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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0163600 |
| Transcript ID | LotjaGi5g1v0163600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PALE CRESS protein (PAC); TAIR: AT2G48120.1 pale cress protein (PAC); Swiss-Prot: sp|Q39089|PAC_ARATH Protein PALE CRESS, chloroplastic; TrEMBL-Plants: tr|I1L816|I1L816_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:41906736..41912711) extracted from Lotus japonicus Gifu genome v1.2.
AACCCATTTTTGGTTATTATCATGTAAATTCACAATATACAAATCAGATAATCTTGGACGAGGATGTAGGTGATTGTGTC TCTGCTTTAGCCTAAATCCCTGCCTTCATCTTCGTTCTCTCAAACCTTGTCTTGGTAGTAACTAAGTATAGTTACAGTAC TATCATGTCACTAGAAAGAAAACCAGTGAGACCCTTCACTCGAACTTGAACTGAAAAGTACAAAGTTGACACCTCTTCAG TGTTCCAAGCAAGGGTTCAACTGGGTTTTTTTTCTGTGTAGATGAAGCTCCTCACTCTAACCTCCACTTCTCTCTTGTCA GTTCCTCTTTATTGTTCATCTTCTTCTTCATCCCTTGTAACAACACTTCCTGCATCATCTCCCTCATCTTCTTCTTCTTC ATATAAATGCACATCCGGCGCAGGTTAGTCCTCTCCACCACTCAATTGCTCTCAAAATTGATTTTTTCCTTACATGTGTT GTGGGTTTTGCTGGCAGGTTTAAGGAGATGTGTTAGCAAGGAAAAGGAAGAAGATGTGCTTCTAGAAGGGATGCCAGATC ACTACTATGATGATGTGTGTTTGCACCTTTCTCTAACTAAGACTTCATATGTGTTTTTCAGTTTTCACTCATTGCTTAAT CATGTTTGTTTATCAGAATTTGGCTCTTCTAGGCATTTTTTCATGCTCTTCTTAAAAGGGGTATCACTAAAGTCAATTCA TCCCCCTTTAATTGCCTTAATACTATCTAAGTATTTTGTGTTTGTTGTCAGCTTCTAACTACTCCTTCTTGAATGTAATT TGAATTTCCCTGATTATATCTCTGGAGGAAAAATGTATTAGCTTCACTGAAACATGACTTGCAATTTTGTTTTCAATTTT GAGTTCAATTGGTCAACTAGGCTGTGCTTCTACTTATAAGTTACTATCTTGTAAGAATATGTTTAGGGCAAATATCATCT TATCTTTGATGCCGGACATGATTCTGATTTTCAATTTTGTTTTCTGTTTGGTAACTGTGGTATCAAATTGTACGGTGGAT TAGCGCTCAGTTTTTGACTTGGTTGGTGACTATGAATTGTAAAAGCATAGTGAAATTTGGGGTGTCTCTATTGTGAAACC AAAATTTCTGGAAGGTTTTATTTGGATAGATTTCATTAACAGTCTCCAGTATAGGAATGGCAAGCCAAGCAGCGGAAGAA GACCAGGGAGTTGCATCGAAAACGCAGACTGGAAGAAGAGGAAGAAGAAATGAAAATTGATGAGTATCGTGAAATTGGCA TGCGGCTGAAGGGATACCCAGAAGAAGATGTTAGAAAAGCACGGAAATTGGTTTCAAGCTTTATAAGAGCTGCTGAAGAA GTTGAAGAGGTAATTTCTTGGTGCAGCAATATCCTATTCCAAATCATTATGCAGATAAAATATTTCATCATGAGAAAGTG TTCATTTTAACGTTATAAATACACCTATTGCATCTTAATTCCTCCGAAAATTTATATTGTATTTTGAACATCGGATAAAT GTTTAGGGTTCACCTTGATAAAATGTTTGCTATCCAATCTAAAGCTTGGAGTGCTTATTTCTTGACCATATAGAGGTCAT CTCTTTCATTCGGTGAGCATCAAGAATCTTATTGATAGGATTTCATATCACTTGGGTTGTTAGTGAGTTAGTCACGTGGG TTGTTTAGTTAGTCTTAAAGGGAAGCCTATAAATAAGAAAGGGTTAGAGAACATTAGTCATCTTTGTATTCAGTTAGGAA TTGGGTTTAGAGAGAGAAGTGGTTCTCTTTCTAGGGTTAGAGAGGGTGTTTGGTATCTCTCTCATGTATCTTTCCCCTAA TCCCCAATTGGGAATTAGGGTTCTATCAATAAACTACTGCTAATTTTCTGGTTTCTATCACTTATTGTAATGCAATTGAT ATCCTTGGTCATTCTAACTATAATATGGAGTCAAAGTGATAAGTGGACCAAACTTAAAACTGAAGCATATATAGGTAGGC GTTCTTAATGTTATAAATTTGATAACTGAGCTGCTAAGTTTTGATGCATCTGGCAACGAGTGGGAGAGAAAGCTAATTTT CTGGTGGTCATGATCACTAAAAGGAATTTTCTGCAGTTGTAACTAAAGGACATCATGATGTAGATGCCAAAAGAAAAAGT GTGACTAATGAAAAGCAAGAAGAAAAGGAAAGTAAGCGCATTATGCTATTGCTAACATGGTCTGCATCATGATAGCCATC CTAACTTGTTTTTGCATACAACTTTCCTCTTATTCAATTAGATATAGTTTGTAGTGATTGAAGTTGTTTATTTATGATCA ACTTGTGTGTCTTTTGTCCTAATAGGAAAGAGTGGTATTATAAAGAATTAAAAAAAATATTTTAATTCCTGATGGCATAA GCCTTTTTTTGCTTTCAGTTGTTTGTGTAGTATTGTGCCTGTTTTTGTCAATGATATTTTCTTTTTTGAAGTGTCACTAG AATTTAACGAAATTCAGAGTTACTGACTGACCATTTTTCTGGTAGAAAATTGAGGAAGCCGCTGAGAAAGGAGAACTTGA TGAACTTGTCTTAATGGTCATATGGAATCGCCTTGATCTTGCCCGACGTGATGTAAGTTGGTATTTTAGCTTCTGAAACA TTCTTGGTATATATATATGATAGGATCTGACTTAGAAGAAAGAAAGAAAGAAGAAGAACGGTGATTGATTGAACTCTGCT CTCAGAGAATGAGAGAAGCAGAGACGGAAAATATGAACAATTGCACCTGAAATTCGAGTGTCCAGATTCACTCCCCCCAA AATGATCCCAGTTATTCCCTAATCACTCTCTCCCTAACCTACTCCTCATATAGGAAGTAGTTAGTAATTCCCTACAACTG ACTAGTAACAGAATGACAACAGAAAAACTACTAACAACTAACAAGGGAATTATTCCCTGCTCCCCTGCTTACATCTCCTA GCATAGACCTTCCTTATTTGGGGTCGATCCCTATCAATATATCAGTTAACTTTTACACAGGTCACAGGGTATCATTTTTT GATGAAAAAGAAGTTGCATATAATTTTTTTTTTATCATTTTCCCATGACCTGATCCATTCGATTGTAAATGCTCTTCACA AAATTCGTAAGATAATCATTGGCACTGTGGAGGATTGTGTCTCCAATTATCGGATTTTTGGCAGCGTGATTAACACACTG GTGTTTTTCGGAAGTTGAATCAACTCCATTTTATACATAAAGATGATATACAAACATTTTGAAAATATTATAAAACTTTT GTTAGATAAAATTATAACTAAAACAATACTATCTTTTTAATTGTGCTAGAGTAAATGTCAACTTCTTCAGTGTCACAAAA GTAAATTGTTTGTATCATTGTATGGTATCAATGAAGGACTCTTTCAACTTCTTCAGTGAATTTTTGTTGCTGAGAGTAGC AGCTACTGATAGCCACTATGTTGTTCTTTACAATAAACTTCTATCATGTTGCAATTTTTTGATATGATAGCATTATAATT TTCTAAGAAATTTCAGTATTCTTTTAAAAACATATATGACTCATGTAGTTGACAGTTAACTGTCAAAAGGAAAAAAATAT CATATAATCCTTTGATTTAGTGGGTGAAAGAGTGGATAAACATTATTTAATAGATGTTTTGGTCCCAATGGATTTCAGAC CAACTGAAAATTTTCATCCGCTTTGCATTCCTCATTCAGGCTGTCAACTGATCACAGCCCTCCTACTCTATCATCTGGCT GGCATCATACCGATATTGGGATCAACACATTATTAAGCCAAATAATTTATTATCTTTATAGGCTTTCTAAGAAATCAAGA ACTGAGAATTGTAGAAGATAGATGAATCTTCAATCAATGAATCAATGTAATGAATGAATCTATTACAGTGAAACACTATA TATAGTGTGATTAACTTCTAACTATCACAATTAGATATAACTAACTTGTCCAGCTGTAATGCCAGCTCAGCTAACCAAAA CAACAAACCAAACTAACTAACTATTATTACACTGGAGTCCTTGAACTATTTCTGCTTATCACTTTAGTCCTTATTCTTTT ACAGGCTTGTTAAGCAAAACGTGATTAATTATGTTCCTTCTTTTGTATCATCCTATCTTATATATCATTATGATATTTTG AAAGCGATTGACCGAATTTAATCTTAGAATCAGTCCAGTGTCTATTTCTTAAGAAGTTTGAATAATTTTTTTCATCATCT TACTCTCACTGTCTTGTTTTCTAAATTAATTTATCACCTCTTTACAGGATGAAAAGGATGCAATTAGAAGTCTGGATCTG CTATACAGAAGGGTTGAGGTAATTAACTGCTCCGCTTTCTCTTGTGACTATTACTATCACATACTACACATATTACCTCA CCTTAGTACTCCTTTAGTTGGTTCTGAGTCTTATTTCCCTGTTCTTGATTGTAGACTGAGATTTTGAAACAAGAGGCTAC CCCTGCGATGAGATTGCTCAATGACCTGTTGGTTATGTATGATGGCTTTAATTTAGAAGAGTGGCTGAGGAAATGCAAAA AGATCATGATTGATACATTTCCACGGGAGGATCCATTTAGTATTCTTGTTCCACCAGGTTTCGAGTCATTTGACTTAGAT AAGGTAAGCTGCAGCTACAGATTAAATGGCTTAGACTTTATTCATGTGATGTCTGGTTGCTCCTATAAGAATTTTCCCCC TCACACGATAATAGCTGAAGCTGTTTCTCATCATATATATATGGTTGAAGGGGATTCTATACTGCAAATGAAAGTATCAA TACCACTTATAATTTTAACCAAATCTATATTTAAATAACCAAATGTTGTCTACTTCACCATATTAAATAAAGGGATTTTA TCCAATTGATTATGTTTGACAAAAATAAGTTCACGATGATAATTAAAATCAACCATTGATATAAGTTAGTTGAACTTGAT TCAAGATTATTTGCTTGTACATAAGTTTGGTTAAAAGTGAGGTGGTGCAGATAACATATAAACTGAAGATTGTATATTAG AGACTTCACCTCTGTGTTTATCCTCTGATAAATTTTTGTGTTAATGTTGTATGAATTAACAGCACCAAGGGCCATTGCGA CTGCCACTTGAAGCTGATGATACTCTTTTGAGGGTGGACTTCGTAAGGGAGGTTGATGAATTGCTGCAAGAGGTTCGTTC GGAACTGGATGAAGAAGAGAGTGAACCAGGGTTCGATCCTCAATCTGTTGCAAGTAGATTGAAACAACAGGAGAAGCAAC AGACAATACGCCAAGTAGAAGCTCTGCTAGATTTAGCCATTAGTTTGAAATGGTAGCTATTTGGTCCCAGTTTGCATTTT GATTCACATGGGTTGAGTTATCTGACAGTTGAGTTTTGAGTAGGAAATAATATGCAGTGCGTTTACAAGCCAATTAGCTT CATGGTGTGGAAGGGTTTCTGTCTCCCTTCTAAGGATTTAAATTTTTTTTTTTTTTTTTGAAATAAACAGCCCTTCTAAG GATTTAAAAATTTAGTGCAAAAGAAAAGGACATACAAAATGTAGGCATGGCAATTTTGGGTGATTCTCTATTTTCTAAGG TACAGGCGTGTTAGGAAACTAGCTTTTGTTTGTTCATTTCATACATCTAAATGAACATCACTGGCTTAGCTAAGTTCAAA GACTTGGAAGTTAAATTTGAATTATAGTACATAAAATTTTATTAATGTTTGGATATAAATTATTCGAACCTGAATGTTGA CTTTGATTCGCTTCTTCTTTGCCCTCTTCATCTTCTTCGAGAGTAGTGGTCAACGATATGCACCAAAGGTACTCTGATAA AGACACTCTGATGCTTAAGTCAGCAATGTTAAGAAAGAAAATAAGAGTTAGGGTTGGCAATCTGATTTTGGAAAGGTGAT TTCGTTAAGGGTGCCTATAAAGACACTTTGATGCTTAAGTTAGCAAGGTTGAAAAC
CDS sequence (LotjaGi5g1v0163600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCCTCACTCTAACCTCCACTTCTCTCTTGTCAGTTCCTCTTTATTGTTCATCTTCTTCTTCATCCCTTGTAAC AACACTTCCTGCATCATCTCCCTCATCTTCTTCTTCTTCATATAAATGCACATCCGGCGCAGGTTTAAGGAGATGTGTTA GCAAGGAAAAGGAAGAAGATGTGCTTCTAGAAGGGATGCCAGATCACTACTATGATGATGAATGGCAAGCCAAGCAGCGG AAGAAGACCAGGGAGTTGCATCGAAAACGCAGACTGGAAGAAGAGGAAGAAGAAATGAAAATTGATGAGTATCGTGAAAT TGGCATGCGGCTGAAGGGATACCCAGAAGAAGATGTTAGAAAAGCACGGAAATTGGTTTCAAGCTTTATAAGAGCTGCTG AAGAAGTTGAAGAGAAAATTGAGGAAGCCGCTGAGAAAGGAGAACTTGATGAACTTGTCTTAATGGTCATATGGAATCGC CTTGATCTTGCCCGACGTGATGATGAAAAGGATGCAATTAGAAGTCTGGATCTGCTATACAGAAGGGTTGAGACTGAGAT TTTGAAACAAGAGGCTACCCCTGCGATGAGATTGCTCAATGACCTGTTGGTTATGTATGATGGCTTTAATTTAGAAGAGT GGCTGAGGAAATGCAAAAAGATCATGATTGATACATTTCCACGGGAGGATCCATTTAGTATTCTTGTTCCACCAGGTTTC GAGTCATTTGACTTAGATAAGCACCAAGGGCCATTGCGACTGCCACTTGAAGCTGATGATACTCTTTTGAGGGTGGACTT CGTAAGGGAGGTTGATGAATTGCTGCAAGAGGTTCGTTCGGAACTGGATGAAGAAGAGAGTGAACCAGGGTTCGATCCTC AATCTGTTGCAAGTAGATTGAAACAACAGGAGAAGCAACAGACAATACGCCAAGTAGAAGCTCTGCTAGATTTAGCCATT AGTTTGAAATGGTAG
Protein sequence (LotjaGi5g1v0163600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLTLTSTSLLSVPLYCSSSSSSLVTTLPASSPSSSSSSYKCTSGAGLRRCVSKEKEEDVLLEGMPDHYYDDEWQAKQR KKTRELHRKRRLEEEEEEMKIDEYREIGMRLKGYPEEDVRKARKLVSSFIRAAEEVEEKIEEAAEKGELDELVLMVIWNR LDLARRDDEKDAIRSLDLLYRRVETEILKQEATPAMRLLNDLLVMYDGFNLEEWLRKCKKIMIDTFPREDPFSILVPPGF ESFDLDKHQGPLRLPLEADDTLLRVDFVREVDELLQEVRSELDEEESEPGFDPQSVASRLKQQEKQQTIRQVEALLDLAI SLKW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| PANTHER | 15 | 324 | 310 | 1.5E-155 | ||
| Phobius | 19 | 324 | 306 | - | – | |
| Coils | 126 | 146 | 21 | - | – | |
| Coils | 268 | 288 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Plastid | Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. | ||
| Biological process | Chloroplast organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. | ||
| Biological process | Chloroplast mRNA processing | Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs. | ||
| Biological process | Leaf development | The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure. |
Expression pattern of LotjaGi5g1v0163600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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