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LotjaGi5g1v0173900.2

Overview

Field Value
Gene ID LotjaGi5g1v0173900
Transcript ID LotjaGi5g1v0173900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Histone H2A; TAIR: AT3G54560.1 histone H2A 11; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SST0|I3SST0_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0173900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:44439004..44439611) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCAGGAAAAGGAGGGAAGGGACTCGTTGCAGCGAAAACCACCGCGGCTAAGGACAAAGATAAAGATAAGAAGAGACC CACTTCTCGTTCATCTCGTGCCGGAATTCAGGTAATCCAAAAGTAACAATCTTTAGTCTAAATTGTTAAAAAGAAGGTGG GGTTCAATTTGATAACCCAAATGCATTTTAACCATAAAGTAACAATCTTTAGTGTGAACTGTTCATGAATTGTTGAGAAT TTTGGAAATTTTAGGACCCATTGTTGTAATTTTTCATTTTTTGACTGTTAAATTTGATGGGGTGGTTGTAGTTTCCTGTG GGTCGTATCCATAGACAGCTGAAACAGAGGGTTCAGGCGAATGGGCGTGTTGGTGCAACTGCTGCAGTGTACTTGGCCTC CATTCTTGAGTACCTGACTGCAGAGGTTCTTGAATTGGCTGGGAATGCGAGCAAGGATTTGAAGGTGAAGAGGATAACTC CTAGGCATTTGCAGCTTGCTATCAGGGGAGATGAGGAGCTTGATACCCTGATCAAAGGGACTATTGCTGGTGGTGGTGTC ATTCCTCACATTCACAAGTCCTTGATCAACAAAACTGCCAAGGAATGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0173900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGGAAAAGGAGGGAAGGGACTCGTTGCAGCGAAAACCACCGCGGCTAAGGACAAAGATAAAGATAAGAAGAGACC CACTTCTCGTTCATCTCGTGCCGGAATTCAGTTTCCTGTGGGTCGTATCCATAGACAGCTGAAACAGAGGGTTCAGGCGA ATGGGCGTGTTGGTGCAACTGCTGCAGTGTACTTGGCCTCCATTCTTGAGTACCTGACTGCAGAGGTTCTTGAATTGGCT GGGAATGCGAGCAAGGATTTGAAGGTGAAGAGGATAACTCCTAGGCATTTGCAGCTTGCTATCAGGGGAGATGAGGAGCT TGATACCCTGATCAAAGGGACTATTGCTGGTGGTGGTGTCATTCCTCACATTCACAAGTCCTTGATCAACAAAACTGCCA AGGAATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0173900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGKGGKGLVAAKTTAAKDKDKDKKRPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELA GNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 35 35 - –
PANTHER
PTHR23430
12 135 124 1.7E-79 –
PANTHER
PTHR23430:SF247
12 135 124 1.7E-79 –
MobiDBLite
mobidb-lite
14 30 17 - –
SUPERFAMILY
SSF47113
14 112 99 6.59E-41
IPR009072
Gene3D
G3DSA:1.10.20.10
14 135 122 3.4E-52
IPR009072
SMART
SM00414
15 135 121 7.4E-68
IPR002119
Pfam
PF00125
17 104 88 2.4E-21
IPR007125
PRINTS
PR00620
26 48 23 6.0E-42
IPR002119
CDD
cd00074
26 131 106 1.78133E-56
IPR002119
PRINTS
PR00620
56 71 16 6.0E-42
IPR002119
PRINTS
PR00620
71 84 14 6.0E-42
IPR002119
PRINTS
PR00620
85 99 15 6.0E-42
IPR002119
Pfam
PF16211
105 134 30 1.7E-10
IPR032454
PRINTS
PR00620
112 130 19 6.0E-42
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0173900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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