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LotjaGi5g1v0173400.1

Overview

Field Value
Gene ID LotjaGi5g1v0173400
Transcript ID LotjaGi5g1v0173400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein; TAIR: AT3G63370.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370, chloroplastic; TrEMBL-Plants: tr|A0A0R0KWW8|A0A0R0KWW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0173400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:44309548..44314622) extracted from Lotus japonicus Gifu genome v1.2.

CTAAAATAAAAAAAAATGACAAAACCAATTCGCCCCTATTTTATATGGGTACTTCAAACATATTTAATCCTTTATTTATA TAAGTATGATACATCATTTTATTTCTTAACCAATTTCTTATGGTTGTTTTGCTTTTGCATGATCCATTGCATGAGTTCTT CGTTTAGGTGCGGTGCATCGCAGCTTCGCCCACGCACCTCCCACCCAACAATGGCAACTTCAGTCCTACACAGTCACCAC CTCATCTCCCAAACACTTCGCCCAAACCATGTCTCTTCCTTTCCCCTCAAAGACGCTTTCCAATCCTTCTCTGACCCTTC CGCCACAACCCGCGTCCCTCTCCAACACGCTCTTGACCTCTGCGCCGCCGAGAAAGCTCTTCCACAAGGGCAACAGTTGC ATGCCCATTTCGTCAAAACCCATGGCTTGCATGGTTCTATGTTCCTGGACACTAAGCTTGTGCATATGTATGGAAAATGT GGCTCGTTTCTTGATGCAGAGAAGGTGTTTGATAAAATGACTGAGAGAACTATTTTTTCATGGAATGCCATGATGGGTGC GTTTGTGTCAAGCGGTAGATATCTTGGCGCGCTTGAGTTGTACAAGGAAATGCGGGTTCTGGATGTGGGGCTAGATGCTT TTACTTTTCCCTGTGTGCTTAAAGCTTGTGGTGCTCTTGGTGAGAACCGTTTGGGGGCTGAAATTCATGGTGTGGCGGTT AAGTGTGGATATGGTGCGTTTGTTTTTGTTTGTAACGCACTCATTGCTATGTATGCAAAATGTGGTGATCTTGGTGAGGC TAGGATTTTGTTTGACAAGGTTATGATGGGGAAAGAGGACAGTGTATCGTGGAATTCTATTATTTCAGCACATGTAGCGG AAGGCCAGTGCTTAGAGGCACTGTCGCTGTTTAGAAAAATGCAGGAGGTTGGCGTTGAGAGTAATACTTACACTTTCGTT GCAGCTCTTCAAGCTTGTGAAGATCCAACCTTTATTAAACTGGGTATGGAGATTCATGCCGCCGTCTTGAAATCGAACCA TTTTGCTGATATATATGTTGCCAATGCTTTGATTGGTATGTATGCAAAATGTGGTCAAATGGAGGATGCTGAACGAGTTT TTAAAAGTATGCCTTTCAAAGATTTTATATCGTGGAATACGTTGCTGTCAGGTCTAGTCCAAAATGATCTATATGACGAT GCGCTAAACCACTTCCGGGATATGCAGAATTCTGGTCAAAAGCCTGACCAGGTGTCGGTACTAAACATAATTGCAGCATC AGGCAGATCAGGAAATTTATTGATTGGCATGGAAGCCCATGCCTATGCAATAAGAAATGGAATAGATTATAATATGCAGA TTGGTAACACCCTGATCGATATGTACACTAAGTGTTGTAGAGTAAAATATATGGGTCATGTTTTTGACAATATGCCTGAA AAGGACATGATTTCTTGGACAACGGTTATTGCTGGCTATGCACAGAATGGATATCATCTGGAAGCTTTGAGTTTGTTGCG GAAGGTTCAATTAGAAGGGATGGATGTTGATCCTATGATGATTGGAAGCATTTTCCTCGCTTGTAGTGGGTTGAAATCTG AAAAAATTATCAAAGAAATTCATGGTTATGTTTTGAAAAGAGATTTAGCTGATACTTTGCTACAAAATGCCATTGTCAAT GTATATGGAGAGGTTGGGCACACTGAGTATGCAAGGCGTGTGTTTGAATCTATTAAATCCAAAGATATAGTGTCTTGGAC AAGTATGATTACTTGTTGTGTTCATAACTCACTTGCAATTGAGGCTCTTGAACTTTTCTGCTCTCTTATAAAAACTAATA TTCAACCTGATTCTATAGCTCTTGTCAGTGCACTCTCCGTGGCTGCTAGTTTATCTTCATTGAAGAAAGGGAAGGAGATT CACGGATTTCTGATTAGGAAGGGTTTCTTCTTAGAGGGACCAATTGCTAACTCCCTGGTGGACATGTATGCTCGCTGTGG AACTGTGGAGAACACAAGAAAGATATTTAATTCTGTAAAACAGAAAGATCTAATTTTATGGACTGCTATGATTAATGCAA ATGGAATGCATGGATGTGGAAATGAGGCCATTGTTTTATTCAAGAAAATGACTGACGAAAATGTTATTCCTGATCATATA ACCTTCTTGGCTTTATTATATGCATGCAGCCATTCAGGATTGATAGTTGAAGGTAAGAGGTTTTTTCAAATCATGAAACA TGAATATCAGTTGGAGCCCTGGCCTGAGCATTATGCCTGCCTGGTAGATCTCCTTGGTCGATCCAATTCCCTGGAAGAGG CTTACCATTTTGTGAGAAACATGCCTATTGAACCTTCTGCTGAAGTCTGGTGTGCTCTTCTTGGGGCTTGCCGTATTCAT TCTAATAAAGAATTAGGAGAGCTTGCTGCAAAGGAGCTCTTACAATCAAATACAGAGAAACCAGGAAACTATGTACTAAT ATCAAACACCTTTGCAGCAGATGGAAGATGGAATGATGTTGAAGAAGTTAGGTTGAGAATGAAGGGAAATGGGTTGAAGA AGAAACCAGGATGCAGTTGGATTGAGGTTGAGAATAAGATTCACACCTTCGTGGCAAGGGACAAGTCTCATCCAAAGTCT GATGACATTTATCTAAAATTGGCCCAGCTTACAAAACTTATGGAGGAAAAAGGAGGCTATAGGGCCCAAACTAAATTTGT ATTCCACAATGTTGATGAGGAGGAGAAAATACAGATGCTATATGGACATAGTGAAAGGTTGGCACTTGGGTATGGTCTGC TTGTTACCCCAAAGGGTAGTTCTATTCGGATCATAAAAAACCTTCGAATTTGTGATGATTGTCATGCATTCTTTAAGATA GCATCTGAAGTATCTCAACGAGCCCTTGTTGTAAGGGATGCCAACAGATTCCATCATTTTGAACGAGGACTCTGTTCATG TGGAGATTTATGGTGAACACCTTGATAATTATGCAAAAATAGATTGTAGCACACTTATCCAGTTCCTTCCAGATTCTGGC GGTTGTTAAAATTGCTCTTCATATTTTTATTGTCTCTTTATGATATCTTAATCAACAGAGCATGTGAAACTGGTACTGAA TGGTTAAACATAGCTTCGAATACTTGGAAGTTAGTAATCTACTTTTAAGGATTACAAGTGTCCAGTTTGACGATGCTGAT CACTATTCATCAACATGGTGAGGTTTGTTTTGGATGAGCTCTTTGCATCTATTTCCATTCTCTTTGATTTCCTTCCTATA ATCTCAGGTTGAATGCATTACATGAAATGGGTCCTTTTTATTGAACTAAATCGGTTGTGCTTACAGGGCTGCACATGTTA TTAAAATGGCTAAAGAATTCTTCCCAGTGACAGGAGAAAACCTTGAATGGTGGTGATGATACTTGCAGTTCCCAGAATAC ATTTTCCAGCTTGCCTCCTGATCAGAATCAGTCTGTTATACCATCTATTATTAGTGTTGGATGCTTTCTTCAAGGGCAGG TAAGCACAAGTTCTGATGATATGACTGCGCCAGCAAACTCGGTGGCTGGGAAGAGATCAGAGAATAATATTACTGCATCT GAGCTGGAGTCAAATAAATCTGTCGGGGAAGATATGCGAACTTCTCAGAGCTTGGATGGTGATAATGCTGATCAAGGCAC GGTTGCTTCCAGTGCACATTAGTTCAGCTTTCGCAGTATCAAAGGCAATTTGGAAATTACCATGCCAATAGATTTCCAGA GTGCTGCTTCTTATGCTGTTCTGGATTCTCCTGTTTTTTCAGAAAAGACCAGTTCTATAATTCCCCTTACATCTTCATCC CCAGTTGTTGCATTGGCATCTTGACTGGAAAGTGCAAACCATTATGAAGCAAAATCTCCCTTAACTGCCACTCCTTCTTG TTACATATCTTGTAAATATGTAGGATATCTTGTAAATAGGGTAATAATGATATTGTATATTTATTGCAACTATTATATAT ATTAATACGCCCTGCAATGTGGTTGAGACACACGGATTCAATCTATTGTCTAACGGTTCCTGCTCATTCAACATGGTATC TAGAGTCTCACGAGAGTCAATTCTAATTCGTGATTCTCAACGAACACATTTTCCACCAGTGCGATTTTTTTAGACATCGT GTTCCACTGCAGATTCTGCTCACTTTCGACAACCGTCGTCATTTTCCGGCAACCACTGCCGCAACCAACCATTGTTTGCC ACCACAGACCCCACTGCTGCCTTCGCCGCCCTCAGATTGACAAAACCCTATTGTTTTGACAATCATCTGTTGTTGCACAC AAGTCCTCCACCAGCGCACTAGATTCACACGGCCTTCTTTCATCATGTTCAGCAGAAGTTCCAATCAATATTATCATAAG CCATAGCAAAGTCAAGTTTCAGTAGAAGGCCTCCTCCTTGTCTTTTGTTCTTGGAATCCACAGTTTCATTCGCAATGAAA ATACAATCCGCTATTTGCCAGCCCTTTTGTGAAGGAAAACTAGTTCCTTCTAAGTACTGAGGGCATAATTTTTTGGAGCC TACTCGCTAGCACCTTTGGTATTAACTTGTATACGCTATCAATAAGACTAATTGGGTGGAAATCCGAAAGCGAAGAAGGA TAACCTACCTTCAGTATAAGGCAATGAAAGTCATTGAAGACAATAATGCCCTATTTTATCAGCTACCAAAACTCTTTAAA AAAGGCCAAGTTGAAGTCATTCGACCCAGGGGCTCCATTACCATCACAATCCGCAACAACTTCCCATATTTCACCTTTTG TGAAGGGTTTTTCCAACATAACACAATTTGTCTGCTCCACCTTCTTGAGATTTCGACATATTAGCTTCACGTTTAGCCTC TTCTTAGCCTTAAAGAAGTTCTAAAAATGGGTGAAAACTACCTGCTTAATATCTTATGGGTTATACAGTCACTCGTCATT GAAAACTAGGTGTTCTAGATTTTTCATCGCAGCCCGCACCTTGCACACCTGTGAAAAAACCCGATGTTTCGATCCCCTTC TCGAATACAACAGATTCTAGCATTTTGTAGCCAAC 

CDS sequence (LotjaGi5g1v0173400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACAAAACCAATTCGCCCCTATTTTATATGGGTACTTCAAACATATTTAATCCTTTATTTATATAAGTATGATACATC ATTTTATTTCTTAACCAATTTCTTATGGTTGTTTTGCTTTTGCATGATCCATTGCATGAGTTCTTCGTTTAGGTGCGGTG CATCGCAGCTTCGCCCACGCACCTCCCACCCAACAATGGCAACTTCAGTCCTACACAGTCACCACCTCATCTCCCAAACA CTTCGCCCAAACCATGTCTCTTCCTTTCCCCTCAAAGACGCTTTCCAATCCTTCTCTGACCCTTCCGCCACAACCCGCGT CCCTCTCCAACACGCTCTTGACCTCTGCGCCGCCGAGAAAGCTCTTCCACAAGGGCAACAGTTGCATGCCCATTTCGTCA AAACCCATGGCTTGCATGGTTCTATGTTCCTGGACACTAAGCTTGTGCATATGTATGGAAAATGTGGCTCGTTTCTTGAT GCAGAGAAGGTGTTTGATAAAATGACTGAGAGAACTATTTTTTCATGGAATGCCATGATGGGTGCGTTTGTGTCAAGCGG TAGATATCTTGGCGCGCTTGAGTTGTACAAGGAAATGCGGGTTCTGGATGTGGGGCTAGATGCTTTTACTTTTCCCTGTG TGCTTAAAGCTTGTGGTGCTCTTGGTGAGAACCGTTTGGGGGCTGAAATTCATGGTGTGGCGGTTAAGTGTGGATATGGT GCGTTTGTTTTTGTTTGTAACGCACTCATTGCTATGTATGCAAAATGTGGTGATCTTGGTGAGGCTAGGATTTTGTTTGA CAAGGTTATGATGGGGAAAGAGGACAGTGTATCGTGGAATTCTATTATTTCAGCACATGTAGCGGAAGGCCAGTGCTTAG AGGCACTGTCGCTGTTTAGAAAAATGCAGGAGGTTGGCGTTGAGAGTAATACTTACACTTTCGTTGCAGCTCTTCAAGCT TGTGAAGATCCAACCTTTATTAAACTGGGTATGGAGATTCATGCCGCCGTCTTGAAATCGAACCATTTTGCTGATATATA TGTTGCCAATGCTTTGATTGGTATGTATGCAAAATGTGGTCAAATGGAGGATGCTGAACGAGTTTTTAAAAGTATGCCTT TCAAAGATTTTATATCGTGGAATACGTTGCTGTCAGGTCTAGTCCAAAATGATCTATATGACGATGCGCTAAACCACTTC CGGGATATGCAGAATTCTGGTCAAAAGCCTGACCAGGTGTCGGTACTAAACATAATTGCAGCATCAGGCAGATCAGGAAA TTTATTGATTGGCATGGAAGCCCATGCCTATGCAATAAGAAATGGAATAGATTATAATATGCAGATTGGTAACACCCTGA TCGATATGTACACTAAGTGTTGTAGAGTAAAATATATGGGTCATGTTTTTGACAATATGCCTGAAAAGGACATGATTTCT TGGACAACGGTTATTGCTGGCTATGCACAGAATGGATATCATCTGGAAGCTTTGAGTTTGTTGCGGAAGGTTCAATTAGA AGGGATGGATGTTGATCCTATGATGATTGGAAGCATTTTCCTCGCTTGTAGTGGGTTGAAATCTGAAAAAATTATCAAAG AAATTCATGGTTATGTTTTGAAAAGAGATTTAGCTGATACTTTGCTACAAAATGCCATTGTCAATGTATATGGAGAGGTT GGGCACACTGAGTATGCAAGGCGTGTGTTTGAATCTATTAAATCCAAAGATATAGTGTCTTGGACAAGTATGATTACTTG TTGTGTTCATAACTCACTTGCAATTGAGGCTCTTGAACTTTTCTGCTCTCTTATAAAAACTAATATTCAACCTGATTCTA TAGCTCTTGTCAGTGCACTCTCCGTGGCTGCTAGTTTATCTTCATTGAAGAAAGGGAAGGAGATTCACGGATTTCTGATT AGGAAGGGTTTCTTCTTAGAGGGACCAATTGCTAACTCCCTGGTGGACATGTATGCTCGCTGTGGAACTGTGGAGAACAC AAGAAAGATATTTAATTCTGTAAAACAGAAAGATCTAATTTTATGGACTGCTATGATTAATGCAAATGGAATGCATGGAT GTGGAAATGAGGCCATTGTTTTATTCAAGAAAATGACTGACGAAAATGTTATTCCTGATCATATAACCTTCTTGGCTTTA TTATATGCATGCAGCCATTCAGGATTGATAGTTGAAGGTAAGAGGTTTTTTCAAATCATGAAACATGAATATCAGTTGGA GCCCTGGCCTGAGCATTATGCCTGCCTGGTAGATCTCCTTGGTCGATCCAATTCCCTGGAAGAGGCTTACCATTTTGTGA GAAACATGCCTATTGAACCTTCTGCTGAAGTCTGGTGTGCTCTTCTTGGGGCTTGCCGTATTCATTCTAATAAAGAATTA GGAGAGCTTGCTGCAAAGGAGCTCTTACAATCAAATACAGAGAAACCAGGAAACTATGTACTAATATCAAACACCTTTGC AGCAGATGGAAGATGGAATGATGTTGAAGAAGTTAGGTTGAGAATGAAGGGAAATGGGTTGAAGAAGAAACCAGGATGCA GTTGGATTGAGGTTGAGAATAAGATTCACACCTTCGTGGCAAGGGACAAGTCTCATCCAAAGTCTGATGACATTTATCTA AAATTGGCCCAGCTTACAAAACTTATGGAGGAAAAAGGAGGCTATAGGGCCCAAACTAAATTTGTATTCCACAATGTTGA TGAGGAGGAGAAAATACAGATGCTATATGGACATAGTGAAAGGTTGGCACTTGGGTATGGTCTGCTTGTTACCCCAAAGG GTAGTTCTATTCGGATCATAAAAAACCTTCGAATTTGTGATGATTGTCATGCATTCTTTAAGATAGCATCTGAAGTATCT CAACGAGCCCTTGTTGTAAGGGATGCCAACAGATTCCATCATTTTGAACGAGGACTCTGTTCATGTGGAGATTTATGGTG A 

Protein sequence (LotjaGi5g1v0173400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTKPIRPYFIWVLQTYLILYLYKYDTSFYFLTNFLWLFCFCMIHCMSSSFRCGASQLRPRTSHPTMATSVLHSHHLISQT LRPNHVSSFPLKDAFQSFSDPSATTRVPLQHALDLCAAEKALPQGQQLHAHFVKTHGLHGSMFLDTKLVHMYGKCGSFLD AEKVFDKMTERTIFSWNAMMGAFVSSGRYLGALELYKEMRVLDVGLDAFTFPCVLKACGALGENRLGAEIHGVAVKCGYG AFVFVCNALIAMYAKCGDLGEARILFDKVMMGKEDSVSWNSIISAHVAEGQCLEALSLFRKMQEVGVESNTYTFVAALQA CEDPTFIKLGMEIHAAVLKSNHFADIYVANALIGMYAKCGQMEDAERVFKSMPFKDFISWNTLLSGLVQNDLYDDALNHF RDMQNSGQKPDQVSVLNIIAASGRSGNLLIGMEAHAYAIRNGIDYNMQIGNTLIDMYTKCCRVKYMGHVFDNMPEKDMIS WTTVIAGYAQNGYHLEALSLLRKVQLEGMDVDPMMIGSIFLACSGLKSEKIIKEIHGYVLKRDLADTLLQNAIVNVYGEV GHTEYARRVFESIKSKDIVSWTSMITCCVHNSLAIEALELFCSLIKTNIQPDSIALVSALSVAASLSSLKKGKEIHGFLI RKGFFLEGPIANSLVDMYARCGTVENTRKIFNSVKQKDLILWTAMINANGMHGCGNEAIVLFKKMTDENVIPDHITFLAL LYACSHSGLIVEGKRFFQIMKHEYQLEPWPEHYACLVDLLGRSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNKEL GELAAKELLQSNTEKPGNYVLISNTFAADGRWNDVEEVRLRMKGNGLKKKPGCSWIEVENKIHTFVARDKSHPKSDDIYL KLAQLTKLMEEKGGYRAQTKFVFHNVDEEEKIQMLYGHSERLALGYGLLVTPKGSSIRIIKNLRICDDCHAFFKIASEVS QRALVVRDANRFHHFERGLCSCGDLW 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 4 4 -
Phobius 5 22 18 -
TMHMM 7 24 18 -
Phobius 23 27 5 -
TMHMM 28 50 23 -
Phobius 28 50 23 -
Phobius 51 232 182 -
PANTHER 74 221 148 1.9E-154
Gene3D 78 230 153 3.5E-18
ProSiteProfiles 141 171 31 7.465
Pfam 148 171 24 0.015
ProSiteProfiles 172 206 35 9.646
TMHMM 173 192 20 -
TIGRFAM 174 207 34 1.4E-5
Pfam 174 201 28 5.7E-6
ProSiteProfiles 207 241 35 5.831
PANTHER 226 335 110 1.9E-154
Gene3D 231 325 95 6.7E-19
Phobius 233 254 22 -
ProSiteProfiles 242 273 32 7.202
Pfam 245 268 24 0.014
Phobius 255 986 732 -
Pfam 275 321 47 5.2E-10
ProSiteProfiles 275 309 35 11.203
TIGRFAM 277 310 34 6.4E-6
Gene3D 326 425 100 4.1E-19
PANTHER 329 431 103 1.9E-154
ProSiteProfiles 345 375 31 9.35
Pfam 350 373 24 8.1E-5
TIGRFAM 350 374 25 1.6E-4
ProSiteProfiles 376 410 35 11.345
Pfam 376 415 40 4.0E-7
TIGRFAM 378 411 34 2.4E-5
Gene3D 426 542 117 1.6E-12
PANTHER 431 525 95 1.9E-154
ProSiteProfiles 446 476 31 6.04
ProSiteProfiles 477 511 35 9.317
TIGRFAM 479 512 34 0.002
Pfam 479 508 30 5.7E-5
PANTHER 516 632 117 1.9E-154
Gene3D 543 649 107 8.5E-13
ProSiteProfiles 546 576 31 7.114
ProSiteProfiles 577 611 35 9.788
TIGRFAM 579 613 35 1.7E-4
Pfam 579 606 28 2.9E-4
PANTHER 617 851 235 1.9E-154
ProSiteProfiles 647 677 31 6.369
Gene3D 650 740 91 1.1E-18
ProSiteProfiles 678 712 35 9.262
Pfam 681 709 29 2.0E-4
ProSiteProfiles 713 743 31 7.235
Gene3D 741 919 179 4.3E-7
ProSiteProfiles 749 779 31 5.612
ProSiteProfiles 815 849 35 6.796
Pfam 851 976 126 3.0E-42

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0173400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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