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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0146500 |
| Transcript ID | LotjaGi5g1v0146500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G18750.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic; TrEMBL-Plants: tr|A0A0L9TUF7|A0A0L9TUF7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0146500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:37142736..37145363) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAATTGAGCGTAACAAGTAACAAAGCACACACTCAACCAGCACTGACCAAGCGTGAACTTGACAATAATCATACATA TTCCATTGACAAAATCATTCAAAATTCTCATATTTCGTCGTCATCATCATGTTCTTCAACGTTTTCATCTTCTTTTCCCA CATTGCCTTCTTCACACCCATCACTTGAAACATCCACTTCACAATGTCCCTGCTCTGCTTAATTCATGTCATGATAGTGC CCTTGGATTGTTCAGATCAACGATGGAGGAGGAGCCCAACAACACAATGGCGTGGAACTTGACCATCAGGACCCATGTTG ATTTGGGACAGTTCCATTCAGCTTTGTCAACGTTCAAAAAAATGAGACAAATGGGTGTTCCCCATGATACTTTTACTTTT CCAGTAGTGAACCGAGCTTTATCATCCATGAGGGCTGATGCTGTGTATGGAAAGATGACCCATTGTGTAGCAATTCAAAT GGGTTTGGATTTGGATTTATATTTTTGTAACACAATGATTGATTTTTATGTGAAATGTTGGTGCATTGGTTGTGCTCGCC GCGTGTTTGATCTAATGCTGCACAGAGATGTGGTTTCCTGGACGTCGATGATTGCTGGATATATTTCTGAGAGACATGTT AGTGTGGCTTGTGATTTGTTCAACAAGATGAGGGTGGAATTGGAACCAAATTCAGTTACTCTTATTGTAATGTTGCAGGC ATGTTGTGCTTCCACGCCATTAAATGTGGGAACTCAAATTCATGGGTATGCAGTGAAGAGTGGAGTGCTAATGGATTGGT CGGTGAAAAATTCAGTTTTGAGAATGTATGCTGATAAAGGGAGTACTGAAGAAGTGGAACTTTTATTTAGTGAAATCAAC AAAAGGGATGTGGCTTCCTGGAATATTTTGATTTCCTTTTATTCCATGGTAGGAGACATGATGAGAGTGGCTGGTTTGGT CAATGAAATGCAGAGCCTAGAAGGGCATTCATGGAACATTGAGACTTTAACACTAGTTATATCAGCATTTGCAAAGTGTG GTAATCTTTCTAAGGGTGAAGGCGTGCATTGCTTAGTCATAAAAACAGGTTTTTCTGATGATGTTTTGCAAACTTCTCTG CTTGACTTTTATGCCAAATGTGGGAAATTGGACATATCAGTTCAACTATTTAGAGAGATTCATTTTAAAAGTTACATCAC TTTGGGTGCTATGATGTCAGGTTTCATTCAAAATGGTTCTTTTATGGAGGCCATAGCTTTGTTCCAGCAAATGCAAGCTG AAGATCTTGTTATTGTCCCTGAGATTTGGAGAAATCTACTTGATGCATGTGCAAACCTGGGAGCTTTGAAGTTGGGAAGA GTTGTCCATGGTTATCTTATGAAGAACTTGTTTAATGGACCTGTTGAGGGTAATCTGCACATGGAAACCTCTATCTTAAA CATGTACATTAGAGGTGGTAATATATCTTCAGCTAGAGCAGTTTTTGACAGGATGCCTGTCAAAGATGTTATAGCATGGA CATCAATGATTGAGGGATTTGGATCCCATGGTTTTGGTTTTGAAGCCCTTAAGTATTTTAATTTAATGATGGAGCATAGA ATGCAGCCGAACTCCGTTACCTTCTTGAGCTTATTATCTGCTTGCAGCCACTCTGGCCTTGTCAGTGAAGGCTGCAAAAT TTACTATTCTATGAAATGGGGTTTTGGTATTGAACCAGCTTTGGATCACCATACTTGCATGGTGGATCTTTTCGGTCGAT GTGGGATGGTTAAAGAGGCCTTATCCATAATATTGAAAATGGTAATTTTACCAGATAGCAGGATTTGGGGTGCTCTTCTA GCAGCTTCAGGAGTTTATGGAAATAAAACATTGGGAGAATATACAGCACAAAGACTGTTGGAACTTGAACCTGATAATGC TGGATACCATACGTTGTTGAGTAATGTAAAAGCAAGTGCCGGAAGGTGGAATGAGGTTGAAGAATTAAGGAGAGAGATGA GTGAAAAAGATCTCAAGAAGAAACCAGGGTGGAGCTGCATTGAGGTAAAAGGGGTCAGTTACGGATTTCTTTCTGGAGAT ATAACACACCCTGAAGCAGAAGAGATTTATGCGGCATTGTGTACATTGAGTCGAGTGACACAGGATTTTGGGTAAGATAT TTAAAGCGGTTCAAAAGGGTATTGAAAATATGTCTTGGCTAATATCAGCTACTTCAAACCAATGCTTGGCAAAGCACTGT CTAACCTAATCCCAAGTTCTTCAGTGAAGAAAATGGGCTAATTTGTGATTTTATATCGGCTCCGTAAAGGGAAGAAAATG AATGTGTAGAATGATTATTGCACTGAGTTTAGGATTAATAATTTGTTGCAGGAAATCATATATGATTTCTTCATTTGAGA ACCAGTCTGCCCTCGTAAGCACTCAAACAAATGTCGAGTTCTGGTTAAGTACTTTTGACATGTTTAAATTACGATTATAT ACAACCAAGGTGTAGGTGATGTTTGATCCGTCAAGATGATATAATAATTCCAGCGACTATCCCAACCATTTTAGGACAAA TTCTTGTTTTTCTCAGGACTCTTGCTTAGTTCATTCGTAGACTATATAATAGTTCATTTTAGTGCTGC
CDS sequence (LotjaGi5g1v0146500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGGAGCCCAACAACACAATGGCGTGGAACTTGACCATCAGGACCCATGTTGATTTGGGACAGTTCCATTCAGC TTTGTCAACGTTCAAAAAAATGAGACAAATGGGTGTTCCCCATGATACTTTTACTTTTCCAGTAGTGAACCGAGCTTTAT CATCCATGAGGGCTGATGCTGTGTATGGAAAGATGACCCATTGTGTAGCAATTCAAATGGGTTTGGATTTGGATTTATAT TTTTGTAACACAATGATTGATTTTTATGTGAAATGTTGGTGCATTGGTTGTGCTCGCCGCGTGTTTGATCTAATGCTGCA CAGAGATGTGGTTTCCTGGACGTCGATGATTGCTGGATATATTTCTGAGAGACATGTTAGTGTGGCTTGTGATTTGTTCA ACAAGATGAGGGTGGAATTGGAACCAAATTCAGTTACTCTTATTGTAATGTTGCAGGCATGTTGTGCTTCCACGCCATTA AATGTGGGAACTCAAATTCATGGGTATGCAGTGAAGAGTGGAGTGCTAATGGATTGGTCGGTGAAAAATTCAGTTTTGAG AATGTATGCTGATAAAGGGAGTACTGAAGAAGTGGAACTTTTATTTAGTGAAATCAACAAAAGGGATGTGGCTTCCTGGA ATATTTTGATTTCCTTTTATTCCATGGTAGGAGACATGATGAGAGTGGCTGGTTTGGTCAATGAAATGCAGAGCCTAGAA GGGCATTCATGGAACATTGAGACTTTAACACTAGTTATATCAGCATTTGCAAAGTGTGGTAATCTTTCTAAGGGTGAAGG CGTGCATTGCTTAGTCATAAAAACAGGTTTTTCTGATGATGTTTTGCAAACTTCTCTGCTTGACTTTTATGCCAAATGTG GGAAATTGGACATATCAGTTCAACTATTTAGAGAGATTCATTTTAAAAGTTACATCACTTTGGGTGCTATGATGTCAGGT TTCATTCAAAATGGTTCTTTTATGGAGGCCATAGCTTTGTTCCAGCAAATGCAAGCTGAAGATCTTGTTATTGTCCCTGA GATTTGGAGAAATCTACTTGATGCATGTGCAAACCTGGGAGCTTTGAAGTTGGGAAGAGTTGTCCATGGTTATCTTATGA AGAACTTGTTTAATGGACCTGTTGAGGGTAATCTGCACATGGAAACCTCTATCTTAAACATGTACATTAGAGGTGGTAAT ATATCTTCAGCTAGAGCAGTTTTTGACAGGATGCCTGTCAAAGATGTTATAGCATGGACATCAATGATTGAGGGATTTGG ATCCCATGGTTTTGGTTTTGAAGCCCTTAAGTATTTTAATTTAATGATGGAGCATAGAATGCAGCCGAACTCCGTTACCT TCTTGAGCTTATTATCTGCTTGCAGCCACTCTGGCCTTGTCAGTGAAGGCTGCAAAATTTACTATTCTATGAAATGGGGT TTTGGTATTGAACCAGCTTTGGATCACCATACTTGCATGGTGGATCTTTTCGGTCGATGTGGGATGGTTAAAGAGGCCTT ATCCATAATATTGAAAATGGTAATTTTACCAGATAGCAGGATTTGGGGTGCTCTTCTAGCAGCTTCAGGAGTTTATGGAA ATAAAACATTGGGAGAATATACAGCACAAAGACTGTTGGAACTTGAACCTGATAATGCTGGATACCATACGTTGTTGAGT AATGTAAAAGCAAGTGCCGGAAGGTGGAATGAGGTTGAAGAATTAAGGAGAGAGATGAGTGAAAAAGATCTCAAGAAGAA ACCAGGGTGGAGCTGCATTGAGGTAAAAGGGGTCAGTTACGGATTTCTTTCTGGAGATATAACACACCCTGAAGCAGAAG AGATTTATGCGGCATTGTGTACATTGAGTCGAGTGACACAGGATTTTGGGTAA
Protein sequence (LotjaGi5g1v0146500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEPNNTMAWNLTIRTHVDLGQFHSALSTFKKMRQMGVPHDTFTFPVVNRALSSMRADAVYGKMTHCVAIQMGLDLDLY FCNTMIDFYVKCWCIGCARRVFDLMLHRDVVSWTSMIAGYISERHVSVACDLFNKMRVELEPNSVTLIVMLQACCASTPL NVGTQIHGYAVKSGVLMDWSVKNSVLRMYADKGSTEEVELLFSEINKRDVASWNILISFYSMVGDMMRVAGLVNEMQSLE GHSWNIETLTLVISAFAKCGNLSKGEGVHCLVIKTGFSDDVLQTSLLDFYAKCGKLDISVQLFREIHFKSYITLGAMMSG FIQNGSFMEAIALFQQMQAEDLVIVPEIWRNLLDACANLGALKLGRVVHGYLMKNLFNGPVEGNLHMETSILNMYIRGGN ISSARAVFDRMPVKDVIAWTSMIEGFGSHGFGFEALKYFNLMMEHRMQPNSVTFLSLLSACSHSGLVSEGCKIYYSMKWG FGIEPALDHHTCMVDLFGRCGMVKEALSIILKMVILPDSRIWGALLAASGVYGNKTLGEYTAQRLLELEPDNAGYHTLLS NVKASAGRWNEVEELRREMSEKDLKKKPGWSCIEVKGVSYGFLSGDITHPEAEEIYAALCTLSRVTQDFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 59 | 59 | 3.5E-5 | ||
| SUPERFAMILY | 2 | 573 | 572 | 9.34E-5 | ||
| ProSiteProfiles | 7 | 41 | 35 | 9.175 | ||
| Pfam | 10 | 39 | 30 | 0.091 | ||
| PANTHER | 11 | 159 | 149 | 8.6E-99 | – | |
| Gene3D | 60 | 161 | 102 | 2.2E-18 | ||
| ProSiteProfiles | 78 | 108 | 31 | 6.665 | ||
| Pfam | 109 | 155 | 47 | 6.0E-11 | ||
| ProSiteProfiles | 109 | 139 | 31 | 8.561 | ||
| TIGRFAM | 111 | 137 | 27 | 1.8E-4 | ||
| ProSiteProfiles | 143 | 177 | 35 | 5.952 | ||
| PANTHER | 160 | 265 | 106 | 8.6E-99 | – | |
| Gene3D | 162 | 275 | 114 | 2.2E-13 | ||
| ProSiteProfiles | 178 | 212 | 35 | 7.53 | ||
| Pfam | 183 | 209 | 27 | 0.68 | ||
| Pfam | 212 | 238 | 27 | 0.029 | ||
| ProSiteProfiles | 245 | 279 | 35 | 7.794 | ||
| Pfam | 248 | 274 | 27 | 0.67 | ||
| PANTHER | 248 | 365 | 118 | 8.6E-99 | – | |
| Gene3D | 276 | 375 | 100 | 3.1E-13 | ||
| Pfam | 284 | 306 | 23 | 0.69 | ||
| ProSiteProfiles | 310 | 344 | 35 | 8.912 | ||
| TIGRFAM | 313 | 343 | 31 | 3.9E-5 | ||
| Pfam | 313 | 340 | 28 | 6.2E-4 | ||
| PANTHER | 349 | 584 | 236 | 8.6E-99 | – | |
| Gene3D | 376 | 476 | 101 | 2.7E-20 | ||
| ProSiteProfiles | 384 | 414 | 31 | 7.037 | ||
| Pfam | 414 | 462 | 49 | 2.7E-8 | ||
| ProSiteProfiles | 415 | 449 | 35 | 10.106 | ||
| TIGRFAM | 418 | 450 | 33 | 7.3E-6 | ||
| ProSiteProfiles | 450 | 485 | 36 | 8.068 | ||
| Gene3D | 477 | 598 | 122 | 3.8E-10 | ||
| ProSiteProfiles | 486 | 516 | 31 | 5.93 | ||
| Pfam | 491 | 514 | 24 | 0.013 | ||
| ProSiteProfiles | 551 | 586 | 36 | 7.772 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0146500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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