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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0166300 |
| Transcript ID | LotjaGi5g1v0166300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT4G02820.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial; TrEMBL-Plants: tr|A0A151SL34|A0A151SL34_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0166300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42452502..42455182) extracted from Lotus japonicus Gifu genome v1.2.
GAACTCAATTCCAATCCAATGATAATGGCGCAGCTGAGTAAAAAGGCAATGTTGCTCCGCTCCATCGGCAGCTACCTGGC CGTCTCCCGCCACTTTTCGGCGCAGGCCGCACGAAAAGGCACTCCCGCTGCCTCTGCCGCCGCCGCCACCTCCACCGGAG GTCGAGACACACTGTGTCGGAGGCTTCTGAGCCTTGTCTTCCCCAAACGCAGCGCCGTCATCGCCATCAACAAATGGGTG GAACAGGGTCACCCGCTCCCCCGCAAGTACGAGCTCAATCGCATCGTTCGTGAGCTCCGCAAGACGAAGTCTTACAAACA CGCACTAGAGGTTGGTTTCTGCGTTTTCTCATCTTCATAGTGTTTAATCATAGTTGCTTCTGTCATAGATTGATACTTTG GAGGATTTGAATTCTGGGTTTCGTTTATTATCAACTCGAAATTGATGTTTTATGCAGTGAGATATGTTTTTTTATAAATT TTTTGTATTAGAGTTGTTTTGGTTTCATTGATTGTGAAAATGATTGAGGAGAATTGAAACTGAGAATTCACCTGAAGATA CATATTGGCTTTGCTTATGGCCCTCTGAAATTTAAGATGTTGGTTATATTTGGTTCGAAACAATCAGGTTGCAAGAACTG GAATCTGTTATACATTGTTCGATGCGTAATTGGAGTGATTTTTTTTGTTTTTAATTGAAAATGCAGGTCTGCGAATGGAT GACTTTGCAGGAACATATCAAGCTAGTGCCAGGAGACTATGCTGTCCACTTGGACTTGATAACTAAAGTTCGGGGTTTAA GTAGTGCAGAAAAATTCTTTGAGGATCTTCCTGACAAAATGAGAGGCCAGCAAACCTGCACCGCGCTTCTCCACACTTAT GTCCAGAATAATTTGGTTGACAAAGCTGAGGCCCTCATGATGAAAATGTCAGAGAGTGGTTTCTTAGGATGTCCTCTTCC TTATAATCACATGATATCTCTGCACATTTCGAATGGGAAGCTAGAAAAAGTTCCTAAACTTATTGATGAACTAAAGATGA ACACCTCTCCAGATGTTGTTACCTACAATTTATGGTTAACTTTCTGTGCTACGCAGAATGATATTGAAACTGCAGAAAGA TTACTACTTGAGTTAAAGAAGGCAAAATTGGAACCAGACTGGGTAACTTATAGTACACTGACCAATTTGTACATAAAAAA TGCTTGCATTGAGAAAGCTGGTTCTACTTTGAAAGAGATGGAGCGTCTAACCTCGCGGAACACTCGAGTTGCTTATTCCT CTCTCCTTAGTTTGCATACAAACATGGGGAATAAGGATGAAGTCAATTGGATATGGAAGAAAATGCAGGCTTCCTTTCGC AAAATGAGTGATAAGGAATACATTTGCATGATATCATCACTGGTGAAGCTTGGAGACTTTGCTGGAGCTGAGAACCTCTA TAAGGAGTGGGAGTCTGTTTCCGGGACCAAAGATGTCAGAGTTTCAAATATTCTTCTTGCTTCATACATCAATCAAGGTC AGGCGGAAGTAGCTGAAGATTTTTGTAATCAGATAGCGGAAAAGGGCATCACTCCTAGTTACACTACATGGGAGCTGCTT ACATGGGGGTATTTGGGGAAAAAAGATGTGGTAAAATTTCTGGATTATTTTAAGAAAGCTATTTCTAGTGTGAAAAAATG GAGTCCCGATCAAAAGTTAGTAGAAGAAGCATTCAAAATCATTGAGGAGCAAGCTCATATTGAAGGAGCAGAACAGTTGT TGGTTATACTTCGGGATGCCAGCTATGTGAATACAAGTATATACAACCTACTTCTCAAAACTTATGCAGCAGCTGGTAAA ATGCCTCTCGTTGTTGCTGAGAGGATGAAAAAGGACAACGTTCAGTTGGATGAAGAGACTCACAGGCTCTTGGATCTAAC CAGTAAAATGTGTGTGAGTGATGTTTCAGGTATTCTGTCCTAAGCGCCCAATGAAGAAGCAGTCTTAAGATTAAGTGGGA GTCTCGAACATTTATTGGCTGCAATTTCTTGTAGTCTTCCTCTCATTGGTGAATATAACTATCTTGTTGTTCATCTTTGT GGATGTAAAATTTGGTAATGATACCAAATTTGAAATCAGAAATCAGACCTGGATTTTGGAGGCAGAGTCAGTTGATTTTT GGTTGTCCCAACCCATCTAGGATGAGAATTCTGTTGACCTAAATTTTGACTCTTGAGTCCAAAAGTATACGCGGTTTAGG TCTTTCTTTTCCTGATTTGGTAAGTCATTTCTTCTATTTATTTTGGATGGACATACCCCAGAAACTTAACCTTCATTTAC TCTATTCTACCAACCATTATCCGAGCATTGTGAGTTTTGACCGATTTCAAAATTCAAGTTATGTATTAACTTTCTGATGA TATGGATCTCATTAATCAGACTGTGACGTGCTTCCCAAAGATAATGATTTTGTTTGATTAAGTAAAACATTTTGTTAAAA CTTGATGTATAGGTATTCACATTAAAAGAGCATGAAGGAAACTCCATCTCCCCAACTTCATGGGAAAAGACAATGAGTGA AACTTGGTGTATAGTTATCATTAGTTATTAATGCATCTTACATACTCCCTCCGTTCCTGATCTTTTGTTGTTTAAGGTTA TGCACATTGTTTAAGAGTGCAATCATTGATATATTTGTTGA
CDS sequence (LotjaGi5g1v0166300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAATGGCGCAGCTGAGTAAAAAGGCAATGTTGCTCCGCTCCATCGGCAGCTACCTGGCCGTCTCCCGCCACTTTTC GGCGCAGGCCGCACGAAAAGGCACTCCCGCTGCCTCTGCCGCCGCCGCCACCTCCACCGGAGGTCGAGACACACTGTGTC GGAGGCTTCTGAGCCTTGTCTTCCCCAAACGCAGCGCCGTCATCGCCATCAACAAATGGGTGGAACAGGGTCACCCGCTC CCCCGCAAGTACGAGCTCAATCGCATCGTTCGTGAGCTCCGCAAGACGAAGTCTTACAAACACGCACTAGAGGTCTGCGA ATGGATGACTTTGCAGGAACATATCAAGCTAGTGCCAGGAGACTATGCTGTCCACTTGGACTTGATAACTAAAGTTCGGG GTTTAAGTAGTGCAGAAAAATTCTTTGAGGATCTTCCTGACAAAATGAGAGGCCAGCAAACCTGCACCGCGCTTCTCCAC ACTTATGTCCAGAATAATTTGGTTGACAAAGCTGAGGCCCTCATGATGAAAATGTCAGAGAGTGGTTTCTTAGGATGTCC TCTTCCTTATAATCACATGATATCTCTGCACATTTCGAATGGGAAGCTAGAAAAAGTTCCTAAACTTATTGATGAACTAA AGATGAACACCTCTCCAGATGTTGTTACCTACAATTTATGGTTAACTTTCTGTGCTACGCAGAATGATATTGAAACTGCA GAAAGATTACTACTTGAGTTAAAGAAGGCAAAATTGGAACCAGACTGGGTAACTTATAGTACACTGACCAATTTGTACAT AAAAAATGCTTGCATTGAGAAAGCTGGTTCTACTTTGAAAGAGATGGAGCGTCTAACCTCGCGGAACACTCGAGTTGCTT ATTCCTCTCTCCTTAGTTTGCATACAAACATGGGGAATAAGGATGAAGTCAATTGGATATGGAAGAAAATGCAGGCTTCC TTTCGCAAAATGAGTGATAAGGAATACATTTGCATGATATCATCACTGGTGAAGCTTGGAGACTTTGCTGGAGCTGAGAA CCTCTATAAGGAGTGGGAGTCTGTTTCCGGGACCAAAGATGTCAGAGTTTCAAATATTCTTCTTGCTTCATACATCAATC AAGGTCAGGCGGAAGTAGCTGAAGATTTTTGTAATCAGATAGCGGAAAAGGGCATCACTCCTAGTTACACTACATGGGAG CTGCTTACATGGGGGTATTTGGGGAAAAAAGATGTGGTAAAATTTCTGGATTATTTTAAGAAAGCTATTTCTAGTGTGAA AAAATGGAGTCCCGATCAAAAGTTAGTAGAAGAAGCATTCAAAATCATTGAGGAGCAAGCTCATATTGAAGGAGCAGAAC AGTTGTTGGTTATACTTCGGGATGCCAGCTATGTGAATACAAGTATATACAACCTACTTCTCAAAACTTATGCAGCAGCT GGTAAAATGCCTCTCGTTGTTGCTGAGAGGATGAAAAAGGACAACGTTCAGTTGGATGAAGAGACTCACAGGCTCTTGGA TCTAACCAGTAAAATGTGTGTGAGTGATGTTTCAGGTATTCTGTCCTAA
Protein sequence (LotjaGi5g1v0166300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIMAQLSKKAMLLRSIGSYLAVSRHFSAQAARKGTPAASAAAATSTGGRDTLCRRLLSLVFPKRSAVIAINKWVEQGHPL PRKYELNRIVRELRKTKSYKHALEVCEWMTLQEHIKLVPGDYAVHLDLITKVRGLSSAEKFFEDLPDKMRGQQTCTALLH TYVQNNLVDKAEALMMKMSESGFLGCPLPYNHMISLHISNGKLEKVPKLIDELKMNTSPDVVTYNLWLTFCATQNDIETA ERLLLELKKAKLEPDWVTYSTLTNLYIKNACIEKAGSTLKEMERLTSRNTRVAYSSLLSLHTNMGNKDEVNWIWKKMQAS FRKMSDKEYICMISSLVKLGDFAGAENLYKEWESVSGTKDVRVSNILLASYINQGQAEVAEDFCNQIAEKGITPSYTTWE LLTWGYLGKKDVVKFLDYFKKAISSVKKWSPDQKLVEEAFKIIEEQAHIEGAEQLLVILRDASYVNTSIYNLLLKTYAAA GKMPLVVAERMKKDNVQLDEETHRLLDLTSKMCVSDVSGILS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 22 | 11 | - | – | |
| PANTHER | 18 | 517 | 500 | 1.0E-255 | – | |
| PANTHER | 18 | 517 | 500 | 1.0E-255 | – | |
| Phobius | 23 | 40 | 18 | - | – | |
| Phobius | 41 | 522 | 482 | - | – | |
| ProSiteProfiles | 151 | 185 | 35 | 8.451 | ||
| TIGRFAM | 154 | 183 | 30 | 1.5E-4 | ||
| Pfam | 154 | 183 | 30 | 0.0016 | ||
| ProSiteProfiles | 186 | 216 | 31 | 6.16 | ||
| Gene3D | 189 | 289 | 101 | 9.0E-16 | ||
| Pfam | 190 | 215 | 26 | 0.022 | ||
| Pfam | 219 | 264 | 46 | 1.7E-9 | ||
| ProSiteProfiles | 220 | 254 | 35 | 9.493 | ||
| TIGRFAM | 222 | 256 | 35 | 4.8E-4 | ||
| ProSiteProfiles | 255 | 285 | 31 | 7.3 | ||
| ProSiteProfiles | 290 | 320 | 31 | 7.103 | ||
| Gene3D | 290 | 457 | 168 | 7.7E-19 | ||
| Pfam | 292 | 318 | 27 | 0.3 | ||
| ProSiteProfiles | 325 | 355 | 31 | 6.292 | ||
| Pfam | 329 | 353 | 25 | 0.11 | ||
| ProSiteProfiles | 360 | 394 | 35 | 8.934 | ||
| ProSiteProfiles | 466 | 502 | 37 | 5.283 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0166300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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