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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0164300 |
| Transcript ID | LotjaGi5g1v0164300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA dimethylallyltransferase; TAIR: AT3G63110.1 isopentenyltransferase 3; Swiss-Prot: sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic; TrEMBL-Plants: tr|Q1W5W3|Q1W5W3_LOTJA Adenylate isopentenyltransferase; Found in the gene: LotjaGi5g1v0164300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42040706..42042977) extracted from Lotus japonicus Gifu genome v1.2.
TATTCAACCTTCTTCTATACAGATTCATTTCCAGTACGGATTATATTTAATTTTTCTGATGTTTTATCGTACCTGTAGTA AAGTATATATATAAGACTAATTCAAAGATGTCCAATATACATATATATAACATATCAGTATAAATTAAAAAATTTCTCTT TATATAAAGGAAGAGAATAATTACCCTATCCTGTGAGACAGGTTGAGTGGAAAAGCTGTTCTAATCACTAAATGCAACCA AGCGCCAAATGGAAAACGTATATTTATATTTATATACATATAAATACACACACACACACAAACTCATATACATACAAAAT TCGAAAGAAACAAAAATTAGGGAATAATGAGAAAGACCTTATCATGTATATATATTCTTTATGCAATTTGCCGCACTTTG CTACACAATCCACCAAAGGCACAGAACCTACTGTGCCCACTTCATGAAGAGCTTCTCTGAGCCTGCACTGGACCATTATG GTTAATTTTCTATATAGCATAAAGCACAAAAATATATATATTGACAGAATATTTGACATGACCACTAGCTTCCATTCTAT TTGACTATCAATAATTCCTACACTAACTTTTTATTCATAAACAGAGAGGCAAGCAGTGTCAGTTCTTGACCTCTGTCCTC AGCCTACTCTATAAATATTCAACAAACTTCTCCCTCATTCTCTCAATTGAGTTCTCATATGAGCTTTCAAAGCTTCTTAC ACTCCCATCTTCCAGGCCTAGAAGCACAATTGAACTCAACCTTATTAGGTTCAGTTCAATCCTCACTCTGCTTCTCCTAA TGATAGCTTGGCACTACTAAATAAACACCACCACATTATCACACCCAAAAGGCCAAAATTCAACCTTAGCCTAAACCTTA GCCCTTCATAATCACCAAAAAATTCTGCAACATAAAGATCACCTTCCCATTTAAATAGTATTAGCTCAAATAACTGACAT CTTTACCTGTCTACTTCCTAATCAAAATTCTATAATTTCTCACTCTTTTTCATAAATTGGGTTGATCAGATACCAATTTT GCAATTCACCATGTCCATCTCAATGCTAATGTGCAGACTAAGACAACCCTTAATAAACGTTCCCTGCAGTGGCAAAAAAA TGAGCATGAGGCAGATTCAAAAGGAGAAGGTAGTGTTGGTGATGGGAGCTACAGGGACAGGAAAGTCAAAGCTCTCCATT GACCTCGCCACCTGTTTCCCCTCAGAAATCATCAACTCCGACAAGATTCAAATCTACGACGGCCTCGACATCGTCACCAA CAAAATCTCCAAGGAAGAACAACGTGGAATCCCCCACCACCTCCTCGGAACTCAAAACCCTAACACAGACTTCACCGCCG GCGATTTCCGTGACTGTTCCACCGCCGCCATTGACGCAATCACAAGCCGCGACCACCTTCCGATCATCGCCGGAGGTTCG AACTCCTACCTGGAGGCGTTAATCGACGACGACGACTACAAATTCCGATCGAGGTACGACTTCTGCTGCCTCTGGGTCGA CGTGGCAATGCCGGTGCTGGACTCATACGTGGCGGCGCGTGTGGATCAGATGCTCCGGAGCGGAATGGTGGAGGAGCTGA GACCGTTTTTCAACGCGAACGGCGACTACTCGAGAGGAATCAGAAGAGCGATTGGGGTTCCTGAATTCGACGAGTATTTC CGGCGGGAAGGGTTCGCCGATGAGGAAACGAGGAAATTGTTACTGGAGCGAGCGGTGAGGGAGATGAAGGTGAACACGTG CAAGCTCGCGAGGAGGCAATTGGGGAAGATTCAGAGGCTGAGGAATGTGAAGAGGTGGGAGATTCACCGTGTTGATGCGA CGCCGGTGTTTCGGAAGCGTGGGGAGGAGGCTGATGAGGCGTGGCGGAAGGTGGTGGCAGAGCCTAGTGCTATGATCGTA GCGCAGTTTCTGTATAAGGCAAAGAGTGATGTGAATGTTGTTTCTGGCGGTTTCAGAGTGCCGGCGGGTTCAACGGAGAG TGTTATGGCGGCGGCGACGTGTTAGTTATGTTCATAGAGGGTGGTGGTTGCAATTTTGTTCAGCCCAGAAATAATAATTA TAAAATTGATAATAAGGAAGAATTTGCAGTTGATTTTAACAAACAATTTTTACCTCAACTCTATCTCTATCATATATTGT AGGAGTATCAAAAAAAAAATATTCATATATTGTAGGTCAGTTTCAAAAAAAAAAATTTGTAGGTACTCTGGTAATAATAG AAAATGATCAGTAAACAAACATTAAAAAAAAC
CDS sequence (LotjaGi5g1v0164300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATCTCAATGCTAATGTGCAGACTAAGACAACCCTTAATAAACGTTCCCTGCAGTGGCAAAAAAATGAGCATGAG GCAGATTCAAAAGGAGAAGGTAGTGTTGGTGATGGGAGCTACAGGGACAGGAAAGTCAAAGCTCTCCATTGACCTCGCCA CCTGTTTCCCCTCAGAAATCATCAACTCCGACAAGATTCAAATCTACGACGGCCTCGACATCGTCACCAACAAAATCTCC AAGGAAGAACAACGTGGAATCCCCCACCACCTCCTCGGAACTCAAAACCCTAACACAGACTTCACCGCCGGCGATTTCCG TGACTGTTCCACCGCCGCCATTGACGCAATCACAAGCCGCGACCACCTTCCGATCATCGCCGGAGGTTCGAACTCCTACC TGGAGGCGTTAATCGACGACGACGACTACAAATTCCGATCGAGGTACGACTTCTGCTGCCTCTGGGTCGACGTGGCAATG CCGGTGCTGGACTCATACGTGGCGGCGCGTGTGGATCAGATGCTCCGGAGCGGAATGGTGGAGGAGCTGAGACCGTTTTT CAACGCGAACGGCGACTACTCGAGAGGAATCAGAAGAGCGATTGGGGTTCCTGAATTCGACGAGTATTTCCGGCGGGAAG GGTTCGCCGATGAGGAAACGAGGAAATTGTTACTGGAGCGAGCGGTGAGGGAGATGAAGGTGAACACGTGCAAGCTCGCG AGGAGGCAATTGGGGAAGATTCAGAGGCTGAGGAATGTGAAGAGGTGGGAGATTCACCGTGTTGATGCGACGCCGGTGTT TCGGAAGCGTGGGGAGGAGGCTGATGAGGCGTGGCGGAAGGTGGTGGCAGAGCCTAGTGCTATGATCGTAGCGCAGTTTC TGTATAAGGCAAAGAGTGATGTGAATGTTGTTTCTGGCGGTTTCAGAGTGCCGGCGGGTTCAACGGAGAGTGTTATGGCG GCGGCGACGTGTTAG
Protein sequence (LotjaGi5g1v0164300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSISMLMCRLRQPLINVPCSGKKMSMRQIQKEKVVLVMGATGTGKSKLSIDLATCFPSEIINSDKIQIYDGLDIVTNKIS KEEQRGIPHHLLGTQNPNTDFTAGDFRDCSTAAIDAITSRDHLPIIAGGSNSYLEALIDDDDYKFRSRYDFCCLWVDVAM PVLDSYVAARVDQMLRSGMVEELRPFFNANGDYSRGIRRAIGVPEFDEYFRREGFADEETRKLLLERAVREMKVNTCKLA RRQLGKIQRLRNVKRWEIHRVDATPVFRKRGEEADEAWRKVVAEPSAMIVAQFLYKAKSDVNVVSGGFRVPAGSTESVMA AATC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 312 | 290 | 3.0E-160 | – | |
| PANTHER | 23 | 312 | 290 | 3.0E-160 | ||
| Gene3D | 31 | 294 | 264 | 1.0E-108 | – | |
| SUPERFAMILY | 34 | 142 | 109 | 1.48E-10 | ||
| Pfam | 67 | 140 | 74 | 8.4E-21 | ||
| Pfam | 150 | 244 | 95 | 2.7E-11 | ||
| Gene3D | 160 | 259 | 100 | 1.0E-108 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. |
Expression pattern of LotjaGi5g1v0164300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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