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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0154400 |
| Transcript ID | LotjaGi5g1v0154400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein 7A; TAIR: AT4G28600.1 no pollen germination related 2; Swiss-Prot: sp|Q66GN3|NPGR2_ARATH Protein NPGR2; TrEMBL-Plants: tr|I1L8G5|I1L8G5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0154400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40107055..40111868) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTGGCTACGCGCAGGAGGGGAAACATTGGGAGGAGCAGATGAAGTTTTCCCTTCATCTGAATCTATTGTAACCAA GGATTTTTCCATCAGTGGGCCATCGGGCCTTGCCGGACAAGTTGATAAGAAGCCGGATACGGGGAATATAGAAGAAGCTG AATCATCTTTACGTGAGAGTGGCGTCTTGAACTATGAGGTTGGTTTAATCATAGTTCCCTTGCCTTCGATGTTTTCTGTT ATACCGAACAATCGGATATGGTTTATTCTTTGTTATTTGCTCTAGACCATAGTGTGTTCATATACTTTTCTTTACCCAAC ATGTAACTTCAGGCTTGTTACATGGTTTCTTTATGGTAGGTTTATTAATAGTTGTATGGACTACTTTTAGATCTTTCCAG GGTTTTAAATTGCGGTTGCGACTGCGTAGCGGAATTGCGGACAAATGCGGGTTGATCCGTCCACAATTGCAATCGCGATC ATGACGGGGTAACTCTAAAACCCGTTACGTTGAGGCCGCAATTGCGGTTGCTGATCGCAATTTAAAAACCTGGATCTTTC TGTCTATGCCCTTAGTTTTGGAAAGTCAGCATCTATCTTTTGTTGTTTCAGAATCCTTAATCTGATCTTCCGATGTATCA AAAAAGAATCCTTAATCTGAAAAATAGTTGACCAAGGCATTGGTTTCCGTAATTCTATCTGACCACAGTTAATGCATATA TTTTTCTAATGATCTACTTATTGAATTTGATGTTTCCTTTTTTTTTATTAGCAAATTTGATACTTCGCATTCAATACGAT TTTTTTTTGGCATAATTCAACTTAAGTTAGTAAAGTATTTAACTCTTTCTGTGTGTGTTCCTCGTTTTAAATTCGTGATT ATGACTACGATTCTTTTTTAAAGAAAAATATGTCTGCAATTCACAGGAAGCTAGAGCTCTGCTGGGAAGATATGAATATC AGAAAGGAAATTTAGTAGCCGCCTTGCATGTCTTTGAGGGAATAGATATAAGTGCCGTGACTCCTAAGATCAAACTTGCC CTTTCTAGAAACAGAGAACACCAGAAGAGACGTTCCCAGAATCACGATGAGCCGCAAATGTCTATACATGCTGTTGGCTT GCTGTTGGAAGCAGTCTTCCTAAAAGCAAAATCTCTGCATGTTCTTGGAAGGTTTAAAGGTAACCTCACTGGTTGTTTGA TTCATAGATTTTCTCTTTGTTTTTCACTGCATATTTTCTTTTCAATCAGCACTATGGTACATATTTTACAAGTGGTATAC TTTATTTTTCAGTGATTAATATCTTGTAAATATACTTGATTTCAACTGCTATGAGTCTTTTTTAAATTATGAGCCTGTTT GGCAAGCAGAATCAATTCCATAGAATCATTTCTATTTGGTTAAAATCAATTCTAACCATTTAAAATAATGTTTGGGTGTA CCCGTACAATTGATTTCATGGGTTAAGAATTGGATCCACTTGCCATAACAAATAGTTGCTTTTGCATTGAACATAATAAA TTTGTTTTAATGGTCAAGCCAAAAGAGGATGATGCAGCTGCATTGTCAGTCATCTGCTATGCATGCGAAGTCCTCCGGAA TTGGTTTCGATGACAATGGGATACAAGTAGTGTAATCTGATGTATTTTTCCAATCATTCTTGCAGAAGCTGCCGTATCTT GCAAAGTTATTCTGGACATAGTGGAGTCTTCATTGCCCGAAGGCTTGCCTGATAATTTTGGTGCTGAATGTAAATTGCAG GAGACCTTGAGCAAGGCAGTTGAGCTGCTTCCCGAGTTATGGAAACTTGCTGATTGTCCGCGCGAAGCAACTTTATCTTA CCGGCGAGCGCTCCTTCATCATTGGAATCTTGATGCAGAGACTATAGCGAAGATTCAGAAAGAATTCGTTGTTTTTCTTC TATACAGCGGAGGGGAAGCAGCACCCCCTGATCTCCGTTCCCAAATGGACGGCTCATTTGTGCCGCTAAACAACATAGAA GAGGCTATTCTTCTTTTAATGATTTTGCTAAGAAAAGTCTCTCTCAATAGAATTGAGTGGGATCCTTCAATTTTGGACCA CCTTTCATTCGCTCTTTCTGTTTCAGGGGATTTGACATCTTTAGCTAATCAATTGGAAGAATTGCTCCCTGGGACTATCG ATAAAAGAGAAAGGTACCATGCTCTTGCTCTCTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGGATCTTCTCAGA AAATTATCGAGTAATAGAAAGGAACCAAAACATGTTCCAGGTTTGTTATTGGCTTCTAAGATTTGTTCTGAGAATCCCAG TCTAGCCGAAGAAGGAGTAAGATTTGCTCAAGGAGTTCTTGAGAGTTTAGATGGCAGGTGTAATCAGTTAAAAAATCTCG TTGAATTTTTTCAAGGTGTTTCATTGTCAGCAACCTCGAAATTGCCTGTTTCTGATTCTGAGAGGCTTAAGAGACAATCT GAGGCGCTTCATGCCTTGGAAAATGCTGCCAGAACGAGTAAAATGAGAGATCCCCTTGTGCTATATCATCTCAGTTTAGA ATATGCAGATCAAAGGAAGTTGGACTCGGCACTTCATTATGCAAAGTGCCTTTTAAAACTGGAAGGTGGTGCTAATGTTA AAGGGTGGTTATTGTTAGCTCGGATATTATCCGCTGAAAAACGGTTTGTGGATGCTGAATCTATTATCAATGCTGCGTTG GATCAGACTGGGAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAG TGCCATTGAGACATATACCCAGCTTCTTGCTGTCCTTCAAATCCAGAGTAAAAGTTCTGGTTCCTGGAAGAAGTTATCTA AGGTTTGTTTATAAGAAATTAAATTGAACATTGTTGAATTGTAGAGCGTTGCTCTTGTGACTTGGATGGATGTAGTCTCC CACAAACTTGTGGAATTTTTATGCTTTCTGCAGAAATTAATGACCATAGGTTTGTACTTATGAACAAAAGGAAGTGTGCT GCTGGTCCGTGTCTGAGAAATTGAGAATATTTATACAATGTTAGGAACAAAAATAGTGAGAGTACTAAAACATGATCATC ATTTTATTTGTTTCACATGCAGGCATTTCATGAAAAAAAATAAAAGCAGAATAAACAAGAGTTCCTCTAAATTTTGGTGT GCTTTTTTAAGTGTGGTTCTGGGTTCATGATGTTGAGAGTCAGTATCCATTATTAAGAGTGTCATTAGTTCAAAATTTTC TTTCTATTGAATCTCTGTTCCTCTTCTAGAAAAGTCTGCATGTTAGCGCCTGAAAGTATTTATTCCATAGCAAGTATGAG GATGTATAAATGATTAAATCTCTGTGCACTTATTAGAATTGGTATGTATCAGTTATTTACACCATACATTCTTTTCTATG TCCTTCAAGGAACCAGGTATAATGATTTGTTGAGCATTCTTAATCCATCATATAGTTTTTTCCTTTATGGTCCTCTGCTG ATCTGCCATACTATTTGGTGAAAGAATGTGCTCACTTCATCATTAGGATCTATTAGGAGGTTTTTTTCTTTCTCATTTTA AAAAGCTTTGTTGGTTGTACCTGTAAGATGCTTATTTTGAATGTGGACTAGTGTTGTCACATAGCGGATATCCCGGCGCT ATAGCCCTATAGCGTAACACTCTGAGGGCTCACCTTTATCCACTATTTTCTGCTCCGTGGGCTTTGACATAGCTGTTTTT TTGTTTACCGCTATTTTCTGCGATCTGCGATTAACAACACTGATTTGGACCCTTTTTTTGAGTTTATGCCATGCCATTCA TGTAAGCCTTATCAATTGTCATGAATGTTGAATTTAAAATGGCTGCTAGTATTTGAAAATTCCATAATTAACTCTTGCTC CCATATGTTGAATTTGGATACATTTAATTCATACTGTTTTTATCTCAAGCTTTTTATTTTTATTTTTTGATAATTAGTAA TTTTACTTGTGTAGTAATACAATTCAGACCCTTTCTTTCATGATATTTGTAACAGGACACTAGAGATCGTTCTAGGAACT TGGAATTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCACAGTGGCATGATGCAGAGGTGTGTCTTTCA AAATCCAAGGCCATCAAACCATACTCAGCTTCTCGATGTCATGCATCAGGTAAATAAGTTTGACTTTTTATCTTTGAGTT TCAAAGTTTTTCCATTTAATGTTTTTTCTGAGATGGAAATGACCAAACGTATGTGTGTACTGGTAGTGGTAGCAACAATA TCCAAACATAATCTGAAGTATGAGATTTTGCAATATGAACTTTGATAAAATGGAAAAAAATGAGGGGAATGAGGGGACTG TGAATGTCGGAGAATGAACATTAAACATTCCATCCAAGTTGCTTCTCAGACTTATATTTAATGATAGGGTTGTTTTATAT GTTAAATTTCACAGGTATGATGTATGAAGCAAAGGGTCTTTACAAGGAAGCTCTGACAGCTTTTCGCGAAGCTTTGGACA TTGATCCCGATCATGTCCCCAGCTTAATCTCCACTGCTCTAGTTCTCAAACGATGCACTAATCCATCAAATCCAGCGGTC AGGAGCTTTCTGATGGACGCGCTACGGCACGACAGGTTGAATGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGC TGAGGGAACAGCATCATCAGTGGTTGAAGCTGCAGAGTGTTTTCAGGCAGCATACTCTCTCGAAGAATCGGCACCGGTTG AACCTTTCAGATGA
CDS sequence (LotjaGi5g1v0154400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTGGCTACGCGCAGGAGGGGAAACATTGGGAGGAGCAGATGAAGTTTTCCCTTCATCTGAATCTATTGTAACCAA GGATTTTTCCATCAGTGGGCCATCGGGCCTTGCCGGACAAGTTGATAAGAAGCCGGATACGGGGAATATAGAAGAAGCTG AATCATCTTTACGTGAGAGTGGCGTCTTGAACTATGAGGAAGCTAGAGCTCTGCTGGGAAGATATGAATATCAGAAAGGA AATTTAGTAGCCGCCTTGCATGTCTTTGAGGGAATAGATATAAGTGCCGTGACTCCTAAGATCAAACTTGCCCTTTCTAG AAACAGAGAACACCAGAAGAGACGTTCCCAGAATCACGATGAGCCGCAAATGTCTATACATGCTGTTGGCTTGCTGTTGG AAGCAGTCTTCCTAAAAGCAAAATCTCTGCATGTTCTTGGAAGGTTTAAAGAAGCTGCCGTATCTTGCAAAGTTATTCTG GACATAGTGGAGTCTTCATTGCCCGAAGGCTTGCCTGATAATTTTGGTGCTGAATGTAAATTGCAGGAGACCTTGAGCAA GGCAGTTGAGCTGCTTCCCGAGTTATGGAAACTTGCTGATTGTCCGCGCGAAGCAACTTTATCTTACCGGCGAGCGCTCC TTCATCATTGGAATCTTGATGCAGAGACTATAGCGAAGATTCAGAAAGAATTCGTTGTTTTTCTTCTATACAGCGGAGGG GAAGCAGCACCCCCTGATCTCCGTTCCCAAATGGACGGCTCATTTGTGCCGCTAAACAACATAGAAGAGGCTATTCTTCT TTTAATGATTTTGCTAAGAAAAGTCTCTCTCAATAGAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTCGCTC TTTCTGTTTCAGGGGATTTGACATCTTTAGCTAATCAATTGGAAGAATTGCTCCCTGGGACTATCGATAAAAGAGAAAGG TACCATGCTCTTGCTCTCTGTTATTATGGAGCAGGTAAGGACTTGGTAGCACTGGATCTTCTCAGAAAATTATCGAGTAA TAGAAAGGAACCAAAACATGTTCCAGGTTTGTTATTGGCTTCTAAGATTTGTTCTGAGAATCCCAGTCTAGCCGAAGAAG GAGTAAGATTTGCTCAAGGAGTTCTTGAGAGTTTAGATGGCAGGTGTAATCAGTTAAAAAATCTCGTTGAATTTTTTCAA GGTGTTTCATTGTCAGCAACCTCGAAATTGCCTGTTTCTGATTCTGAGAGGCTTAAGAGACAATCTGAGGCGCTTCATGC CTTGGAAAATGCTGCCAGAACGAGTAAAATGAGAGATCCCCTTGTGCTATATCATCTCAGTTTAGAATATGCAGATCAAA GGAAGTTGGACTCGGCACTTCATTATGCAAAGTGCCTTTTAAAACTGGAAGGTGGTGCTAATGTTAAAGGGTGGTTATTG TTAGCTCGGATATTATCCGCTGAAAAACGGTTTGTGGATGCTGAATCTATTATCAATGCTGCGTTGGATCAGACTGGGAA ATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAGTGCCATTGAGACAT ATACCCAGCTTCTTGCTGTCCTTCAAATCCAGAGTAAAAGTTCTGGTTCCTGGAAGAAGTTGAACCAGGACACTAGAGAT CGTTCTAGGAACTTGGAATTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCACAGTGGCATGATGCAGA GGTGTGTCTTTCAAAATCCAAGGCCATCAAACCATACTCAGCTTCTCGATGTCATGCATCAGGTATGATGTATGAAGCAA AGGGTCTTTACAAGGAAGCTCTGACAGCTTTTCGCGAAGCTTTGGACATTGATCCCGATCATGTCCCCAGCTTAATCTCC ACTGCTCTAGTTCTCAAACGATGCACTAATCCATCAAATCCAGCGGTCAGGAGCTTTCTGATGGACGCGCTACGGCACGA CAGGTTGAATGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGAACAGCATCATCAGTGGTTGAAGCTG CAGAGTGTTTTCAGGCAGCATACTCTCTCGAAGAATCGGCACCGGTTGAACCTTTCAGATGA
Protein sequence (LotjaGi5g1v0154400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKWLRAGGETLGGADEVFPSSESIVTKDFSISGPSGLAGQVDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKG NLVAALHVFEGIDISAVTPKIKLALSRNREHQKRRSQNHDEPQMSIHAVGLLLEAVFLKAKSLHVLGRFKEAAVSCKVIL DIVESSLPEGLPDNFGAECKLQETLSKAVELLPELWKLADCPREATLSYRRALLHHWNLDAETIAKIQKEFVVFLLYSGG EAAPPDLRSQMDGSFVPLNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTSLANQLEELLPGTIDKRER YHALALCYYGAGKDLVALDLLRKLSSNRKEPKHVPGLLLASKICSENPSLAEEGVRFAQGVLESLDGRCNQLKNLVEFFQ GVSLSATSKLPVSDSERLKRQSEALHALENAARTSKMRDPLVLYHLSLEYADQRKLDSALHYAKCLLKLEGGANVKGWLL LARILSAEKRFVDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLRSAIETYTQLLAVLQIQSKSSGSWKKLNQDTRD RSRNLELEIWHDLAHVYISLSQWHDAEVCLSKSKAIKPYSASRCHASGMMYEAKGLYKEALTAFREALDIDPDHVPSLIS TALVLKRCTNPSNPAVRSFLMDALRHDRLNASAWYNLGLLHKAEGTASSVVEAAECFQAAYSLEESAPVEPFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 713 | 706 | 0.0 | ||
| PANTHER | 8 | 713 | 706 | 0.0 | – | |
| MobiDBLite | 35 | 55 | 21 | - | – | |
| SMART | 133 | 166 | 34 | 180.0 | ||
| SUPERFAMILY | 418 | 540 | 123 | 1.74E-6 | ||
| ProSiteProfiles | 440 | 544 | 105 | 6.633 | ||
| SMART | 440 | 473 | 34 | 100.0 | ||
| Pfam | 448 | 504 | 57 | 0.0021 | – | |
| SMART | 475 | 508 | 34 | 50.0 | ||
| SMART | 511 | 544 | 34 | 97.0 | ||
| SUPERFAMILY | 512 | 685 | 174 | 1.08E-17 | ||
| Gene3D | 563 | 711 | 149 | 4.7E-16 | ||
| ProSiteProfiles | 567 | 600 | 34 | 6.933 | ||
| ProSiteProfiles | 567 | 707 | 141 | 16.469 | ||
| SMART | 567 | 600 | 34 | 12.0 | ||
| SMART | 601 | 634 | 34 | 0.0032 | ||
| ProSiteProfiles | 601 | 634 | 34 | 10.738 | ||
| Pfam | 602 | 634 | 33 | 1.6E-4 | ||
| SMART | 671 | 707 | 37 | 56.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0154400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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