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LotjaGi5g1v0194900.3

Overview

Field Value
Gene ID LotjaGi5g1v0194900
Transcript ID LotjaGi5g1v0194900.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Lon protease homolog; TAIR: AT1G33290.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P51281|YCF45_PORPU Uncharacterized protein ycf45; TrEMBL-Plants: tr|A0A072VN28|A0A072VN28_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi5g1v0194900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:49001963..49006909) extracted from Lotus japonicus Gifu genome v1.2.

GGCGTTGCGACACTATCATCATCTTCTTCATGTTGGATGGTGGCGCCATGGATTTCAAAGACAAAACCACACACCACTCT CAAATTCAACTGCTCGCAAGCCTCGCCGCCACTTCCACACTCTTCTTCTTCTTCTGCGCAGAAAGACGACCTCCAACCTC TCTTACAGGCACCTTCTTCTTCCCTCTTCCTCCATTCCCAATTCGTATTCACTGCTTTCTCACTCACACCCATGTATCTT CTCTTTTGCAGATTCTTCCCTCTGATTTGCATCACAATCTCCTCAATCAAGCAAATCGCCCTCAACTTCTAGAGGTCAAT TTCCAATCATCTCTTCCAATTATGAAGTTAAACACCAATCTTATATTATACCCAATTTCGTTATTTTAGGTTATTTTGGA TTTGGGTCGTTACCCAGAAGCTCGTTACCTAGGAAAACTTGGTAGCCAGTATCTAAGGAACACTGAGGTAATCATAATTT CTTAAAAATTAGACCTTTTTATTACTACTTTCATTTTCAAATTTTTCAAGGAAGATGGAAGTTAGTAATTAAAAAGATTA AATTTTTGGTCTACTTTAACCAAGAGGGGTAGCTCAGTTGGCAACGTAGGCTGAGTGTGTGGGAAGAGCTTTGGGGTTCG ATCCCCACACAATACACACTGGGGGGATGATGAGCCTTAACTGTGACTAAATCCCGAATCTGACAGCATCCAAAGGGTGT CCGGTACCGGATATTTATACCAAAAATAAAATGGTCTACTTTTTTGATTCATAATGGTAATTAAATTTGCAAAATTTTGG AAAAGATTTGTATTGGAGGGAATTTTTTGTGTGGTTTGATGTGTTGAGGAATGTGTGTGTAGCTAGGTAACGGTGAAAGA GTTGGAACATGCTCAACAAGCTGTTGGTGAGTTTGGGAGGGACAATAGAGCTGGCATTGAGGGTACGTTGCATCGGATAT CCGCGATAAGGAGTAGGAATGGTGCCATTGTTGGGTTGACGTGTCGGGTTGGGAGGGCGGTCAGCGGCCACATTGACATG GTTTATGATCTGCTTCAATATGGGAAGAACATTTTATTTGTTGGAAGGTATAGCAGCAGCACCCTATTCATAGCTTGTTC CATTGTTGTATTTATCATTTTATCTTTTGGTCTAAATACTAGGACATCTTTTTTAAAAAACAAAGTTATAGACTTGGTGG GTTCCTTTACTGGCACTGTTAATTGGAATATATATATAAATCTAATTCACTCCTTTGGAGGTTTTGAAATCTATGTTATG GAAATTGACAAAATGTAATAAATGGTACTAATCATGGTTTTCTTGATTTCCTAATCCAATCCAACAGCATTATAGAATGT CCAACTCATTCACCACACATGCTTTATTTACCATTATCTGATGATGTTTCTTTTTGCTTGGATATCCTAAAATTTGGATT CTCTTAGGCCTGGGGTTGGCAAGACTACCGTTATGCGAGAGATTGCTCGTGTACTGTCTGATGAATTTAACAAGAGAGTG GTACACTTATTTCTCAGTGTCTCACTGTGCTCTTTCTTTCTCAGACTACTTTGTTGATCAGCTTATGAATAGAATAAACT CTTGCAAATTGGGTAGGTGATTGTTGATACCAGCAATGAAATTGGAGGCGATGGCAATATTCCTCATGCAGCAATTGGGG GTGCACGAAGAATGCAGGTACCTGAGCCATCAATGCAGCATAGCGTGATGATTGAGGCAGTAGAAAATCACATGCCTGAG GTGATTATAGTCGATGAGATTGGCACAGTAGCTGAAGCTCATGCTTGCAGGTCAATTGCTGAGCGAGGCATTATGCTTAT TGGGACTGCTCATGGAGAGCAGCTTGAGAATATCATGAAGAATCCTACACTCTCTGATCTGGTTAGTTCTTATTTTCATT TGGTTGTGCCAACAATAACATTTAAGACATTTTAGTTTTTCTCCCTTTAAGACGTTGAGCTCTCTAGCTTGGTTGAGTGG TTTATCTGACAAAGTGACTATCAATTTCTTCAATGTAAACTTGAGCTGCATTTTATTTCATTCGTTCATTTGAAATACAT GTTGAGCAGATTAGTGTGTGATGTTAAAGAGATGCTTGATTTGTGGAAATGAGTCATTATGCAATCTAATCAAGTTTAAT ATTCAAGATCCTCCTCCATTTGCTTTATCAGATTGGCGGAATAGCAAGCGTTACTCTGGGAGACGCAGAAGCCAGAGCAA GAAAGTGTCAGAAGACAATTCTTGAGAGGAAAGCACCTCCAACATTTGATTTCGTGATGGAGATGAGAGACAGACACTAC TGGATTACACATCAGGTATGTTAATTGAGCATTTATTACTCCAGTCAAGAAAGATTCATATCTTGTGGATTGCATTGGTA AAAACCTTTTTACCAAGTAAAAACCTTCTTTCAAACTTATCAGGTAAAAACCCTTGAAAACCCCTTCCAAGTAAAAACCT TTTTACAAACTCAATAATCAAATCCTAATCCTTATGTATTATTGTATTAGGAAGACACTCTTATTTATAATAAATAAACT AACACTACTAAGAAAATGACACTGGCCCAACATAGGCCCGACTCCACTAATAAAACAAACTAAAAGATAGAAAAGTTAAA CTAAAGATAGACTGAGCCATACAGATCCATGAATCCACTAACAGTAACAAATAACACTAGCCCAGGGTCACCCAGGATCC CTAGGCCCATTCTCTTGGATCCCAACACATCCTATATATCCCAAGTTGGAGGGCAGACAAATGGGATTTCGGGTAGAACA TAAATTCATTCCATCATAATATCATATTTCATCGCATTGCATCCTACTTTTAATTATCCAAACATTGGAACTTTGTATCA TTCCTTTCTATCAATCCAAACATAACAATTGCAATAACAACCAAGCCTTACCCTAGGTGGGTTCAGCTAGATGCATTAGG TGATGCCATAAAGCTCTATCATGTATTATGTAATCCAAACATAACCTTAGTGAAAAGTTATTTCACACTGTTGCTTTAAA TCATTTTTTATAGAAGCTTTTCTCTGTTAATACTTTTTTACTAACCATTATAACTTCTTTTCAAAATAAACACCAGTCAT AGTATCTAGGGGTTGAACGTGAAATTTTTATAACTATAATTATACTAAAAATCATGAAAGTAAATGCTAGAATGGATTGC CATATACTCATATACAAGGTTTTAAATATCGCTCCGTTACATGAATACCGGCCGCGAAATAACGGTTTCGGTGGCCACCG ATACCGAAACAGGACGATTTCACGGTGGGAAGCAAAATCACAGGTAACGTCCGCAACAGAACAATATTGCGGCCGCAACG GACGCAACGCAACGCCGTTTTCCCCGCATCAGAGACTGGTACAGCTGCAAACTCCATTTTCATTGCTGGAGAGGTGGTGC AGCTGCAAATCAAACACCATTTTTCTGCTTTCATGGTCTTCACAGCACTCAATCTTCACATTTTCAGACTTCAAATTGCA ATAATTGGATCGAATTCGATCATGTTTCTCGCTCCTGTGTTTGTGCTTTTTGTTGGTGGTATTGCAAATCTGGGTGTGGT TTAGTTTGGGTCGGTGAAATAGTGGCTAAGGAGAGAGAAGAAGCAGAAAACTAAGAGATAAGAAAGTGACACCTAAAAGT TAATATGAGCCAAATGGAGGTGTGAAGGATAAGATAAAAAGGGTCTCAATTCATATAAAAAGGGCCTGCATAATTCATTG GTTAAATTTATTGTATTAGTTTCATTTTTTTCCTTTAAATATCTTATATTAATAAGAAAATTAAGTCATGAGAGTTTTAG TATAAGTTGGGAATAATTGTGAACCATTCACACCGCAACATCCGCAACACCCGCAATACCCGCAACCGTGAAAACTGAAA CGCGACCGCGACCGATATTTAAAACCTTGCTCATATATGTTAGGCCTATATGTTATTGATGATTCAAATCTACATTGAGC TTTGAATCTCCTGCATCATTATTTAAGATGCGTTACTTTTTTGATTATTTGATTTCATTGCTGCCAAATCACTCGAGTAG AATTGTAAGAGATTTGGATAAGCTAAAATATGAATTGGTTTAAGGTTAACTTGTTTATTTCATGTTTTCTTTTTGCAGAC TGACAAAAGCGTTGATCTGTTGCTTCAAGGCAAAATTCCACAAGTTGAGGTAATTCTTTTGTAGTATACTTCTTATTTAG TTTGTGATTGTAAGTCCTTATTTTGCACATAGAAGATGTGCTTTTCTATTATTTTTATTATTAACAATGATACTTTTTCA TTTATTTTAGTTGTAGTTGGATATGCATGGCCTTTTACTATTAATTTTCCTACTGAAAAGGACTATTAGCTTTCCGGTGG AGGCCAGATAAAAAAGTATTACAGTTTTTGTTCAGTTTCTTCACTTTTCTGAAACTATTTAATAGCGAGCAAAATATATT ATTAGCCTTTGAGATTGGATAAACTTGAGTATCATACAAATAAAGAATTGCACCTGGCTTGATTATTCCTTTACTCTTCG GTTTCTTCTCTAGTTCTCCTCTTGAGGTTACTTCTCGGTCATTGTATCATCTTTCCAGGATGTTTCATATTATGACTGAT GTTGTTTTAAACTCTTCTGCAGGTAAGAAAAAGAGATGAAAAATGCAAGGTTGTGATAGAAAAATCTAAAGCGTATGATA AATGCCAAATTTGATAATATAATTCATTTTGAAGCAGTGTAGGATTGTTAAATTGTTTATGAAAAAGTTTAAGATTTTAA AGCTATAAACATGTTAAACATTTTGTAAATTGTGTTTTGTTGACATAACTATGTATAGATTTATATCTTCCACTTTGAAG TTACATCCTTTTCCCCTTCTGTCTTAGCACCGTCTAATTTTCTGTATTATTATTGTCGAAATGCATC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0194900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGCGCCATGGATTTCAAAGACAAAACCACACACCACTCTCAAATTCAACTGCTCGCAAGCCTCGCCGCCACTTCC ACACTCTTCTTCTTCTTCTGCGCAGAAAGACGACCTCCAACCTCTCTTACAGATTCTTCCCTCTGATTTGCATCACAATC TCCTCAATCAAGCAAATCGCCCTCAACTTCTAGAGGTTATTTTGGATTTGGGTCGTTACCCAGAAGCTCGTTACCTAGGA AAACTTGGTAGCCAGTATCTAAGGAACACTGAGGTAACGGTGAAAGAGTTGGAACATGCTCAACAAGCTGTTGGTGAGTT TGGGAGGGACAATAGAGCTGGCATTGAGGGTACGTTGCATCGGATATCCGCGATAAGGAGTAGGAATGGTGCCATTGTTG GGTTGACGTGTCGGGTTGGGAGGGCGGTCAGCGGCCACATTGACATGGTTTATGATCTGCTTCAATATGGGAAGAACATT TTATTTGTTGGAAGGCCTGGGGTTGGCAAGACTACCGTTATGCGAGAGATTGCTCGTGTACTGTCTGATGAATTTAACAA GAGAGTGGTGATTGTTGATACCAGCAATGAAATTGGAGGCGATGGCAATATTCCTCATGCAGCAATTGGGGGTGCACGAA GAATGCAGGTACCTGAGCCATCAATGCAGCATAGCGTGATGATTGAGGCAGTAGAAAATCACATGCCTGAGGTGATTATA GTCGATGAGATTGGCACAGTAGCTGAAGCTCATGCTTGCAGGTCAATTGCTGAGCGAGGCATTATGCTTATTGGGACTGC TCATGGAGAGCAGCTTGAGAATATCATGAAGAATCCTACACTCTCTGATCTGATTGGCGGAATAGCAAGCGTTACTCTGG GAGACGCAGAAGCCAGAGCAAGAAAGTGTCAGAAGACAATTCTTGAGAGGAAAGCACCTCCAACATTTGATTTCGTGATG GAGATGAGAGACAGACACTACTGGATTACACATCAGACTGACAAAAGCGTTGATCTGTTGCTTCAAGGCAAAATTCCACA AGTTGAGGTAAGAAAAAGAGATGAAAAATGCAAGGTTGTGATAGAAAAATCTAAAGCGTATGATAAATGCCAAATTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0194900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVAPWISKTKPHTTLKFNCSQASPPLPHSSSSSAQKDDLQPLLQILPSDLHHNLLNQANRPQLLEVILDLGRYPEARYLG KLGSQYLRNTEVTVKELEHAQQAVGEFGRDNRAGIEGTLHRISAIRSRNGAIVGLTCRVGRAVSGHIDMVYDLLQYGKNI LFVGRPGVGKTTVMREIARVLSDEFNKRVVIVDTSNEIGGDGNIPHAAIGGARRMQVPEPSMQHSVMIEAVENHMPEVII VDEIGTVAEAHACRSIAERGIMLIGTAHGEQLENIMKNPTLSDLIGGIASVTLGDAEARARKCQKTILERKAPPTFDFVM EMRDRHYWITHQTDKSVDLLLQGKIPQVEVRKRDEKCKVVIEKSKAYDKCQI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20953
26 368 343 2.4E-206 –
PANTHER
PTHR20953:SF13
26 368 343 2.4E-206 –
SUPERFAMILY
SSF52540
53 301 249 1.69E-16
IPR027417
Gene3D
G3DSA:3.40.50.300
138 325 188 9.2E-23 –
CDD
cd00009
151 249 99 4.3602E-10 –
SMART
SM00382
156 312 157 9.1E-14
IPR003593
Pfam
PF13604
157 295 139 2.6E-7 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0194900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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