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LotjaGi5g1v0161200.2

Overview

Field Value
Gene ID LotjaGi5g1v0161200
Transcript ID LotjaGi5g1v0161200.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|E0WC42|E0WC42_SOYBN CCAAT-binding transcription factor family protein; Found in the gene: LotjaGi5g1v0161200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:41408728..41414844) extracted from Lotus japonicus Gifu genome v1.2.

TGTGGTAAAATATCTATCATCAATTCAATTCATCATCAAGCAAAAATTTTAGGTAAACATAGTAGTACCTTGTGTTCTTG CTGTTTTGTCTGCCTCAATTTGTCCTGTAACCTGAATCCACCAATCAGAACTTTCCTTAGCGCGCCAAACACAAAACCAC CACAACATCATTCATTGTCTCTCATTCACACTCACTCACGTACCATTTGCAGAGAGGTAACCAACCATTCAATTTCACCC AATTCATCTTCATCCATCCATTCATTCATCTTCTTTTTTCAGATCTCACCCTTCAATCTTCATCATTCTCCATCACCAAT TAATTTTCCAAACACAGCACACTGCATTGGTTCGTGATTGTTGTTATTTCTCTGATCTATCTGATTCGATTCTGAGTTTA GGGTTTTGTGCGCCATGGCGGATGCACCAACCAGCCCCGTCGGCGGGAGTCACGAGAGTGGCGGCGAGCAGAGTCCGCGT GGTTCAGCGCGGGAACAGGACCGGTACCTGCCAATTGCCAATATCAGCCGGATCATGAAGAAGGGTTTGCCGGCTAATGG GAAGATTGCTAAGGATGCTAAGGATACCATGCAGGAATGTGTTTCTGAATTCATCAGCTTTATTACCAGCGAGTAAGCCC CAATAGCTAACTATTTCAATTGAAATTGAAATGCTTGAAAAAGTTGAAAAAGTTAAAAAATTGCAATTTTTCCTAATTGG GGTTGCTTAGAACATATGACTAGTGCGCGTCGCGCCTCTTCAGCGTGTTTGATATGATCCTATGAAGCACGGACACCTCT GAAATATGAGTGTCATGGTGTCGGAAACCAACACTGTGTGGCAATTGGGGTTTCTTAGAACATATGATTAGTGCAGTGTG ATATGACTTTGATGTTGGGGGGTATGATATTAGGGCTGCTTGTTGTTTGTTTATGTGAATTGGACATGGTTGTTGTTGTA GGGCGAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGAGATGATTTGCTGTGGGCGATGGCTACGTTAGGA TTTGAAGACTATATAGAGCCGCTCAAGTTGTACCTAGCAAGGTACAGAGAGGTAATTTTATTTTGGTTAATTCATAGACA ATATGTGGATATTTGTGAGAACTTGATGAGACAATTGGAATCACCTATATTAGATCCTCATCCTAGGAAAATGACTCTTT TGAAGTGTTGAGTATTGGTGATACATAAAAATGATGAATTTATTCTTCTTACTTTTCATTTACTTGTCTATCTTGAGTTG TTGATGGATGTTTGGTTGGATGAGAGAGGTGGGCTGGGGGCCATTTCATTGAATGGATATATAATGTTCTCTTTCTTTCC TCTTCATTTTAATGCTGAAGTTTTGATTGCGTTCCTTATGGCTTTATAGTTATCTGACTGTTTCTTTTACCTTTTTTATT TGCTCGGTGATTTTGAAATGTCTGCAATTATCACAGTTGGAGGTTAGTTAAATCCTCTCTGCTTATTTGTATTGCTTTGT TATTAACCTTGGACTATTTTGCCAGTTGAAATTCTAATGTCTGTGAATCATAAATTCTGATAGGGTGACACTAAAGGATC TGCTAGAAGTGGTGATGGATCTGGTAGACGAGATCAAGTTGGAATTGCAGGTCAAAATGCTCAGGTGTGATTGCTCAACT TTTATGGATATATGTTTTTGGTTTAAGAGTTTCTATTCTAATGATTTATTGGTGAAAATAAGGTTCAATTCGTTAGTTAA TTTGTACTTCTCTGTGTTGTTGGTTTATGCATACGGCAGCTTGTTCATCAGGGTTCGCTGAACTATATTGGTTCCCAGGT AACACTCCCTTTCTCTGACTTTCTTGAATGCATGCATGCTCAATTGTAGAGATTCAAGAAATTAAGACACTCTTAGTAAA ATAAAATAAAAATATGAAATATTATTTAAGGCCAATAGGCCATGGTTGAGCTTCCTAAAAATAGTCCATTAAATCAGTCC AAGCACATTGGGAAGGAGAGTTCAGACTCTTTACTCTTATCTAACCGGAGCATTGTTCATATAATATCATCACCCACGTA CTCATTACCAAAGTAGAGCTGTTGAATGGAACATAGGCACATTGTCCTTACTCTCCCATGTTTCTATACCATCTCAGTTT TAGGACCATGTCTTTTTGACTGTTGTATACCTTTGTTAAAAATAATGTTAATAGGGAAAATAAGTATGATATAATATTCT GTAGGTAATCATTATAACTTATAAATAGTGAAATCATGAATCTTGTATTTTTGACAGGTATTATATAATTCACTCCGTCG ATTCACCCAATAGTCTCTCATGTTCCCTCTATTTCAGCATGGTCTAGAGCCTGACTAGAGCCAACCCTAATCCGTGATTA CCCTGTGGATCCACTGTCCATTGGTGCAAATATTTTTCAGAAACCTTGGATTATCTCATCTTTCTGGCTCTTGTCCCTGC TGAGCCTTCACTCTGGCAGATCTGTTCCTTTTTCCAGCCATCATCGCTGTTTTTTTTTTTCGCCCAACCTCGCCGCTGCT CACCGCGGTCAGCCACCCTTGACACTGTTGCAATCACCCTGCCCATATCAGCAAACCCCGATGGTATAACAACCATCCGC TGCCGCACAGTCTGCAATGCGCCACCTCTCTATCGACGCGTGAGATCCACATGCCTATTCAACATGTTACCTTGTCCTTC GCTTAACTTTGACATACTCATCACCAAGATGTTTCACCAGGTTCCAGGTTTCGGTCTCTTTGGACCATTGGCTATGCTTG CTCCTCATTTCTCATACCTTGTTAACTAGAACAAACTGGACTATAGGTCTAGTGAATGAGTATTTCTTGGCTAGTCATCT TTCCATAATGTTTACAAGTGTCTTTATCTCGATGTAGGGCCTTTATCTCCAAAGATATTATTCTTTTCTATGAGCTCAAG TTCCGTTAGATCTGTTTTCATAATCTCCTGCTCCAAACTCTTCTCCGGTCTCTTATTATGCATTTACATTTTGTTCCCTC TTCTTTATAACCTAACATTTCTATTCCAGTGTCACATTCCTCTTCCACTTCTTCCCTGGAGTCATGCACAGTTACCTCAT CTCCTATGAGGAATACCTGATCCAATTCTTATTCCCCTTCTTCTCATTCAGTTGACCTGGTCTCTGCCCCTTAACATTCA CCCAATACAAACTAGGTAAAAATCTGATGTCCATAAACGTATTAAGTCCATACACTTCTCTTAACTGACATGGAACCATT AATTATAATGCAAGTATTGGCTGATCCCTTATGGTTGGATTCTATGAAGGTTAATTATGATGTCCTTCTTAATAATTCTT CTAGGACCTTGGTGCCTCCACCTGGCATCGGTAGCCCATAGGGTGCAACTGGGTCTTCTGGTGTAAAAAGAATTCTAATG GCTATATTAACAAGTATGAAACAAGGTTTGTTGGCAAAGGGGTTTGTCCTACAGTTAACCTATCACTGATAGGAATTTTA GCCTTATCTCTCACCTGCAAATGGCCTTTACAGCAGTTTGATGTTGATAATGCCTTTCTTATATGATTTCTTGGATGAAA GGTCTATATATCCAACAACCTCAAAGTTTGGAGTGGAGGAAAAGTTCTTAGTTTATAAACTTAACAAGGCTATCTATGAT TTTAAGCAGGCCCCGGGGGCTTGGTTTGAGCACCTTGATGCACTCCAATCAACTTCAGATTCCGGCCTAGTAAGTGTTAC CCCTCCCTGTTTACTCTATTTGGGTCTCAACATGTTCTCTATGTCCTTGTCTATGTAGACAATATCATAGTTATTGGCAG TTCTCTTCCTCTAATTCAGAAGCTAATTACGGGGTCAAATTCACTGTTTTCACATAATCAGCCAGGTAATTTGGGTTAAG TCTTGGGTATAGAGGTCAAATATTCGCTGAATGGTTCATTCTTACTGGCACAACAGAATATTCATGACCTGCTTGCTAAA GCACAACTTTCTGAAGCAAAAGGGGATCTCCACACCTGTGGTTGGTGGATGCAAATTGACTAAATATTGGAATGACTTTT TTTTCAAATCCAACTTTGTATACATCTGTGGTTAGGAAACAACTCTGAAATTGTCCCTCAGCCACTTGAAGATTACTTAA AAGTTGTAAAGTGGTTTCCTAGTTACCTCTAGATACCATGCATCATCAGCTGATCCTCATAAGCTCTTGACTCTTCAAGC CTTCTGTTATGTGATTGAGACTTTGTTTCTGATGACAGAAGGTCCACGTTTGACTCTTGCATTTATCTTGGCCCAGATAT GCTGTCATTGGTGGTCAAAGAAGTAGCGTCTAGCTGCAGGGTCCAGCAAAACATCTGAGTACCTCATATTGGATCCAAAC CCTGATCTTGGAAGTGAATGTTCCTACCGCAGTGCCTCATATTCTTTGTGTCATGATCCTGTGCTTCATTCGAAAGAAAA CATATAGAATTAGGCCCTTTCTTTATTAGAAAGAAGGTAATCAGGAAATCCTTTAAGTGATACATATCCCTGCATTCTCA CTAAAGCGAGCTTACTAGGTTCTGTGAATTAAGGGACAAACTCAGGGTTTGTGACTCATTCTGTTTGACACTCAACTGCC CTGAGTTTGTAGAGGGAATATTGAAGTCGCTAGTTTCTTGCTTGTTTATTTCTTTCAGATGTATTTAGTTACTATGATTT TCCAAATCTTTTGTCCCCTCTTTTCTTTCTCCTTCATAGAAGTTATATGAATATGATTTTACATGTTCCATCCTCTGCAA AAGGCTGTGGTTCTGTCTTTTCACTAGTTGAGTGCTCGTAGCGTTGGGTGATGGGTGTCTAAAAGTTTGTAAACATTTTA TGTAACGTATAGAAAATACACATTTCTATAGACCTTTCTATAAGTAAAATGCTGGAGGTCTAACTAGACTTCGTGTGACA AAAGGTTATGGGATGGTTTCTTTCTATAATTTGGCTTATGTTCAAACATAGAGCTCAGAATGTTGGACTTTATGTTGTCC TTCAGAAAATGTCTAGGATGATAGCTTTCTTGCATGATCGGAAATATAATTCATAATGGCAAGAATCAGATAGCCATGTG TTGCTGTTTTTGCATGTTTCATCTTTGCAGACCTCTTTCTTTGAAGATCATAATAGTCATGACTTGAGATTTCCTTGCTT ACAGTTTTACGTTAAGAACAGCTCTCAAGACTAGTAACATTTTCTTTAATCTGTTGTGATTTGCAGGTGCAGCCACAGCA TCTGGTCATGCCCTCAATGCAAAGCCATGAATAGATTAGATGCTTATTCCACTCATCTTAATTATTCCACTTAAAATGAT TGTGCACATGGCATGGACAGAAACAATGGTTTGATAATTTAAAAAATTAGGTTCTGGTGTAGAAGGCAAGGGTGTCAGAA TTTTGTGGCAGTGCTCATGTAGGTTTTTGAATACATATATCAGAATTAGCTTCTGACTGACTAAACGGAGAGATAAGTGT GGGTTTTTTGCATATGATTCGCCATGTAGCTTGTGATGGTGAGATACACCTGCTTTGGAAACTTCATTTAAATTATATAT TGTAGGAATGAAATCATTTTGTTACCATTATTGTTCTTCTTTTGCTCCTACTTTCTTGTCTCCCGAAAATGATTTCTGTG TCAATTTTCCCATGTCATTTTTTTCCAGCTCAATTATTGGCGACAAAGAAACCTGATGGTCATTGTCTTTGAGTCTACTT AGCAAAATTAGCTGATAAGTTAGTTGAAGGTTTATAAATTAGGTTATAGATGAAAGTTGAAAGATGACAAACTAGTTGAT TAAATTAAAAATGCAGTAGAGGAATCACCACCTTCATCTTTGAGAGGTTTCTTGGGTTCTTAGACTGATCCAACGACGCA TATTGGTGGTGGAATGGAACGCTCACAAACCCCATTAAGTCTGTGCTTCAATTTCCGTTATACTTAAAGTCGATTTTTGT TGAATTTAACATGATAGAATATTGCTTATCATATCCACATTGAACTCAATGTGACAAATTATCATTTCTTCATTGACACT TGATATGCATGAAATTGCATTTGCATAAGAACAAACG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0161200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGATGCACCAACCAGCCCCGTCGGCGGGAGTCACGAGAGTGGCGGCGAGCAGAGTCCGCGTGGTTCAGCGCGGGA ACAGGACCGGTACCTGCCAATTGCCAATATCAGCCGGATCATGAAGAAGGGTTTGCCGGCTAATGGGAAGATTGCTAAGG ATGCTAAGGATACCATGCAGGAATGTGTTTCTGAATTCATCAGCTTTATTACCAGCGAGGCGAGTGAGAAATGCCAGAAA GAGAAGAGAAAGACCATTAATGGAGATGATTTGCTGTGGGCGATGGCTACGTTAGGATTTGAAGACTATATAGAGCCGCT CAAGTTGTACCTAGCAAGGTACAGAGAGTTGGAGGGTGACACTAAAGGATCTGCTAGAAGTGGTGATGGATCTGGTAGAC GAGATCAAGTTGGAATTGCAGGTCAAAATGCTCAGCTTGTTCATCAGGGTTCGCTGAACTATATTGGTTCCCAGGTGCAG CCACAGCATCTGGTCATGCCCTCAATGCAAAGCCATGAATAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0161200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADAPTSPVGGSHESGGEQSPRGSAREQDRYLPIANISRIMKKGLPANGKIAKDAKDTMQECVSEFISFITSEASEKCQK EKRKTINGDDLLWAMATLGFEDYIEPLKLYLARYRELEGDTKGSARSGDGSGRRDQVGIAGQNAQLVHQGSLNYIGSQVQ PQHLVMPSMQSHE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 30 30 - –
PANTHER
PTHR11064
2 173 172 1.8E-102 –
PANTHER
PTHR11064:SF114
2 173 172 1.8E-102 –
Gene3D
G3DSA:1.10.20.10
22 153 132 9.9E-46
IPR009072
SUPERFAMILY
SSF47113
28 144 117 2.02E-41
IPR009072
Pfam
PF00808
31 95 65 1.1E-28
IPR003958
PRINTS
PR00615
59 77 19 2.2E-21 –
ProSitePatterns
PS00685
62 78 17 -
IPR003956
PRINTS
PR00615
78 96 19 2.2E-21 –
PRINTS
PR00615
97 115 19 2.2E-21 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0161200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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