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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0184200 |
| Transcript ID | LotjaGi5g1v0184200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT5G43420.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16; TrEMBL-Plants: tr|K7N4P5|K7N4P5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0184200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:46820221..46822376) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTCTTTCTATTACTTTTTACATTTTCTGTCGCATTACATTTTATATAACTCTTTTCTCTCTTATTTCTTCCTTATCT CGTAAGGTAAGGTTGATGTGTATTTAGTTTGTAAATGATATATTATTCATTTTATACCCAAACTCTGAGAAATTCACCAA CTGTATACGTACTCTGAGCTAAGACTCCACCCTCCAAGTCCAACCTTAATAAAGAAAACAGGTTTTTGACAACATTATTT TCATTGAATTTCAACCTCCTTAATGTGTTGTCCCCTTCACCAGCACCACCCTCATTTAAACACCTCCTATGTTTGCTCTC TCTTCTCTCTTCTCCACAACACTCCACCATTTCCCATTGCTCTAGAATCTGCTTTTCATTACCTCTTCATTGATTCAACA CTAGTTCTTCTCTCCATTTGATAGTAACTACCATGTACTTTACCCCTTAATTTGGTCCCCTACAATTTTTTTACCTCTTA TCTGTTTCATGAAAGTCCTAGCCTAGTCCAACTAGTACACATGCTAAGGATTTCCCCGGAAAGTGCCAATTTCTTTCCCT CAAAACTCTTGCATTGCTGAGTTTTTGCTTTTAGTATTCATGTCTTGTGTTCATATTCAAGATCTCAGAGAACCCATTTT TCTGCATCTTCTGTAGCATCTGAAAGCATGGATCTTGTAACCAGAAGATTCTTGATCCAACATGGGTCATCACAGTCACA AGCTCTTCCACCAATCACAAGTTCAGGGAGTTCAATCCTTCACCCTCATCTTCATTCTTCTAGCACCAGTTTTCCCATCA TTGCTATTGCTATCATTGGAATCATGGCTACAGCTTTTTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGTTGTCTC AATTGGCACCGCATTGATCTTCTGAGGCGTTTCTCTCCATCTAGGAGGCGTGAAGATCTAACTGCAATGTACTCACCAGG AACAGAACCTCGTGGATTGGATGATGCAGTGATCCGGTTAATCCCATTGATTCAGTACAGGACAGAAGGGAACAGAGAAG AGAAAACCTTCAGTGAGTGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAGGCTCAGGATTATACCAAATTGCAGC CATGTATTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCCAATTGTCCACTTTGCAGAACAAGCATTTCCTT CACAAACAGATCCCAGATTGATCAGTTTCTCAACCAGAGGCTCTCTGTCTCTCAAGATCAAACCCCACCAATTGAAAACC TCATTAGTGGGGATGAGAATTTTGTTGTGATTGAATTGGGTAATGATCATAACAGAGGCCAAAATTTGCAGAGAAGAGAA GAAAGAGAGTTACCAGCATGTCCTATTAGTCCTTTACCAAGGAAATTGGAGCATAGAAATGTGGAAAAGAAACCAAGGAA GCTCCATAAAGTTACAAGCATGGGGGATGAGTGCATTGATATTAGAGGCAAAGATGAACAATTCTCAGTCCAACCCATAA GAAGGTCATTCTCCATGGACTCATCAGGGGATAGACAATTTTATGTAGCAGTTCAAGAAGCTTTGCAGCAGCAGCAGAAG ATGCAAGTCAATGAAGTCAGCTCCATTGAAGGATGCAGTGGGAGTAGTGGTAGAGCCAAGAAATCATTCTTTTCCTTTGG TTATGGAAGCAGGTCAAGAAGTTCTGTTCAACCTGTTTATTTGGACCCCTGAAATTTCTCTGATTCTCACTTGTTTTTCC CTCTTTCCATTATGTTTGCAACTTGCAAGTTTCTCAGGTTTTTTTTTTGGTGAGATAGAGATTTAGATGTATGAATAGGT GATCATAGGATTGTATGACACATAGTTATTCAATTGGATTTAATTAATGTGAAACCATGATTTCTCTTTTATGTTTCCTG GTTTATCTAATGGCATGTGTATGTGTATGGTCTAGTTTAAACGGCACGGAGCCATGATGATGATTGAGGAGCATCATTGT TGAAATCATCACATTGTAGCTTTCTTAAGCAAACATTTTCCTCCTACAGATCAATCAATTAAGTGTGTGTTTAGATATCG GTTAAATTAATGTGAACAGAGAAGAGAAGAGTTATGTTCAATTTTTACCTCAAAACGAATGCTAACTTCAGTTGAT
CDS sequence (LotjaGi5g1v0184200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTTGTAACCAGAAGATTCTTGATCCAACATGGGTCATCACAGTCACAAGCTCTTCCACCAATCACAAGTTCAGG GAGTTCAATCCTTCACCCTCATCTTCATTCTTCTAGCACCAGTTTTCCCATCATTGCTATTGCTATCATTGGAATCATGG CTACAGCTTTTTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGTTGTCTCAATTGGCACCGCATTGATCTTCTGAGG CGTTTCTCTCCATCTAGGAGGCGTGAAGATCTAACTGCAATGTACTCACCAGGAACAGAACCTCGTGGATTGGATGATGC AGTGATCCGGTTAATCCCATTGATTCAGTACAGGACAGAAGGGAACAGAGAAGAGAAAACCTTCAGTGAGTGTGCTGTTT GCTTGAATGAGTTTCAAGAAGATGAGAGGCTCAGGATTATACCAAATTGCAGCCATGTATTTCACATTGATTGCATAGAT GTTTGGCTTCAGAACAATGCCAATTGTCCACTTTGCAGAACAAGCATTTCCTTCACAAACAGATCCCAGATTGATCAGTT TCTCAACCAGAGGCTCTCTGTCTCTCAAGATCAAACCCCACCAATTGAAAACCTCATTAGTGGGGATGAGAATTTTGTTG TGATTGAATTGGGTAATGATCATAACAGAGGCCAAAATTTGCAGAGAAGAGAAGAAAGAGAGTTACCAGCATGTCCTATT AGTCCTTTACCAAGGAAATTGGAGCATAGAAATGTGGAAAAGAAACCAAGGAAGCTCCATAAAGTTACAAGCATGGGGGA TGAGTGCATTGATATTAGAGGCAAAGATGAACAATTCTCAGTCCAACCCATAAGAAGGTCATTCTCCATGGACTCATCAG GGGATAGACAATTTTATGTAGCAGTTCAAGAAGCTTTGCAGCAGCAGCAGAAGATGCAAGTCAATGAAGTCAGCTCCATT GAAGGATGCAGTGGGAGTAGTGGTAGAGCCAAGAAATCATTCTTTTCCTTTGGTTATGGAAGCAGGTCAAGAAGTTCTGT TCAACCTGTTTATTTGGACCCCTGA
Protein sequence (LotjaGi5g1v0184200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLVTRRFLIQHGSSQSQALPPITSSGSSILHPHLHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDLLR RFSPSRRREDLTAMYSPGTEPRGLDDAVIRLIPLIQYRTEGNREEKTFSECAVCLNEFQEDERLRIIPNCSHVFHIDCID VWLQNNANCPLCRTSISFTNRSQIDQFLNQRLSVSQDQTPPIENLISGDENFVVIELGNDHNRGQNLQRREERELPACPI SPLPRKLEHRNVEKKPRKLHKVTSMGDECIDIRGKDEQFSVQPIRRSFSMDSSGDRQFYVAVQEALQQQQKMQVNEVSSI EGCSGSSGRAKKSFFSFGYGSRSRSSVQPVYLDP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| PANTHER | 15 | 353 | 339 | 5.5E-141 | – | |
| PANTHER | 15 | 353 | 339 | 5.5E-141 | – | |
| Phobius | 42 | 65 | 24 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 66 | 354 | 289 | - | – | |
| Gene3D | 104 | 183 | 80 | 3.4E-21 | ||
| SUPERFAMILY | 130 | 179 | 50 | 1.27E-20 | – | |
| CDD | 130 | 173 | 44 | 1.96386E-16 | – | |
| Pfam | 130 | 173 | 44 | 2.2E-13 | ||
| SMART | 131 | 172 | 42 | 1.9E-7 | ||
| ProSiteProfiles | 131 | 173 | 43 | 12.917 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0184200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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