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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0191500 |
| Transcript ID | LotjaGi5g1v0191500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr|A0A151U5T5|A0A151U5T5_CAJCA Polycomb group RING finger protein 1; Found in the gene: LotjaGi5g1v0191500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48456450..48462379) extracted from Lotus japonicus Gifu genome v1.2.
CACACATCATTGCCGTTTCTTCTTCTCTCTCTCAGATACACACAGTACCATCTCTTTCGTTGGAACACACGCTCACTCTT CTTCATCACGTTAACGTGTTCTTCACCTTCCATCAATCACATAAAGCCAAACAACACCCTCCACCACAGTACAAAATCCA AATAGAATCCCACATTGTTTTTGTTTTCATCGTTCAATCTCATAGCTTGGTCAACAATCGATGTTACGATTCTTGATTGA TTGAAACCCTTACATTCAATTTTGTGTTTTTGTTCTTTGTGATTCTCGTTGGCAATGTTGTTTTTGTTTGTTTGATGACA TGCACCACCATCAATGTGTATGTGTCGTTGTCAGCAGAGACAATAACAATGACATTAAGAACGAGGAGCTTCATGGTGAA GGTTCAGAGGGCGAAGCTATCGGCATGCTTCACGTGTCTTTTGTGTGATAAATTGTTCAGAAACGCCACCACAATTTCTG AATGCTTGCATACTTGTAAGTGTTGATTCTTTGTTTTTCTCATCATCATCATCATCATCATCCACATTCCTCTGTTTCCC CTGCTTCTATGTCCTCTTCAATTTTGTCTTCAATCTCCCTTACTCTAGATTATGATTTGTAGGTGATTCTGTATGCAATC TGCATTATAAAGCTTTGAACTTGTTTCAATTGAAATGTTGATGTTTTTACATGAAGTTGACCAAGCTGTATGTATGTCTT GATTAAAATATTTTTGTTTTTGTAGACCCAACTTAAATGAAGCAGGTGCCTAATTTTTCACATAGATTGCCTTAGTGAAA TGATATTTTGATTCCAATTAACAGTGGATTCATGATTCTATGATTGGTATTTAGTGAAATAATCTTACCACCTAGATGGA CTTATAGGGCCTCTTTGGTATGATTGGACCTAAAATATTTATCTAGAAGCTTAAGCTCAAGTTCATTGTAAATTTTCTTC TAATATTAATTCTTTCTAAACATTCCCTATAATATGCATCTGACTTGTTTTCATTAGGAAATCTTGATTGATAAGCCTCA GGATTCCAACATAAATTTACAGGACCAAGGTCTTCTTCCAAATGCAAATCAATAGAAAATTTCTTCTGTTGTTATTATTC CTGTTTCTGATTTCACTTCTTGCTTTTTTTTTAGCTTGTTCTTATGCTTAGTCCTTTTAGATTCAATAACTAAGACTTGT CTATCATTGTGCTTTTATATATGCCACAATGAACTCGTTTGGCTACTGACTTGACTTATTGGAGCTTATCTACTTGAAAA AGCACTGGATGAGCTCTAATAAGTGTTCTTTGATTTGCATCCAAACGGGTTCAACGGCCCTCATCCCCTTGCTTTCTGTT CATTTATTTTTTTCATCTTTTACATGATGAATATATTCATTGTTTTTCTTTTCCATTTACCTATATGTGATGTCATTCTC CGTGTGCATGCCTAAATCTCAAGTTCAATAACAGTTTGCAGGGAATGTATAAATAAGAAGCTAATAGATGAAAATTTACA GCACTGTCCAGTGTGCAAGGCAGACTTGGGTTGTTCTCCTTTAGATAAATTAAGGTATTCACCATGAATGTGACTTCTGT TTCAGGAATGATTGGCTTATTGGTCTGTTATTTCCGTTGCTGCAGTAATTGGTCCAGGATCTCTATATTGTTCTATTCTA ATTCATATCATCATTAGAAAATTTGCACAAGTATAGATTGCTACAAATGTTCACATCCAAGTCTTTTGATCTTTTAGCTT TCACCTAAGCCATTTGCTGGTTAAATATGTTGGATCATTTCTTAAGTTGTAAATAATGGATTTTTTAATTTCGTTTTTTA CATCTAATTGATTTACAATGTAGAACTTTGCAGGGATAGGACAAAAAAATATGTGTGCTAATGATGAACAACTAACAAAA TACATTACTAATTAAGAAAAGAGGGATTTGGCATCTAAAAAGTGTGACTCACGCTCTCTGCCCAACCTGGCCCTCTTTTG CTTGTTAGATAGGATCAGTGAAATGTGTACTAACTATTAAGGGAAAAATACATATTTATAGGCTTTAACTTATATGTATT CTGAAGTTCATCATTTATTAAAGTAGACAGTGCTAATGATCCAATGTCAATGTTTTAACATGTCACATTGCAGCTAAATT GGAGGTTTTAAGTTCTACATAAGTTTTAGCTTAAAAATACACGTTTCAATCAAAATCTCTATCCAATGGTGCACTTGGAC TATTGTTTTTAGTGGAAATCTGCATGTAGGATAGTAAATCTCAGCGGTCTATTACTTACAGTTTGGCTTTGCTTGTACCT CAAGTATTCTTATAAATAACTACATTATATTTTGTGAATTCTTTCAAATCATACTATGAATAGTATTAATGCACATAAAT ACTATTCTGGGTAACGATGAGCTCTTAATTATGGGGGAAATATGGTGGAGAATATTGGTTGTATTGTTAAGTGGGAACTA ATGAATGACATTTATCATAATAAGAGTTCTTATTATGGTTTAAATCAAGGTCCATGATCACAATTGTGGTAGTGACATCA TGGTTTTGAGGGTCTCCACGATTGCAATTGTGGCTGCTTCAACCATTTTGCCCACAATTTTTCACAATATCAATAATCGC GACGTGACAATTTAAAACTTTGCTTGTTACTTTTGTGAATGCACAATGTGAGAAATTTGATAAATCAAACTCTGCAATTT TCCCTTTTCTTGGTTCTTTGTGATAGTTAAAATTTATTTGATTTCATTTCTCTCTTTTTCTTTGGAATTTTTTCTGAATT TTGCTCTACTTTTATATTCTATTTGAAATATACAGGGGAGATCACAGCCTGCAATACTTGAGGGAGAAAATTTTCCCATG TGAAGGAAAAAATGCGAAGGTTCCTCAAAATGGTGCTTCAGTTAGACCGAAAAGAAAGAAGAAGAATTCTTTATCTTCAT TAAAAGCCAAGGCAAGAAGAGCAAAAGCTGCTGCAAGAGAAGCTTCTACTCCACAAGAACCTGTGCTTTCTGCTTCTACT CCACAAGAACCTGTGCTTTCTGCTTCTACTCTACAAGAACCTGTGCTTTCTGCTTCTACTCCACAGGAACCAGAGCTTTC TGCTTCCATTCCACAAGAATCAGAGCTTTCTGCTTCTAAACCTGATAAAGTGGAAGATGTAAGCCAAGGTACAAAACAGT GTGGGATAAATATTTTGGATGAAGTTTCTACAATTCAATCTGCAAGAAGAGCCAAAGCTGCAGCAAGAAGAAAATTCATT CGATGTGAATTAACTCCTACTTCTCAACCCGACAAAGTAGTAACAGAAGATAAAAAGAAAGATGATGACCCTCTCCAGCT TGAAACTCCCTCAGAGACTTCAAATACCAGAGTTCAGGTAAAAGAGGCAAATATTTTTCCTTCCTTTATTCTTTTTTTTC TGGTTCATGTCAACATTTTACAATCCTGAGTGTTTTTCTGCTTTCTCTTGCTCCCAGTGTCTATTTCAGGAAACTAGTGG TACTTTATTCCTTCTGGCCTCACTTTTTGTTAGAAAGATATTTGCATGTGCTCTTTAGAGATAACTTGGATAAACTTCTC AACAAGTACGAGCAACTTTGGATAGTAGAATCAATTTTACTTGGTTAAAATCAATTCTAACCAGTTGAAATGTTGTTTGC GTGTACCAGTAAAATTGATTTCATGGGCAGAGAATTGGATCCACTTAGCACAAAAAATAATTGTTTCTACGTTAAACATA AGCAAATCTGAGATTTTACCACTAAATTTCATAATATTGCCCCTACAAAAGCCATTTTTTTATGAAGGTATCCAAACATA AGTCACATCATTTTAACTCACATTTACCATACACAGTTTTACTATAAATGCTGATCCAAATACACCACACAAAACTAAAA ATGCGTGTTTGGATCAGCTTATTTTTTCCCTGAATCAATTCTTGCACTCAAAAGCTTCTCCCCAGATTTGATTTTGACTT TAGAATCAATTATAGAAGGGTTTCCACACAAAGTTATATGAGCTTCTTACAAAAGATAAAATCAACTTATGTATCTCAAA TTTTCAACTTTTTTTAGAAGCTCCCTAATCTAACTCCTCCATCAACACCCATAATCCTATATGACTTTTTTCTCAATTAG AGACCAAATACTTATCTAAGTTGAAAACCTCCCATTAGTTAGAAGCTAATCCAAACAGGGTCTTAGTACAAAACTATCTC ATGAACAATTGTTTATTATGATTTAGCAGAATTCTTCAGAACCAGATTCAAGTCAACAAATAGAGCCCAACAAGATTTCA GGGGAGAGAACAGAGTTATGGAACGAAAATGTTGATGTCCACGAGCCATTGAAATGCATAGTGGAAGCTGCAAGCAAAAA AAAGTCTCGTATCAAGTCCACCATGCAAGAAAATGGTGTCATTCCACTGCTTGTTGACTCTAGTGACAATGACTCCCAGG TTTCTGAGGTCGAAGTTAAGACACATTGTCACCAAATAAACAATTCTGGTGATCAAAATGAGTTTCCTCCTCCAAAGTTG AATACCTTCGATCTTAACCAGCTTCACATCACCGAAGAAAGAACAGCCAAAATCTCTGAGGACTTGAATGTTCCAGCACA ACCTGAGATTGATTTGAACAGTGAAAGCAGCAAAGCATTTGGTCCAATCTGGTTCTCTTTGGTTGCTTCTCAAGAGAAGT GCGTTTACTTTTCATGACTTATTCAATATTCATCTTTTCAATATTATTGTTCTTAAATGATGACTATCTGACATTTGATC TTCTGGATACAGGGAAGTAGGTGCACGATTGCCACAAATAACTTCCTGCTACATAAGGGTCAGGTGAGTTTTTTACATTA TGAGTTTTTGTTTGCTCCTGATGTTCTTAGATCATTCCTTTCCTTTTCGGGACTTGAACTAAATTACGGGTAGTTGGTGC GGATCTGAACATACTCAACGAGTATGGGGTGACATTCAAGTTGCTATAGATGCAAGAATAGAGATAGGTACAAGGGGTAC TTTTTAGAATCCAGGTAGAGTGACAAGGATTATGGTACTCTACTCATACTCTACCTACGCGAGATATTTAACACCTTGTT TGTGCAGTCGAGGAGCAACTAACTACTCTTCACTCATTTTATTGCTACTCAATTAGAGTTTCAAATTTGGACAAGTGCGT TTAATTGGCATTGTACATTCTGTGACAACTTCCACTAATGAATCTTCAAATTATTATAGGGATGGTAGTTTACCGGTCTC GTTTATCAAAAAGTATCTCGTAAAGAAGCTTTATCTTGCTAGTGAAACCGAGGTAAATTGGTCTTCTCTCTTTGCTAAAT CTTACACCATTGTGATTTGTATACAATTAATGAATTCCCATTTATGATTGACAAGTTAATTGCTTTTCTGATTATAACCT TACAGGTGGAGATCTCACTACAAGGACAGCCAGTTTTATCTTCATGGCAACTGCAAAACTTAGTGGATTTTTGGTTACAA ACAGTGCCAGCCAATGAGAGGATCCAGACATCAATTGGAAGCTCAGCTAAGGATTTTGTCATGGTCCTTAAGTACAGTCG AAAGACTTGAGAGCTCATAAAACTACCTTGCCATGCTTTTCTAAGGAAATTTAAAAAATTTCTGTTTTTTGAAGTCGAAA CCCCACATATGCTTGATTGAGTGCTATGTGTGGTATATTGTTAGAAAGATAGGGATGTATTAACTCATAGAAAAGCATTT CTTTCACATTCATTTTTTACACCTCATTCTCTAACCTTCATTTTGTTGGAAAGGAGAGAAAGTACATTTTCCCCTCTTTT TTCTGTTAAGGTCTAAAGGGTGAGGGTAGCTGTGAAAATTGTTTTAAGAAACAAGAACTCTATTAACATGGAGTATATTA CTATAAGGCC
CDS sequence (LotjaGi5g1v0191500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACATGCACCACCATCAATGTGTATGTGTCGTTGTCAGCAGAGACAATAACAATGACATTAAGAACGAGGAGCTTCAT GGTGAAGGTTCAGAGGGCGAAGCTATCGGCATGCTTCACGTGTCTTTTGTGTGATAAATTGTTCAGAAACGCCACCACAA TTTCTGAATGCTTGCATACTTTTTGCAGGGAATGTATAAATAAGAAGCTAATAGATGAAAATTTACAGCACTGTCCAGTG TGCAAGGCAGACTTGGGTTGTTCTCCTTTAGATAAATTAAGGGGAGATCACAGCCTGCAATACTTGAGGGAGAAAATTTT CCCATGTGAAGGAAAAAATGCGAAGGTTCCTCAAAATGGTGCTTCAGTTAGACCGAAAAGAAAGAAGAAGAATTCTTTAT CTTCATTAAAAGCCAAGGCAAGAAGAGCAAAAGCTGCTGCAAGAGAAGCTTCTACTCCACAAGAACCTGTGCTTTCTGCT TCTACTCCACAAGAACCTGTGCTTTCTGCTTCTACTCTACAAGAACCTGTGCTTTCTGCTTCTACTCCACAGGAACCAGA GCTTTCTGCTTCCATTCCACAAGAATCAGAGCTTTCTGCTTCTAAACCTGATAAAGTGGAAGATGTAAGCCAAGGTACAA AACAGTGTGGGATAAATATTTTGGATGAAGTTTCTACAATTCAATCTGCAAGAAGAGCCAAAGCTGCAGCAAGAAGAAAA TTCATTCGATGTGAATTAACTCCTACTTCTCAACCCGACAAAGTAGTAACAGAAGATAAAAAGAAAGATGATGACCCTCT CCAGCTTGAAACTCCCTCAGAGACTTCAAATACCAGAGTTCAGAATTCTTCAGAACCAGATTCAAGTCAACAAATAGAGC CCAACAAGATTTCAGGGGAGAGAACAGAGTTATGGAACGAAAATGTTGATGTCCACGAGCCATTGAAATGCATAGTGGAA GCTGCAAGCAAAAAAAAGTCTCGTATCAAGTCCACCATGCAAGAAAATGGTGTCATTCCACTGCTTGTTGACTCTAGTGA CAATGACTCCCAGGTTTCTGAGGTCGAAGTTAAGACACATTGTCACCAAATAAACAATTCTGGTGATCAAAATGAGTTTC CTCCTCCAAAGTTGAATACCTTCGATCTTAACCAGCTTCACATCACCGAAGAAAGAACAGCCAAAATCTCTGAGGACTTG AATGTTCCAGCACAACCTGAGATTGATTTGAACAGTGAAAGCAGCAAAGCATTTGGTCCAATCTGGTTCTCTTTGGTTGC TTCTCAAGAGAAGGAAGTAGGTGCACGATTGCCACAAATAACTTCCTGCTACATAAGGGTCAGGGATGGTAGTTTACCGG TCTCGTTTATCAAAAAGTATCTCGTAAAGAAGCTTTATCTTGCTAGTGAAACCGAGGTGGAGATCTCACTACAAGGACAG CCAGTTTTATCTTCATGGCAACTGCAAAACTTAGTGGATTTTTGGTTACAAACAGTGCCAGCCAATGAGAGGATCCAGAC ATCAATTGGAAGCTCAGCTAAGGATTTTGTCATGGTCCTTAAGTACAGTCGAAAGACTTGA
Protein sequence (LotjaGi5g1v0191500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTCTTINVYVSLSAETITMTLRTRSFMVKVQRAKLSACFTCLLCDKLFRNATTISECLHTFCRECINKKLIDENLQHCPV CKADLGCSPLDKLRGDHSLQYLREKIFPCEGKNAKVPQNGASVRPKRKKKNSLSSLKAKARRAKAAAREASTPQEPVLSA STPQEPVLSASTLQEPVLSASTPQEPELSASIPQESELSASKPDKVEDVSQGTKQCGINILDEVSTIQSARRAKAAARRK FIRCELTPTSQPDKVVTEDKKKDDDPLQLETPSETSNTRVQNSSEPDSSQQIEPNKISGERTELWNENVDVHEPLKCIVE AASKKKSRIKSTMQENGVIPLLVDSSDNDSQVSEVEVKTHCHQINNSGDQNEFPPPKLNTFDLNQLHITEERTAKISEDL NVPAQPEIDLNSESSKAFGPIWFSLVASQEKEVGARLPQITSCYIRVRDGSLPVSFIKKYLVKKLYLASETEVEISLQGQ PVLSSWQLQNLVDFWLQTVPANERIQTSIGSSAKDFVMVLKYSRKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 194 | 169 | 2.9E-140 | – | |
| Gene3D | 26 | 147 | 122 | 3.0E-14 | ||
| PANTHER | 26 | 194 | 169 | 2.9E-140 | – | |
| SUPERFAMILY | 36 | 90 | 55 | 6.13E-10 | – | |
| SMART | 41 | 81 | 41 | 8.9E-5 | ||
| ProSiteProfiles | 41 | 82 | 42 | 11.884 | ||
| Pfam | 41 | 81 | 41 | 3.4E-8 | – | |
| ProSitePatterns | 57 | 66 | 10 | - | ||
| MobiDBLite | 117 | 213 | 97 | - | – | |
| MobiDBLite | 122 | 137 | 16 | - | – | |
| Coils | 126 | 146 | 21 | - | – | |
| MobiDBLite | 154 | 198 | 45 | - | – | |
| PANTHER | 225 | 525 | 301 | 2.9E-140 | – | |
| PANTHER | 225 | 525 | 301 | 2.9E-140 | – | |
| MobiDBLite | 252 | 295 | 44 | - | – | |
| MobiDBLite | 254 | 269 | 16 | - | – | |
| MobiDBLite | 270 | 295 | 26 | - | – | |
| CDD | 420 | 523 | 104 | 2.51326E-43 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0191500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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