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LotjaGi5g1v0198900.6

Overview

Field Value
Gene ID LotjaGi5g1v0198900
Transcript ID LotjaGi5g1v0198900.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Endosomal targeting BRO1-like domain protein; TAIR: AT1G73390.1 Endosomal targeting BRO1-like domain-containing protein; Swiss-Prot: sp|P26955|IL3RB_MOUSE Cytokine receptor common subunit beta; TrEMBL-Plants: tr|A0A0L9TYL6|A0A0L9TYL6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0198900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:49634471..49640008) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGGTGCATTGTGTCCTCTCAAAAGGATTCTGGGGGAAATAGAAGGAAGCCAGGGAGTATTGGAGAAGTTTCTGTAAA TGTTCCCGGTCTAAGAATTCCTAAACCTGTTGATTTTGCTCACTCACTTGGTGACTGCTTGTCCAAGAGTTTAGTGGAAC GCCTATCAGCACTTAGAACTCGTATAGTTGTAATGGCCGGCCAAGAAGGTCCTACAATTACAAGAACAAAAAGAAAAAGT GCCACCCAGCATGGTAAGTGTTAGCAAGGATGAATCATTTTTTAATAAGTAACTTGCGCTAATTTAATGATGCATCACCC AATTTCATCCTCAGGTGGTTCAACACTGGCTGATCTTCTGCAAGCTCTTGAAGACTACTTGCCAGTACTTTTGGGATTAG TCAAAGATGGTAAAGCATGCTTTTTTCTATTCATACTTGATGTATGTTCCCTCCTCAACATGTCCTGATTAATTCCTTGT CTTTGTTTTGCAGGAAGCCATTTGCAATTCAAAGTACAATTTGTTTGGGTGAATCAGGAGGATGATGCAGAGGTAGTTCC CATTTTGGTAATGAATACAGATGTTTTATGTTTTAATATTTATTTCTGTACACAAGAATACTGACCATTTTTTCTCTCCT CTCCACTTTTCCGCCCTTTTTGGTGCTATTGACACTTTTTTGCAGGAAACAGCTATGTCTAATGCTTGGTACGAAGTGTT GTCAGTTTTGCACTTGATGGCAATGCTATTGTTATCACAGGCTAATTTATTACTTCTTCCAAGAACATCCTCTGATGGTT ATCAGCCAAAAGTAACAGAAGGTGAGTAATACTGAGTTTTTTGGTAGTTGTCAAAATATTCCTTGTTGCTTGCCCCAAAA TTTTATTGCTTATTATACCCAACAACCAAAATACATTTTATCGTAGGATAGTACTTTGGGCCTCCAATTGACTCCCCCCC CCCCCCCCCAACTGATTGAGGTTTTGAAGATTAACTAAAGCTAAACGTAGAATATCCTTGAGGTTTTCTATTAATCTTGT TCTTCTGTGTTTATGATTATTTTACTACATGGAACATTTACTGATTATTTAAATTACCATTATATTTGATTCACTGTCAA AAAATATGACAAAATGTGTTTTAATTACCAGTAATTTTTAATTTGCCTCATTTATTCGTGAACTTTGAAGAAAGATAACC GTACTTCCCTTTTTGTTGCTCTTTGTCTTCTCATGTTTGGTGGATCCTTCCATTAAGTAGACCTAACACACGTGCATTGC GTGTGCTGTACATAATTCTCTTCATATCTGCATTTTAGATTGGAAATTTTATCTTGCCTTAAACAGAAGAATACAAAGTG TACTGTTTTTTCTTTTCAAGTCTTGGTTATATAATGCGGTAGCTGATTAACTGGAAAACATATTCTGCTGTCTTATATAA TACTTCTATTTCTGACAGTGTTGCTTCATTGATTCCCCTATTATGTTTTCCTACTTTGAAGTTTGAACTTTTGGTGATTA CTAATTACTAACAGAAAACAGACGAGCTTCTGTTGATATCTTCTTAAAGTCAGCTGGGTATCTGGACTGTGCTGTCAAGC ATGTTCTCCCACAGTTGCCTGAAGAGCTCAGGTATATGAATATAAACAATGAATTGACTATCACACTGCTGTGTAGTCTA AACAATGTTCTCTTTTTTTATTTCTCTTCTCACTGTTGGTTATGGGTTTTAGGAGAAATTTACCAGTGGACCTTGCAGAA GGAGTTCTTCGAGCACTCTGTCTACAAGCATTGGGACAGGTATTAATGTTTTCTATTTCATGGAGTTACCAGATGAATTT CCTCGCATCTTGTAGTTCATTCTGCATGCTTAAATAGGAAGATACACAGCAGAGAATTAAAACTGAAAACCTATCATATT TAATGGCTAACCTAAAACCAATGGGTCATGTAACTTTATTCAAGGTGGAAGCTTCTTGTTTACTATTCTTGTCACGAATT TATGTTGAACATTAAGTTAACGACTACTAGAAATCACTTTGCTGGGGGTTTATTTATGTATCTAATCTAATAATTGACAC CGGACTTAGGCCTAACTTAACCTGAAAAGCCAGTTTAATGGATGGAGATTGCCCAAGTCACTGCTAGTGGTACTAAGCCC ATATACCCAAACAGTGAGATCTTTGTACACCAACCTCACACCTAGGACTGGAATCTAGGCCATGAAGTTTGCAAGATTGG ACATATGCGAGTGGGCTAACATTAGGGTCGGGACAACCCCTGATATCATATCATAATACAACTTCTTCAAAACTTAAGTT GTTAGGTGAATGCACGTAACTGGCTTTACACCTTTTATATCTATGACATGGTCATTCAAAAGCTTTCTATGCTTAAAACA TGGGAAATGCATAAGGTCCTGAAATTTAAGTTTTATTTAAAAGAAAAAGATGGCGGCAAGGATTAAACTGTTGATACATT GTCATGGCCATGGAGGCTTTGGTACTTATAAACCAACAGGCCATCCCCACTTTAAAATTGATTTCTTCATGTTTAAATCT GTCAGATTGGTTTTTATGCATTCCCCCTCATATGAAAGCCCACTATGCATCACATACTGTTAGAAACTACTCTATAGTCT AATACTAAGCTTTCAACGACGTTTCTAGGGTAGTTTAGTCGTCAAATGTTGACTGTGGACATAGGACCAGTTTTAAAGTG GACATCGCCTGCTGCTTAATAAAGTTTAGGTCTAAAGCTAAAGCCCAATTGTCAGACTAGTTTTGTCTTACTTTTTTTTT GTTCTTTTATGAAGATAAAACTGATATTAGAAGAAAGAGGGATAATGAGCCCAGATTTTCACATGCATAGTGCCAGATAC ATTCTAAAATGACCTGAGAGCCATTCAAATAGAAACTCTTATAGTCGAATTCTTTTAGTTCCACTGGTATGTAAAATGTT CATTTTATTCGAGGGTGAAAATTAAAGCTATAAAGGGATTAAAAGGGGACATTGTCCGATAGCTGCAGTTATCTTGATTT AAGTTTAAAGTCCTATATTTTGTCTTAATAAACATATTAACCATGGTTTTTTAGTCTAAAGGTGTATCTTTTCTATTAGA GAATGTTTGTGATTCAATACCATCAGACTTGTGCATATGTGACTATCCCATTTGTGGTGGCCGAATCCCATGTCAATTGG TACCAATGTTACATAGAAAACTGGAGAAGGGGAACAAAATGATAGAAACCTTCATTCACTCTCTCTCATATCTATTTTTG GGTAAAATTGTTATTCATATCAATATTTTAATAGGGTGTAGATATCCAACTTGGAATGGCAATTGATAGTGCCAAAGCCA CACTTGCTGTGAAGCGTAGACTTGCATGTGAGATGGTGAAATATTGGCAACAGGTACAAATGTAAAATTTATTATCGTTA TAATACCAGACATTGATAGGCATATGTAATGAGATTTTGGGAACTGTCATATTTTACTGCTGGTGCATTCTTCTGAATGC TTTTAGAACTCTGAAGTCTGAACCTCAAACTTTAATTTTTGGTATAAATTTTCAAATTTAATTTAATATCTGTAGGATTA AAGAGAAGCTTGTTTGAATTATATAAGTATTAATAATTTAAAATGTAGGCTGAAATGCACTTTTGGACCCCCAAGTTTAC ATTTTTTGCGATTGTTGACCCTGGTCTTATTTTTCTACGAAACGAGACCCTCTCCAGGCAATTTGTATGCAGAAGATGGC TGGTCTTTTTGCCTGGAGAGGGTCTCGGTTCGTAGAAAAATAAGATCAGGGTCAACAATCGCAAAAAAATGTAAACTTGG GGGTCCAAAAGTGCATTTAAGCCTAAAATGTAGTGAGGATCATTGTGTCCTGTTGTGAAATCTTTTTCTGGATTTGTATT GCGTAAGTTTTTTCAGTATGACCTCTGTTCTGTGGATGAATTTGTTGGTTTCCACTAGTCTTGGTTATTTCTCAATTGAT GCCTTGTTTTATCCCAGATCTCTGATGGGATCTCTAACTTGTTCCGTTGGTTTTATATTTACAACATTTATTTCCGCAGG AAAATCCTTGTTTCAATTCTGTATATGCTGTATGTGCATTAGTAAGTTAACCTTACTTTGTTTATACCGTTTACTTTTCA GGCTCAAGATAATATAATGAACCTTCCTTTAGCTAATGGTTGGGGGAAGAAACATATACTTTATGTTAAATGGAAACATG TTGAAGCAAAGGTTTGTGTTTTTTCTGCCTTCTGGTTATTTGCATCTTGCTATTTAATACTCCCTCCGTTCCTAATTATA AGACCTAATACAAAAAATAGCGCTTATTAAGAAAGTATTAAATGTGTCTAATTAGTGTATTGGTTTTTTAAAAATGCATA CATTCTTCCATATTTACCCTTTGTCATTTTCTCTCACTAATTAATGATAGGTGGTAATTAAAACTTTGAAATTGAAAACA CACAATTAATGTGAGGGGTATATATGGAAGAGTATAATACTTTTTGCTAGATTATTGTAAAAGGTCTTATATTTAGGAAC ATGAAAAATCTAAAACTAGGTCTTATAATTAGGAACGGAGGGAGTATGTGTTATTGTATAGTAGTATGAGTTGAATGGAT TTTCCTTGTTTACTGATTGCATTATGCCAATAAATGTTGGAGTATAAATTGATTGATATAATGCATTGTCCAAGATAAAA TATGGAGCTGGTAACTTGAGAAATTGTGAGATTAAATTTCTATGTTTATTATGAGACCATGTTTAGTTGGAAGTGTCTTT AGGGAGATTTAGTTAATTGATCATGACTCATCTGCTTTTGTATAGTGACTGAAAACTAAAATACTTGGTCCAGCTGATGC TGATGTTTTCATTGAAGAGTTGAAGAGGATGATTAAATATTTTCTAAATTCTAATGATTAATGATCCACAATTACCTTCC CTGGGCCATATTTTACAATTGCTAGCTTTTCTCACATTCTAGGTACAGACCCGAACCTGGTAAATGAATTAGGGACCCTA GAATTATCATGTGTTATGCTGTTCAATTATATCATTAGTTTTCTTCTTTTCTCTTCTGTCATTGACTTGGTAGTGGGTTT CAACTTGGTTAATGAAGTGCTCAGCTGTTCCCATTTCTAGACTCTGACAATAATATGCTGAAATCATTTGATTTATTCTT ATTTTATATGCCCTTAATCCTAGTTGATGAGACCTAAGTCTAACTACCACCATAAGCCTATATAGTTTCTTTTGCTTTCA TCATATTGATGTAAAGTTCAGGAATTGAGTATAGAAGATGCATTCAACTGAAGCAACTGATGTAGATTAATTAATATGTT TATTGTATTGATTTACCAGTCTGCGGCATATTACTATCATGGTATGATTCTTGATGAGGGAAATACAGAGAAATCTCAAG GGATGGCTGTAGCTGCTCTGGAAGCAGCTGACGATTATTTCAAAGAAAGTAAGAAGCTGTGTGAGGCATTCAATGTGGCA CCCCCATTATCAAGGTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0198900.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGTGCATTGTGTCCTCTCAAAAGGATTCTGGGGGAAATAGAAGGAAGCCAGGGAGTATTGGAGAAGTTTCTGTAAA TGTTCCCGGTCTAAGAATTCCTAAACCTGTTGATTTTGCTCACTCACTTGGTGACTGCTTGTCCAAGAGTTTAGTGGAAC GCCTATCAGCACTTAGAACTCGTATAGTTGTAATGGCCGGCCAAGAAGGTCCTACAATTACAAGAACAAAAAGAAAAAGT GCCACCCAGCATGGTGGTTCAACACTGGCTGATCTTCTGCAAGCTCTTGAAGACTACTTGCCAGTACTTTTGGGATTAGT CAAAGATGGAAGCCATTTGCAATTCAAAGTACAATTTGTTTGGGTGAATCAGGAGGATGATGCAGAGGAAACAGCTATGT CTAATGCTTGGTACGAAGTGTTGTCAGTTTTGCACTTGATGGCAATGCTATTGTTATCACAGGCTAATTTATTACTTCTT CCAAGAACATCCTCTGATGGTTATCAGCCAAAAGTAACAGAAGAAAACAGACGAGCTTCTGTTGATATCTTCTTAAAGTC AGCTGGGTATCTGGACTGTGCTGTCAAGCATGTTCTCCCACAGTTGCCTGAAGAGCTCAGGAGAAATTTACCAGTGGACC TTGCAGAAGGAGTTCTTCGAGCACTCTGTCTACAAGCATTGGGACAGGGTGTAGATATCCAACTTGGAATGGCAATTGAT AGTGCCAAAGCCACACTTGCTGTGAAGCGTAGACTTGCATGTGAGATGGTGAAATATTGGCAACAGGCTCAAGATAATAT AATGAACCTTCCTTTAGCTAATGGTTGGGGGAAGAAACATATACTTTATGTTAAATGGAAACATGTTGAAGCAAAGTCTG CGGCATATTACTATCATGGTATGATTCTTGATGAGGGAAATACAGAGAAATCTCAAGGGATGGCTGTAGCTGCTCTGGAA GCAGCTGACGATTATTTCAAAGAAAGTAAGAAGCTGTGTGAGGCATTCAATGTGGCACCCCCATTATCAAGGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0198900.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGCIVSSQKDSGGNRRKPGSIGEVSVNVPGLRIPKPVDFAHSLGDCLSKSLVERLSALRTRIVVMAGQEGPTITRTKRKS ATQHGGSTLADLLQALEDYLPVLLGLVKDGSHLQFKVQFVWVNQEDDAEETAMSNAWYEVLSVLHLMAMLLLSQANLLLL PRTSSDGYQPKVTEENRRASVDIFLKSAGYLDCAVKHVLPQLPEELRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAID SAKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGKKHILYVKWKHVEAKSAAYYYHGMILDEGNTEKSQGMAVAALE AADDYFKESKKLCEAFNVAPPLSR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23032:SF9
1 344 344 2.0E-218 –
MobiDBLite
mobidb-lite
1 21 21 - –
PANTHER
PTHR23032
1 344 344 2.0E-218
IPR038898
CDD
cd09034
23 337 315 1.78663E-78 –
SMART
SM01041
25 344 320 4.1E-20
IPR004328
ProSiteProfiles
PS51180
29 344 316 11.134
IPR004328
Gene3D
G3DSA:1.25.40.280
72 343 272 3.5E-38
IPR038499
Pfam
PF03097
90 331 242 5.0E-14
IPR004328

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0198900.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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