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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0162400 |
| Transcript ID | LotjaGi5g1v0162400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G12770.1 mitochondrial editing factor 22; Swiss-Prot: sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770; TrEMBL-Plants: tr|K7LKB2|K7LKB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0162400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:41658337..41661249) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAATTGCTCGTATTGCTTTCTTCCCATTTGAAGACCTCTTCATTCTCTGCACTGCACCCGCCAAAACTCAACGCTCT TATGGTTCTGAGGAAAACCTTTACCCTCACAACCTCTCGTTATCACACTTCTGCCACTGCCTTCATCACACCGCATAATC TCCTTGAACTTCTTCAGCTCACCGTCGACCACCGTGCTCACAGACTCACCCAGCAATGTCACGCTCAAATCCTCACAAAC GGGTTCGCACAAAACCCTTTCCTCACCACCAGGCTCGTCTCTGCATACGCCACTTCTGGAGACTTAAACATGTCACGCCT CGTTTTTCACTCCATTGAGGCCAAGAACGTTTACCTCTGGAACTCGCTGATTAATGGGTATGTCAAGAATCGTGAATTTG GCCATGCCCTTGTGTTGTTCCGCGAAATGGGTCGCAGTCATGGTGGTGATTGTGTGTTGCCGGATGATTACACGCTTGCG ACGATTTCCAAGGTTTCCGGTGAGCTTCAGGACTTGGTTTACGGGAAATTGATTCATGGGAAGAGTGTGAGGGTTGGGTT TGTGTCTGATGTTGTTGTTGCGAATTCGGTGATGGCAATGTATAGTAGGTGTGGGGAGTTTGGTGATGCGATGAAGGTGT TTGATGAAATGCCTCAGAGGAATGTGGGGTCATTTAATGTTATGATTTCGGGGTGGGCATCGTTGGGGAATTTTGCTTCG ACTTCGGGAGGTGATTTGTGGTGCTTTTTTCGAAGGATGCAATGTGAAGGGTATAATGCTGATGCTTTCACGATTGCGAG TCTGCTGCCTGTGTGTTGTGGTAAAACTGGGAAGTGGGATTATGGGAGGGAACTTCACTGTTATCTTGTGAAGAATGGAT TGGATTTGAAGATGGGTTCTGATGTTCATTTGGGGTCTTCTTTGATAGATATGTATTCGAGAAGCAAGAAACTTGTTCTT AGCAGGAGAGTGTTTGACCAGATGAAAAGCAGAAATCTATATGTATGGACGGCTATGATCAACGGTTATGTGCAGAATGG AGCACCTGAGGATGCATTGATTCTTCTCCGTGAGATGCAAATGAAGGATGGGATGCGACCCAATAAAGTATCACTTATTA GTGTGCTTCCAGCTTGTGCTTTGCTTGGTGGATTAATCGTAGGGAAACAGATACATGCGTTTTCTACTAAAGTGGAGTTA AATGGCGATACTTCCCTATTTAATGCTTTAATTGATATGTATTCCAAATGTGGGAGTTTGGATTATGCAAGCCGAGTCTT TGACAATGTTTCTTACTTCAGAGATGCTATCACTTGGAGTTCAATGATCTCTGCATATGGATTACATGGGAGAGGAGAGG AAGCTGTTGTAACATATCAGAAAATGCTTCAGCTAGGGATCAAACCAGACATGATAACAGTGGTCAGTGTTCTTTCTGCT TGCAGCAAGTCAGGGTTGGTAGATGAAGGGATGGGTATATATAACTCACTGATTACAAGGTATCAAATGAAACCAACAGT TGAAATTTGTGCTTGTGTTGTAGATATGTTAGGTCGATCAGGCCAGCTTGATCAAGCCTTAGAGTTCATCAAAGGAATGC CTTTAGATCCTGGTCCAAGTGTTTGGGGATCTCTTTTAACTGCCTCTGTAATGCATGGGAATTCAATGACAAGAGACCTT GCTTATAGGTGTCTCTTAGAGCTAGAACCTGAAAACCCTTCCAATTATATCTCGCTTTCAAATACATATGCTTCTTATAA AAGATGGGATGTGGTAACTGAGGTGAGAACAATGATGAAAGAAAGAGGTTTAAAGAAAGTTCCAGGTATCAGTTGGATAA CTATTAGTGGTAATACTCATTCTTTTGCTGTTGGTGACAAAGCACATCCTTCTTCTAGTTTAATCTATGATATGCTTGAT GACCTTGTAGCAATAATGACAGATGGTTGTGCTGATATGGATATTCTTGCTTAAACCTCAGCCATGTAGCTCAGCCAACT CTGGAACTGTTTGTTTAGCAATCACTCAAATCTCAATACTCAATATCAGATATGCATATGCTATTTCATTACTTGAGGGT GAAAAACGGCAGAAAAGCCCCAACTTATCAAGCATGGTGACTGCAATCAGTCCCCCCCTGAGATACTGAGAGCAACAAAT TCTGCATGTACTCTAACCATCTGGAATAAGAAAAGGGGAGGAAAAAACCCTTAAAGATAGGAAACCATAGGGAACCATAT ACCAGAATAGGGATCTTGGTGGAATTCACGTCCTGATTAACAACCTGATACCAGGGGTCTTCATTAGAAATGTAGTAGCA GTAACAGGAAGTTGGCAGAATGTGTTAGCAGATGTTGATTCAACTGTTCGTGCCGCAGAGAGAGAAAAAATTTGTCATAC TATCAGTTTCAATTTTCTTTGATGAAATTTTGGTTGTTAGCTTAAATCCTCTCTTCGATAGTTTGCCTCATATCAAGATG AATAATTATTTTCGAGTAAATGTTGGATGAAGGATCGAACAAGACCCGATCTTCTCTCAAACTGATGGCCCGAGTCCGGA ATTCTCCTTCGCCAGTGATCTTCATCATCTCCAATATGTAGGTTCTATGCAATGACATTCTGACGCCCAAATCAGAATTA TCTTTGTAGAGTATTGATAGTGTCAATTGTATGAACTTGTGTAATTATAGGCCTCATCTTTATAAGGAGAGAGGAGGACA AACTCTCGACGAGTCAATGTCATTTGAGTTCTCAGGTACAACAGTCAACAGAGGATGAACTTGTTCAATCCCCCTTGGTC TGGTATGGGCTGATCAATATGTATATTACTTAGGCTGACCGAATCATGTATTAAATGGGCCGGGTAACCCATGATCCAGC CGGATCAAAACCCAACTATAAATAAAGAAGGAC
CDS sequence (LotjaGi5g1v0162400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTGAGGAAAACCTTTACCCTCACAACCTCTCGTTATCACACTTCTGCCACTGCCTTCATCACACCGCATAATCT CCTTGAACTTCTTCAGCTCACCGTCGACCACCGTGCTCACAGACTCACCCAGCAATGTCACGCTCAAATCCTCACAAACG GGTTCGCACAAAACCCTTTCCTCACCACCAGGCTCGTCTCTGCATACGCCACTTCTGGAGACTTAAACATGTCACGCCTC GTTTTTCACTCCATTGAGGCCAAGAACGTTTACCTCTGGAACTCGCTGATTAATGGGTATGTCAAGAATCGTGAATTTGG CCATGCCCTTGTGTTGTTCCGCGAAATGGGTCGCAGTCATGGTGGTGATTGTGTGTTGCCGGATGATTACACGCTTGCGA CGATTTCCAAGGTTTCCGGTGAGCTTCAGGACTTGGTTTACGGGAAATTGATTCATGGGAAGAGTGTGAGGGTTGGGTTT GTGTCTGATGTTGTTGTTGCGAATTCGGTGATGGCAATGTATAGTAGGTGTGGGGAGTTTGGTGATGCGATGAAGGTGTT TGATGAAATGCCTCAGAGGAATGTGGGGTCATTTAATGTTATGATTTCGGGGTGGGCATCGTTGGGGAATTTTGCTTCGA CTTCGGGAGGTGATTTGTGGTGCTTTTTTCGAAGGATGCAATGTGAAGGGTATAATGCTGATGCTTTCACGATTGCGAGT CTGCTGCCTGTGTGTTGTGGTAAAACTGGGAAGTGGGATTATGGGAGGGAACTTCACTGTTATCTTGTGAAGAATGGATT GGATTTGAAGATGGGTTCTGATGTTCATTTGGGGTCTTCTTTGATAGATATGTATTCGAGAAGCAAGAAACTTGTTCTTA GCAGGAGAGTGTTTGACCAGATGAAAAGCAGAAATCTATATGTATGGACGGCTATGATCAACGGTTATGTGCAGAATGGA GCACCTGAGGATGCATTGATTCTTCTCCGTGAGATGCAAATGAAGGATGGGATGCGACCCAATAAAGTATCACTTATTAG TGTGCTTCCAGCTTGTGCTTTGCTTGGTGGATTAATCGTAGGGAAACAGATACATGCGTTTTCTACTAAAGTGGAGTTAA ATGGCGATACTTCCCTATTTAATGCTTTAATTGATATGTATTCCAAATGTGGGAGTTTGGATTATGCAAGCCGAGTCTTT GACAATGTTTCTTACTTCAGAGATGCTATCACTTGGAGTTCAATGATCTCTGCATATGGATTACATGGGAGAGGAGAGGA AGCTGTTGTAACATATCAGAAAATGCTTCAGCTAGGGATCAAACCAGACATGATAACAGTGGTCAGTGTTCTTTCTGCTT GCAGCAAGTCAGGGTTGGTAGATGAAGGGATGGGTATATATAACTCACTGATTACAAGGTATCAAATGAAACCAACAGTT GAAATTTGTGCTTGTGTTGTAGATATGTTAGGTCGATCAGGCCAGCTTGATCAAGCCTTAGAGTTCATCAAAGGAATGCC TTTAGATCCTGGTCCAAGTGTTTGGGGATCTCTTTTAACTGCCTCTGTAATGCATGGGAATTCAATGACAAGAGACCTTG CTTATAGGTGTCTCTTAGAGCTAGAACCTGAAAACCCTTCCAATTATATCTCGCTTTCAAATACATATGCTTCTTATAAA AGATGGGATGTGGTAACTGAGGTGAGAACAATGATGAAAGAAAGAGGTTTAAAGAAAGTTCCAGGTATCAGTTGGATAAC TATTAGTGGTAATACTCATTCTTTTGCTGTTGGTGACAAAGCACATCCTTCTTCTAGTTTAATCTATGATATGCTTGATG ACCTTGTAGCAATAATGACAGATGGTTGTGCTGATATGGATATTCTTGCTTAA
Protein sequence (LotjaGi5g1v0162400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLRKTFTLTTSRYHTSATAFITPHNLLELLQLTVDHRAHRLTQQCHAQILTNGFAQNPFLTTRLVSAYATSGDLNMSRL VFHSIEAKNVYLWNSLINGYVKNREFGHALVLFREMGRSHGGDCVLPDDYTLATISKVSGELQDLVYGKLIHGKSVRVGF VSDVVVANSVMAMYSRCGEFGDAMKVFDEMPQRNVGSFNVMISGWASLGNFASTSGGDLWCFFRRMQCEGYNADAFTIAS LLPVCCGKTGKWDYGRELHCYLVKNGLDLKMGSDVHLGSSLIDMYSRSKKLVLSRRVFDQMKSRNLYVWTAMINGYVQNG APEDALILLREMQMKDGMRPNKVSLISVLPACALLGGLIVGKQIHAFSTKVELNGDTSLFNALIDMYSKCGSLDYASRVF DNVSYFRDAITWSSMISAYGLHGRGEEAVVTYQKMLQLGIKPDMITVVSVLSACSKSGLVDEGMGIYNSLITRYQMKPTV EICACVVDMLGRSGQLDQALEFIKGMPLDPGPSVWGSLLTASVMHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASYK RWDVVTEVRTMMKERGLKKVPGISWITISGNTHSFAVGDKAHPSSSLIYDMLDDLVAIMTDGCADMDILA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 342 | 342 | - | – | |
| Gene3D | 5 | 150 | 146 | 9.4E-14 | ||
| ProSiteProfiles | 58 | 88 | 31 | 5.821 | ||
| PANTHER | 83 | 245 | 163 | 2.9E-101 | – | |
| PANTHER | 83 | 245 | 163 | 2.9E-101 | – | |
| ProSiteProfiles | 89 | 119 | 31 | 10.019 | ||
| TIGRFAM | 91 | 119 | 29 | 1.2E-6 | ||
| Pfam | 92 | 118 | 27 | 2.7E-6 | ||
| Gene3D | 151 | 247 | 97 | 1.4E-16 | ||
| ProSiteProfiles | 163 | 197 | 35 | 10.556 | ||
| Pfam | 166 | 195 | 30 | 6.6E-5 | ||
| TIGRFAM | 167 | 194 | 28 | 1.1E-4 | ||
| ProSiteProfiles | 234 | 269 | 36 | 8.177 | ||
| Gene3D | 248 | 358 | 111 | 2.0E-19 | ||
| ProSiteProfiles | 274 | 304 | 31 | 7.618 | ||
| PANTHER | 303 | 572 | 270 | 2.9E-101 | – | |
| PANTHER | 303 | 572 | 270 | 2.9E-101 | – | |
| Pfam | 305 | 352 | 48 | 3.0E-7 | ||
| ProSiteProfiles | 305 | 340 | 36 | 10.227 | ||
| TIGRFAM | 307 | 341 | 35 | 3.1E-5 | ||
| Phobius | 343 | 361 | 19 | - | – | |
| Gene3D | 360 | 472 | 113 | 8.8E-23 | ||
| Phobius | 362 | 630 | 269 | - | – | |
| ProSiteProfiles | 376 | 406 | 31 | 7.903 | ||
| Pfam | 379 | 401 | 23 | 0.028 | ||
| ProSiteProfiles | 408 | 442 | 35 | 12.09 | ||
| Pfam | 408 | 456 | 49 | 6.5E-8 | ||
| TIGRFAM | 410 | 443 | 34 | 1.8E-7 | ||
| ProSiteProfiles | 443 | 478 | 36 | 7.903 | ||
| Gene3D | 473 | 601 | 129 | 3.8E-9 | ||
| ProSiteProfiles | 479 | 509 | 31 | 6.489 | ||
| ProSiteProfiles | 545 | 579 | 35 | 7.706 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0162400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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