Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0195000 |
| Transcript ID | LotjaGi5g1v0195000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FAD-binding berberine family protein; TAIR: AT5G44400.1 FAD-binding Berberine family protein; Swiss-Prot: sp|P93479|RETO_PAPSO Reticuline oxidase; TrEMBL-Plants: tr|I1NID0|I1NID0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0195000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49016283..49018343) extracted from Lotus japonicus Gifu genome v1.2.
AATTGCAATTTTATTCTATGGCCGGCTACAACGTATGCATAGTTGCTACGTTTCTCCATCCTCTCTTGTCTTAAACCATT TAACTCATTCATTCTCCAGTGCCTATCAACTTCAACTTCTCCTGTTCCAATTATTGACCACCATTTTCCTCAGTCTCACA TTCACAAGTAAACTTAAGCCATGTTCAACTTCCTCCAAAGATTATGCCTTCTATGTTATTGTTTCTTTTTGTTATCTTTT GATGTATCTCTGTGTTCATCTGATTCACTAAGAAACTTCACTTCTTGTTTGGACAATCACAAAATCAAAAACTTTACCAC CTTCCCTTACAATGAACATGACTCTGCTTATAACTACTTCAAGATTCTCAATTTTTCCATTCAAAACTTAAGGTTTGCAG AGCCTAAGCTTCCTAAGCCAATAGCCATTGTACTGCCAGAGAGTTTGAAGCAGCTGCAGAAAAGTGTAGCATGTTCTAAA GAAGCCTCCCTAGAGATCAGAGTAAGAAGTGGTGGCCATAGCTATGAAGGAACTTCCTCAGTTGCTGATGACGACACCCG TTTTGTCATCATTGACATGATGAACTTAAACCATGTTAGGGTGGACATGGAGACTGAGACAGCATGGGTTGAAGGTGGTG CCACACTGGGAGAGACTTACTATGCAATCTCCCAATCAAGTGGTGTGCATGGATTCTCAGCAGGGTCATGTCCAACTGTA GGAGTTGGAGGGCATGTTGGTGGTGGTGGATTTGGGCTGTTGTCAAGAAAATATGGTCTTGCAGCAGATAATGTGGTAGA TGCTCTTCTTGTTGATGCTGATGGAAAATTGTTAGATAAAGAAACCATGGGAGAGGATGTGTTTTGGGCTATTAGAGGAG GAGGGGGTGGTCTTTGGGGGATTGTTTATGCTTGGAAAATCAAGCTGTTGAAAGTGCCACAAGTTGTAACAAGTTTCATT GCGTCTAGGAAAGGCACAAAAAGTCATGTTGCTAAGTTAGTTCACAAATGGCAATATGTGGCACCCAAATTGGAAGATGA TTTCTACTTGTCATGCTTTGTTGGTGCAGGTTTGCCCGAGGCTAAAACTATAGGCATATCAGCAACATTTAAAGGGTTTT ATCTTGGTCCTAGGGACAGTGCTATATCCATTCTAAACCAAACTTTTCCTGAATTGGGTGTTGTGCAAGAAGAATGTAGA GAAATGAGTTGGATTGAGTCAATTGTTTTCTTCTCTGGATTAGGTGATGGAGCCTTGGTCCCTGACTTGAAGAACAGGTA TATGCAAGATAAAGAATATTTCAAGGCAAAATCAGATTTTGTGAGGATCCATGTCCCTCTTGTAGGCATAGAAACTGCAC TGGAAATTCTTGAAAAGGAGCCTAAAGGGCAAATCGTTATGGACCCTTATGGTGGGATGATGCATAATATAAGCAGTGAA TCCATTGCTTTTCCACACAGATCAGGAAACCTGTTTACAATTCAGTACCTGATCTATTGGAAAGAAGCTGACAATGACAA AAGCAGTGATTATATTGATTGGATTAGAGGATTCTATGCTTCTATGACTCCTTTTGTTTCATGGGGTCCAAGGGCTGCAT ATATTAATTACATGGATTTTGACCTTGGAGTGATGGAGAAGATTAGCAATGGTGCTAGTGCAAAAGATGCAGTTGAAAAA GCTAAGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTACGGCAGATTGGTGATGGCCAAGACTCAGGTTGATCCTAGCAA TGTTTTCACCAATGAACAAGGCATTCCTCCCATGTCTTTTACTAGTTTCAATGCTAAAGGGGAGTACAAAAAGGATGCTA TATTTGTTAAAGGGTCTACCATGTTGATTTGAATTATGTGTTATCACTGATTATGTGCATCTATAAGTAAAATGCATTTC ATTTAGATCGAGCTTCAATTGCAGCAAGTAATTTCATCAACCAAGCACTAACCGTATGTCAGTTTTTTAACAAATTAAAC ATGCAATAAATTGCTCCCAATCCCTTTTAGGTTTGATATCTAAACAACCCAACAAAATGTC
CDS sequence (LotjaGi5g1v0195000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAACTTCCTCCAAAGATTATGCCTTCTATGTTATTGTTTCTTTTTGTTATCTTTTGATGTATCTCTGTGTTCATC TGATTCACTAAGAAACTTCACTTCTTGTTTGGACAATCACAAAATCAAAAACTTTACCACCTTCCCTTACAATGAACATG ACTCTGCTTATAACTACTTCAAGATTCTCAATTTTTCCATTCAAAACTTAAGGTTTGCAGAGCCTAAGCTTCCTAAGCCA ATAGCCATTGTACTGCCAGAGAGTTTGAAGCAGCTGCAGAAAAGTGTAGCATGTTCTAAAGAAGCCTCCCTAGAGATCAG AGTAAGAAGTGGTGGCCATAGCTATGAAGGAACTTCCTCAGTTGCTGATGACGACACCCGTTTTGTCATCATTGACATGA TGAACTTAAACCATGTTAGGGTGGACATGGAGACTGAGACAGCATGGGTTGAAGGTGGTGCCACACTGGGAGAGACTTAC TATGCAATCTCCCAATCAAGTGGTGTGCATGGATTCTCAGCAGGGTCATGTCCAACTGTAGGAGTTGGAGGGCATGTTGG TGGTGGTGGATTTGGGCTGTTGTCAAGAAAATATGGTCTTGCAGCAGATAATGTGGTAGATGCTCTTCTTGTTGATGCTG ATGGAAAATTGTTAGATAAAGAAACCATGGGAGAGGATGTGTTTTGGGCTATTAGAGGAGGAGGGGGTGGTCTTTGGGGG ATTGTTTATGCTTGGAAAATCAAGCTGTTGAAAGTGCCACAAGTTGTAACAAGTTTCATTGCGTCTAGGAAAGGCACAAA AAGTCATGTTGCTAAGTTAGTTCACAAATGGCAATATGTGGCACCCAAATTGGAAGATGATTTCTACTTGTCATGCTTTG TTGGTGCAGGTTTGCCCGAGGCTAAAACTATAGGCATATCAGCAACATTTAAAGGGTTTTATCTTGGTCCTAGGGACAGT GCTATATCCATTCTAAACCAAACTTTTCCTGAATTGGGTGTTGTGCAAGAAGAATGTAGAGAAATGAGTTGGATTGAGTC AATTGTTTTCTTCTCTGGATTAGGTGATGGAGCCTTGGTCCCTGACTTGAAGAACAGGTATATGCAAGATAAAGAATATT TCAAGGCAAAATCAGATTTTGTGAGGATCCATGTCCCTCTTGTAGGCATAGAAACTGCACTGGAAATTCTTGAAAAGGAG CCTAAAGGGCAAATCGTTATGGACCCTTATGGTGGGATGATGCATAATATAAGCAGTGAATCCATTGCTTTTCCACACAG ATCAGGAAACCTGTTTACAATTCAGTACCTGATCTATTGGAAAGAAGCTGACAATGACAAAAGCAGTGATTATATTGATT GGATTAGAGGATTCTATGCTTCTATGACTCCTTTTGTTTCATGGGGTCCAAGGGCTGCATATATTAATTACATGGATTTT GACCTTGGAGTGATGGAGAAGATTAGCAATGGTGCTAGTGCAAAAGATGCAGTTGAAAAAGCTAAGGTTTGGGGTGAAAA GTACTTCTTGAGTAACTACGGCAGATTGGTGATGGCCAAGACTCAGGTTGATCCTAGCAATGTTTTCACCAATGAACAAG GCATTCCTCCCATGTCTTTTACTAGTTTCAATGCTAAAGGGGAGTACAAAAAGGATGCTATATTTGTTAAAGGGTCTACC ATGTTGATTTGA
Protein sequence (LotjaGi5g1v0195000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFNFLQRLCLLCYCFFLLSFDVSLCSSDSLRNFTSCLDNHKIKNFTTFPYNEHDSAYNYFKILNFSIQNLRFAEPKLPKP IAIVLPESLKQLQKSVACSKEASLEIRVRSGGHSYEGTSSVADDDTRFVIIDMMNLNHVRVDMETETAWVEGGATLGETY YAISQSSGVHGFSAGSCPTVGVGGHVGGGGFGLLSRKYGLAADNVVDALLVDADGKLLDKETMGEDVFWAIRGGGGGLWG IVYAWKIKLLKVPQVVTSFIASRKGTKSHVAKLVHKWQYVAPKLEDDFYLSCFVGAGLPEAKTIGISATFKGFYLGPRDS AISILNQTFPELGVVQEECREMSWIESIVFFSGLGDGALVPDLKNRYMQDKEYFKAKSDFVRIHVPLVGIETALEILEKE PKGQIVMDPYGGMMHNISSESIAFPHRSGNLFTIQYLIYWKEADNDKSSDYIDWIRGFYASMTPFVSWGPRAAYINYMDF DLGVMEKISNGASAKDAVEKAKVWGEKYFLSNYGRLVMAKTQVDPSNVFTNEQGIPPMSFTSFNAKGEYKKDAIFVKGST MLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| PANTHER | 12 | 547 | 536 | 2.2E-275 | – | |
| PANTHER | 12 | 547 | 536 | 2.2E-275 | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Phobius | 28 | 563 | 536 | - | – | |
| Gene3D | 30 | 136 | 107 | 6.7E-34 | ||
| SUPERFAMILY | 62 | 253 | 192 | 6.54E-46 | ||
| ProSiteProfiles | 76 | 252 | 177 | 19.816 | ||
| Pfam | 80 | 218 | 139 | 2.5E-29 | ||
| Gene3D | 141 | 537 | 397 | 1.1E-147 | – | |
| Gene3D | 255 | 469 | 215 | 1.1E-147 | – | |
| Pfam | 473 | 536 | 64 | 8.6E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi5g1v0195000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…