAGCAGAAGGAGAAGATACTTCTCGGCCATAGTGAAAAGTTGGCCTTGTCTTTTGGA CTAATTTCTACTCCAGAAGGTGTGCCAATCCGTGTCATTAAAAATCTCCGTATTTGTGTTGACTGCCATAATTTTGCTAA ATATATCTCAAAGATTTATGGTAGAGAAGTGTCTTTGAGAGATAAAAACCGGTTTCATCAAATTGTTGGAGGAAAATGTT CCTGTGGAGATTACTGGTGA
Protein sequence (LotjaGi5g1v0146300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGRQIHSLIIKSNYDAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSCTAIISGYAQLGLDEEALDLFRQLRGEG MQSNYVTYASVLTALSGLASLDHGKQVHNHVLRSEVPSYVVLQNSLIDMYSKCGNLTYSRRIFDTMQERTVMSWNAMLVG YGKHGEGREVLELFTLMREENEVKPDGVTMLAVLSGCSHGGLEDRGLDIFYDMTSGKIGVEPKKEHYGCVVDLLGRAGRV EEAFEFIKKMPFEPTAAIWGSLLGACSVHSNVDIGVFVGHRLLEIEPGNAGNYVILSNLYASAGRWEDVRSLRDMMLKKA VMKEPGRSRIELDQVLHTFHASDRSHPRREEVYIKVKELSVRFKEAGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFG LISTPEGVPIRVIKNLRICVDCHNFAKYISKIYGREVSLRDKNRFHQIVGGKCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 99 | 98 | 2.3E-18 | ||
| PANTHER | 3 | 107 | 105 | 3.8E-82 | – | |
| ProSiteProfiles | 18 | 48 | 31 | 6.84 | ||
| Pfam | 49 | 95 | 47 | 1.5E-7 | ||
| ProSiteProfiles | 49 | 83 | 35 | 10.665 | ||
| TIGRFAM | 51 | 82 | 32 | 7.6E-5 | ||
| ProSiteProfiles | 84 | 118 | 35 | 6.763 | ||
| Gene3D | 100 | 201 | 102 | 6.8E-18 | ||
| PANTHER | 101 | 322 | 222 | 3.8E-82 | – | |
| ProSiteProfiles | 119 | 149 | 31 | 7.476 | ||
| Pfam | 124 | 149 | 26 | 0.012 | ||
| ProSiteProfiles | 150 | 184 | 35 | 9.514 | ||
| Pfam | 150 | 198 | 49 | 3.0E-7 | ||
| TIGRFAM | 153 | 186 | 34 | 2.3E-6 | ||
| ProSiteProfiles | 186 | 220 | 35 | 6.873 | ||
| Gene3D | 203 | 392 | 190 | 1.0E-15 | ||
| ProSiteProfiles | 223 | 257 | 35 | 7.454 | ||
| Pfam | 226 | 250 | 25 | 0.0027 | ||
| TIGRFAM | 227 | 250 | 24 | 0.0013 | ||
| ProSiteProfiles | 289 | 323 | 35 | 7.717 | ||
| Pfam | 293 | 319 | 27 | 0.39 | ||
| Pfam | 325 | 447 | 123 | 9.6E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0146300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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