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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0194800 |
| Transcript ID | LotjaGi5g1v0194800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine rich repeat receptor kinase, putative; TAIR: AT4G22730.1 Leucine-rich repeat protein kinase family protein; Swiss-Prot: sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930; TrEMBL-Plants: tr|I3T117|I3T117_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0194800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48964622..48966256) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTAAAATTATTATTGGGAAATCTAACCATATCAACTATGCATTGGAGATGCTCTAAGTTTTTGAAAGTGTCCAACAT GTCATGAAACAGTTGCTACTGCCTTTCATTTATGGTTTTCCCCCGTTCCCTTTAGTACCTGACTTTCCTTACCTGTGACA CATGTCTTGTTTGTAACATTGACCAAACTCTCTTTGCTTGAGAAACAAAGCGTTACATAGCTTTGAGTTCAAAAACCACA ACTTGTTGCTCTAGAGTTCAAGTGTGAAAACCAATCTCTCTTGAATCCTAAACCATTCTGAACTGAAAATGGGGTTTTCA GCATCACTTCTTCTCTTCCCTCTCCTGTTTTTCCTCTTAAATCCAACATGGGTACATGGGAATGCAGAGCTAAGAGCACT CATAGACATGAAAGCTAGTTTGGATCCAGAAGGCCATCATCTACGCTCCTGGACTATCAATAGTAACCCATGTGGTGGAT CTTTTGAAGGAGTGGCATGCAATGAGAAGGGTCAGGTTGCAAATATTTCTTTGCAGGGAAAAGGGCTTCCAGGGAAGCTT TCACCAGCCATTGCTGAGCTCAAGCACTTGACAGGACTCTACTTGCATTATAACTCTTTGAATGGAGAGATACCAAGAGA AGTTGCAAACTTGACTAAGCTTAGTGATTTGTATTTGAATGTGAATCATCTTTCTGGGGAAATCCCTCCTGAGATTGGCA GAATGGAGAGCTTGCAAGGTATAATCTGTGATTCTGTTGAACATGTTTGAAACTTTTATTCTAAACTGTCTTTGTGTTTC TTCAAAATTTGCTGTGTTGAAAGTTTGTTTCTTTTTTCTTCTTGTACACTTAAAATGCTGTTTTAGACATGGGTTTCACC TAAAGATTTGAACCTGGTTGTGTATTAGGAACTATGATCCAGCAGCTGGCCCAAGTGAGTCATTAGCCCATGTGGGGTCG AAGCCCAAAGAGTGGAAGGTATACTCTAGAAGGGGCAAAAGGGACAAAGGGAGTAGTAACTAACTAACAGCACAGCTGGT GAGCTGGCGAGAGAGAGGGGAGGTAGGATTGTAATCCATTCCATAATATAAGGAAGGTAGTGAGAGGTAGGGAAGGCATT CTGAAATCATTGAGCGTGTAGTAATGAGTAGGAAGCAATAGCTTCCTATAGGAGCTTGGCTCTGGTCAGTTTAGGAAAGG CTTTTTCCTTCTCTGTAACGATTTCCAATTCATCAATAAACAATCCTGATTACTGTTTCATTCCTTCAGTTCTATTTTCT GTTTTGGGTTTCCATCAAATTGGTCCGACCTGCCGGATTGATTCGCCGGAACCAGTGAATGCCACCCAGAAAATCCAAAC ACACGACAAACTCGATGGAAGCAAAGCTTGATGCTCTTGAAGGCGAGCTCGCTGAGATGCGAACGTCGCTGGTAGCTGTT ACGACGGCGATGAAGGATCTTCCTGCATCGTTGATTGCGATGATGGAACGATCGTTAGGAAAAATGTCACACAGGGAAGA TGCAAGTGCAAACCGAGACAAGGGAGAAAGCTCAAGCGCTGAGGTTCCTGAGCAACCTGAAGCGAACGAAGGAGGACCAC GAACGCAACCTCTACACGGCGATGCGTTGGCGGAG
CDS sequence (LotjaGi5g1v0194800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTTTCAGCATCACTTCTTCTCTTCCCTCTCCTGTTTTTCCTCTTAAATCCAACATGGGTACATGGGAATGCAGA GCTAAGAGCACTCATAGACATGAAAGCTAGTTTGGATCCAGAAGGCCATCATCTACGCTCCTGGACTATCAATAGTAACC CATGTGGTGGATCTTTTGAAGGAGTGGCATGCAATGAGAAGGGTCAGGTTGCAAATATTTCTTTGCAGGGAAAAGGGCTT CCAGGGAAGCTTTCACCAGCCATTGCTGAGCTCAAGCACTTGACAGGACTCTACTTGCATTATAACTCTTTGAATGGAGA GATACCAAGAGAAGTTGCAAACTTGACTAAGCTTAGTGATTTGTATTTGAATGTGAATCATCTTTCTGGGGAAATCCCTC CTGAGATTGGCAGAATGGAGAGCTTGCAAGGAACTATGATCCAGCAGCTGGCCCAAGTGAGTCATTAG
Protein sequence (LotjaGi5g1v0194800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFSASLLLFPLLFFLLNPTWVHGNAELRALIDMKASLDPEGHHLRSWTINSNPCGGSFEGVACNEKGQVANISLQGKGL PGKLSPAIAELKHLTGLYLHYNSLNGEIPREVANLTKLSDLYLNVNHLSGEIPPEIGRMESLQGTMIQQLAQVSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 6 | 144 | 139 | 8.1E-53 | – | |
| PANTHER | 6 | 144 | 139 | 8.1E-53 | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Gene3D | 22 | 148 | 127 | 5.8E-31 | ||
| Phobius | 25 | 155 | 131 | - | – | |
| Pfam | 25 | 65 | 41 | 1.8E-9 | ||
| SUPERFAMILY | 27 | 143 | 117 | 3.36E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0194800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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