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LotjaGi5g1v0163600.1

Overview

Field Value
Gene ID LotjaGi5g1v0163600
Transcript ID LotjaGi5g1v0163600.1
Lotus japonicus genome version Gifu v1.2
Description PALE CRESS protein (PAC); TAIR: AT2G48120.1 pale cress protein (PAC); Swiss-Prot: sp|Q39089|PAC_ARATH Protein PALE CRESS, chloroplastic; TrEMBL-Plants: tr|I1L816|I1L816_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:41906736..41912711) extracted from Lotus japonicus Gifu genome v1.2.

AACCCATTTTTGGTTATTATCATGTAAATTCACAATATACAAATCAGATAATCTTGGACGAGGATGTAGGTGATTGTGTC TCTGCTTTAGCCTAAATCCCTGCCTTCATCTTCGTTCTCTCAAACCTTGTCTTGGTAGTAACTAAGTATAGTTACAGTAC TATCATGTCACTAGAAAGAAAACCAGTGAGACCCTTCACTCGAACTTGAACTGAAAAGTACAAAGTTGACACCTCTTCAG TGTTCCAAGCAAGGGTTCAACTGGGTTTTTTTTCTGTGTAGATGAAGCTCCTCACTCTAACCTCCACTTCTCTCTTGTCA GTTCCTCTTTATTGTTCATCTTCTTCTTCATCCCTTGTAACAACACTTCCTGCATCATCTCCCTCATCTTCTTCTTCTTC ATATAAATGCACATCCGGCGCAGGTTAGTCCTCTCCACCACTCAATTGCTCTCAAAATTGATTTTTTCCTTACATGTGTT GTGGGTTTTGCTGGCAGGTTTAAGGAGATGTGTTAGCAAGGAAAAGGAAGAAGATGTGCTTCTAGAAGGGATGCCAGATC ACTACTATGATGATGTGTGTTTGCACCTTTCTCTAACTAAGACTTCATATGTGTTTTTCAGTTTTCACTCATTGCTTAAT CATGTTTGTTTATCAGAATTTGGCTCTTCTAGGCATTTTTTCATGCTCTTCTTAAAAGGGGTATCACTAAAGTCAATTCA TCCCCCTTTAATTGCCTTAATACTATCTAAGTATTTTGTGTTTGTTGTCAGCTTCTAACTACTCCTTCTTGAATGTAATT TGAATTTCCCTGATTATATCTCTGGAGGAAAAATGTATTAGCTTCACTGAAACATGACTTGCAATTTTGTTTTCAATTTT GAGTTCAATTGGTCAACTAGGCTGTGCTTCTACTTATAAGTTACTATCTTGTAAGAATATGTTTAGGGCAAATATCATCT TATCTTTGATGCCGGACATGATTCTGATTTTCAATTTTGTTTTCTGTTTGGTAACTGTGGTATCAAATTGTACGGTGGAT TAGCGCTCAGTTTTTGACTTGGTTGGTGACTATGAATTGTAAAAGCATAGTGAAATTTGGGGTGTCTCTATTGTGAAACC AAAATTTCTGGAAGGTTTTATTTGGATAGATTTCATTAACAGTCTCCAGTATAGGAATGGCAAGCCAAGCAGCGGAAGAA GACCAGGGAGTTGCATCGAAAACGCAGACTGGAAGAAGAGGAAGAAGAAATGAAAATTGATGAGTATCGTGAAATTGGCA TGCGGCTGAAGGGATACCCAGAAGAAGATGTTAGAAAAGCACGGAAATTGGTTTCAAGCTTTATAAGAGCTGCTGAAGAA GTTGAAGAGGTAATTTCTTGGTGCAGCAATATCCTATTCCAAATCATTATGCAGATAAAATATTTCATCATGAGAAAGTG TTCATTTTAACGTTATAAATACACCTATTGCATCTTAATTCCTCCGAAAATTTATATTGTATTTTGAACATCGGATAAAT GTTTAGGGTTCACCTTGATAAAATGTTTGCTATCCAATCTAAAGCTTGGAGTGCTTATTTCTTGACCATATAGAGGTCAT CTCTTTCATTCGGTGAGCATCAAGAATCTTATTGATAGGATTTCATATCACTTGGGTTGTTAGTGAGTTAGTCACGTGGG TTGTTTAGTTAGTCTTAAAGGGAAGCCTATAAATAAGAAAGGGTTAGAGAACATTAGTCATCTTTGTATTCAGTTAGGAA TTGGGTTTAGAGAGAGAAGTGGTTCTCTTTCTAGGGTTAGAGAGGGTGTTTGGTATCTCTCTCATGTATCTTTCCCCTAA TCCCCAATTGGGAATTAGGGTTCTATCAATAAACTACTGCTAATTTTCTGGTTTCTATCACTTATTGTAATGCAATTGAT ATCCTTGGTCATTCTAACTATAATATGGAGTCAAAGTGATAAGTGGACCAAACTTAAAACTGAAGCATATATAGGTAGGC GTTCTTAATGTTATAAATTTGATAACTGAGCTGCTAAGTTTTGATGCATCTGGCAACGAGTGGGAGAGAAAGCTAATTTT CTGGTGGTCATGATCACTAAAAGGAATTTTCTGCAGTTGTAACTAAAGGACATCATGATGTAGATGCCAAAAGAAAAAGT GTGACTAATGAAAAGCAAGAAGAAAAGGAAAGTAAGCGCATTATGCTATTGCTAACATGGTCTGCATCATGATAGCCATC CTAACTTGTTTTTGCATACAACTTTCCTCTTATTCAATTAGATATAGTTTGTAGTGATTGAAGTTGTTTATTTATGATCA ACTTGTGTGTCTTTTGTCCTAATAGGAAAGAGTGGTATTATAAAGAATTAAAAAAAATATTTTAATTCCTGATGGCATAA GCCTTTTTTTGCTTTCAGTTGTTTGTGTAGTATTGTGCCTGTTTTTGTCAATGATATTTTCTTTTTTGAAGTGTCACTAG AATTTAACGAAATTCAGAGTTACTGACTGACCATTTTTCTGGTAGAAAATTGAGGAAGCCGCTGAGAAAGGAGAACTTGA TGAACTTGTCTTAATGGTCATATGGAATCGCCTTGATCTTGCCCGACGTGATGTAAGTTGGTATTTTAGCTTCTGAAACA TTCTTGGTATATATATATGATAGGATCTGACTTAGAAGAAAGAAAGAAAGAAGAAGAACGGTGATTGATTGAACTCTGCT CTCAGAGAATGAGAGAAGCAGAGACGGAAAATATGAACAATTGCACCTGAAATTCGAGTGTCCAGATTCACTCCCCCCAA AATGATCCCAGTTATTCCCTAATCACTCTCTCCCTAACCTACTCCTCATATAGGAAGTAGTTAGTAATTCCCTACAACTG ACTAGTAACAGAATGACAACAGAAAAACTACTAACAACTAACAAGGGAATTATTCCCTGCTCCCCTGCTTACATCTCCTA GCATAGACCTTCCTTATTTGGGGTCGATCCCTATCAATATATCAGTTAACTTTTACACAGGTCACAGGGTATCATTTTTT GATGAAAAAGAAGTTGCATATAATTTTTTTTTTATCATTTTCCCATGACCTGATCCATTCGATTGTAAATGCTCTTCACA AAATTCGTAAGATAATCATTGGCACTGTGGAGGATTGTGTCTCCAATTATCGGATTTTTGGCAGCGTGATTAACACACTG GTGTTTTTCGGAAGTTGAATCAACTCCATTTTATACATAAAGATGATATACAAACATTTTGAAAATATTATAAAACTTTT GTTAGATAAAATTATAACTAAAACAATACTATCTTTTTAATTGTGCTAGAGTAAATGTCAACTTCTTCAGTGTCACAAAA GTAAATTGTTTGTATCATTGTATGGTATCAATGAAGGACTCTTTCAACTTCTTCAGTGAATTTTTGTTGCTGAGAGTAGC AGCTACTGATAGCCACTATGTTGTTCTTTACAATAAACTTCTATCATGTTGCAATTTTTTGATATGATAGCATTATAATT TTCTAAGAAATTTCAGTATTCTTTTAAAAACATATATGACTCATGTAGTTGACAGTTAACTGTCAAAAGGAAAAAAATAT CATATAATCCTTTGATTTAGTGGGTGAAAGAGTGGATAAACATTATTTAATAGATGTTTTGGTCCCAATGGATTTCAGAC CAACTGAAAATTTTCATCCGCTTTGCATTCCTCATTCAGGCTGTCAACTGATCACAGCCCTCCTACTCTATCATCTGGCT GGCATCATACCGATATTGGGATCAACACATTATTAAGCCAAATAATTTATTATCTTTATAGGCTTTCTAAGAAATCAAGA ACTGAGAATTGTAGAAGATAGATGAATCTTCAATCAATGAATCAATGTAATGAATGAATCTATTACAGTGAAACACTATA TATAGTGTGATTAACTTCTAACTATCACAATTAGATATAACTAACTTGTCCAGCTGTAATGCCAGCTCAGCTAACCAAAA CAACAAACCAAACTAACTAACTATTATTACACTGGAGTCCTTGAACTATTTCTGCTTATCACTTTAGTCCTTATTCTTTT ACAGGCTTGTTAAGCAAAACGTGATTAATTATGTTCCTTCTTTTGTATCATCCTATCTTATATATCATTATGATATTTTG AAAGCGATTGACCGAATTTAATCTTAGAATCAGTCCAGTGTCTATTTCTTAAGAAGTTTGAATAATTTTTTTCATCATCT TACTCTCACTGTCTTGTTTTCTAAATTAATTTATCACCTCTTTACAGGATGAAAAGGATGCAATTAGAAGTCTGGATCTG CTATACAGAAGGGTTGAGGTAATTAACTGCTCCGCTTTCTCTTGTGACTATTACTATCACATACTACACATATTACCTCA CCTTAGTACTCCTTTAGTTGGTTCTGAGTCTTATTTCCCTGTTCTTGATTGTAGACTGAGATTTTGAAACAAGAGGCTAC CCCTGCGATGAGATTGCTCAATGACCTGTTGGTTATGTATGATGGCTTTAATTTAGAAGAGTGGCTGAGGAAATGCAAAA AGATCATGATTGATACATTTCCACGGGAGGATCCATTTAGTATTCTTGTTCCACCAGGTTTCGAGTCATTTGACTTAGAT AAGGTAAGCTGCAGCTACAGATTAAATGGCTTAGACTTTATTCATGTGATGTCTGGTTGCTCCTATAAGAATTTTCCCCC TCACACGATAATAGCTGAAGCTGTTTCTCATCATATATATATGGTTGAAGGGGATTCTATACTGCAAATGAAAGTATCAA TACCACTTATAATTTTAACCAAATCTATATTTAAATAACCAAATGTTGTCTACTTCACCATATTAAATAAAGGGATTTTA TCCAATTGATTATGTTTGACAAAAATAAGTTCACGATGATAATTAAAATCAACCATTGATATAAGTTAGTTGAACTTGAT TCAAGATTATTTGCTTGTACATAAGTTTGGTTAAAAGTGAGGTGGTGCAGATAACATATAAACTGAAGATTGTATATTAG AGACTTCACCTCTGTGTTTATCCTCTGATAAATTTTTGTGTTAATGTTGTATGAATTAACAGCACCAAGGGCCATTGCGA CTGCCACTTGAAGCTGATGATACTCTTTTGAGGGTGGACTTCGTAAGGGAGGTTGATGAATTGCTGCAAGAGGTTCGTTC GGAACTGGATGAAGAAGAGAGTGAACCAGGGTTCGATCCTCAATCTGTTGCAAGTAGATTGAAACAACAGGAGAAGCAAC AGACAATACGCCAAGTAGAAGCTCTGCTAGATTTAGCCATTAGTTTGAAATGGTAGCTATTTGGTCCCAGTTTGCATTTT GATTCACATGGGTTGAGTTATCTGACAGTTGAGTTTTGAGTAGGAAATAATATGCAGTGCGTTTACAAGCCAATTAGCTT CATGGTGTGGAAGGGTTTCTGTCTCCCTTCTAAGGATTTAAATTTTTTTTTTTTTTTTTGAAATAAACAGCCCTTCTAAG GATTTAAAAATTTAGTGCAAAAGAAAAGGACATACAAAATGTAGGCATGGCAATTTTGGGTGATTCTCTATTTTCTAAGG TACAGGCGTGTTAGGAAACTAGCTTTTGTTTGTTCATTTCATACATCTAAATGAACATCACTGGCTTAGCTAAGTTCAAA GACTTGGAAGTTAAATTTGAATTATAGTACATAAAATTTTATTAATGTTTGGATATAAATTATTCGAACCTGAATGTTGA CTTTGATTCGCTTCTTCTTTGCCCTCTTCATCTTCTTCGAGAGTAGTGGTCAACGATATGCACCAAAGGTACTCTGATAA AGACACTCTGATGCTTAAGTCAGCAATGTTAAGAAAGAAAATAAGAGTTAGGGTTGGCAATCTGATTTTGGAAAGGTGAT TTCGTTAAGGGTGCCTATAAAGACACTTTGATGCTTAAGTTAGCAAGGTTGAAAAC 

CDS sequence (LotjaGi5g1v0163600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGCTCCTCACTCTAACCTCCACTTCTCTCTTGTCAGTTCCTCTTTATTGTTCATCTTCTTCTTCATCCCTTGTAAC AACACTTCCTGCATCATCTCCCTCATCTTCTTCTTCTTCATATAAATGCACATCCGGCGCAGGTTTAAGGAGATGTGTTA GCAAGGAAAAGGAAGAAGATGTGCTTCTAGAAGGGATGCCAGATCACTACTATGATGATGAATGGCAAGCCAAGCAGCGG AAGAAGACCAGGGAGTTGCATCGAAAACGCAGACTGGAAGAAGAGGAAGAAGAAATGAAAATTGATGAGTATCGTGAAAT TGGCATGCGGCTGAAGGGATACCCAGAAGAAGATGTTAGAAAAGCACGGAAATTGGTTTCAAGCTTTATAAGAGCTGCTG AAGAAGTTGAAGAGAAAATTGAGGAAGCCGCTGAGAAAGGAGAACTTGATGAACTTGTCTTAATGGTCATATGGAATCGC CTTGATCTTGCCCGACGTGATGATGAAAAGGATGCAATTAGAAGTCTGGATCTGCTATACAGAAGGGTTGAGACTGAGAT TTTGAAACAAGAGGCTACCCCTGCGATGAGATTGCTCAATGACCTGTTGGTTATGTATGATGGCTTTAATTTAGAAGAGT GGCTGAGGAAATGCAAAAAGATCATGATTGATACATTTCCACGGGAGGATCCATTTAGTATTCTTGTTCCACCAGGTTTC GAGTCATTTGACTTAGATAAGCACCAAGGGCCATTGCGACTGCCACTTGAAGCTGATGATACTCTTTTGAGGGTGGACTT CGTAAGGGAGGTTGATGAATTGCTGCAAGAGGTTCGTTCGGAACTGGATGAAGAAGAGAGTGAACCAGGGTTCGATCCTC AATCTGTTGCAAGTAGATTGAAACAACAGGAGAAGCAACAGACAATACGCCAAGTAGAAGCTCTGCTAGATTTAGCCATT AGTTTGAAATGGTAG 

Protein sequence (LotjaGi5g1v0163600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKLLTLTSTSLLSVPLYCSSSSSSLVTTLPASSPSSSSSSYKCTSGAGLRRCVSKEKEEDVLLEGMPDHYYDDEWQAKQR KKTRELHRKRRLEEEEEEMKIDEYREIGMRLKGYPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELDELVLMVIWNR LDLARRDDEKDAIRSLDLLYRRVETEILKQEATPAMRLLNDLLVMYDGFNLEEWLRKCKKIMIDTFPREDPFSILVPPGF ESFDLDKHQGPLRLPLEADDTLLRVDFVREVDELLQEVRSELDEEESEPGFDPQSVASRLKQQEKQQTIRQVEALLDLAI SLKW 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_EUK 1 20 20 -
Phobius 1 18 18 -
SignalP_GRAM_POSITIVE 1 21 21 -
Phobius 1 2 2 -
Phobius 3 14 12 -
Phobius 15 18 4 -
PANTHER 15 324 310 1.5E-155
Phobius 19 324 306 -
Coils 126 146 21 -
Coils 268 288 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Plastid Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
Biological process Chloroplast organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast.
Biological process Chloroplast mRNA processing Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs.
Biological process Leaf development The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0163600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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