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LotjaGi5g1v0203800.2

Overview

Field Value
Gene ID LotjaGi5g1v0203800
Transcript ID LotjaGi5g1v0203800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin carboxyl-terminal hydrolase; TAIR: AT1G65650.1 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1; Swiss-Prot: sp|O04482|UCH2_ARATH Ubiquitin carboxyl-terminal hydrolase 2; TrEMBL-Plants: tr|I1NIJ5|I1NIJ5_SOYBN Ubiquitin carboxyl-terminal hydrolase; Found in the gene: LotjaGi5g1v0203800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:50431556..50432752) extracted from Lotus japonicus Gifu genome v1.2.

AGGGCTTGGCGAAATCAATTTTTCTTCCAGTACAATTTTTATGTATGCTATCCTCATGCTAGATATGTCTTGGCAGGTTG AGGAGCTGTATTCATTGGACATTGACTCTCTCGACAGCCTTAGGTTGGTGTACTATCTCAGCTAGTTTTGAACTTGTAAT GACAGTCAGTGGTTATTATAATTAATTAGTAAACATTTGCCTTCTCTCTTTTTATGTGGATTCTGCCCTCAATTACAGGC CTGTATATGGGTTGGTTTTTCTTTTCAAATGGCGTCCAGGAGAGAAGGATGATCGTGTTGTAATAAAAGATCCCAATCCT AATTTGTTTTTTGCTAGCCAGGTTTTTTTTCAATAACTTAAAAACCAATATCATAACTGATTTGTCATTTTATGGTTTAC TAAGCTAAGTGGTCTTTTTGTAGGTAATCAACAATGCTTGTGCAACCCAGGCGATCTTGTCTATTCTTTTGAATTCACCA GATGTTGACATTGGTCCAGAGTTGACAAAATTGAAAGAATTCACCAAGAACTTTCCACCTGAACTCAAAGGTTTGGCTAT CAATAATAGTGATGCCATACGTTCTGCCCATAATAGCTTTGCAAGGCCTGAACCTTTTGTCCCTGAAGAGCAAAAGACTG CTGGCAAAGATGATGATGTTTACCATTTTATAAGCTATATACCTGTTGATGGAGTACTATACGAGCTTGATGGGTTAAAG GAAGGTCCTATCAGCCTTGGTCAGTGTTCTGGTGGGCAAGGTGATTTGGAATGGCTGAAGCTGGTGCAACCTGTGATCCA GGAACGCATTGAGCGGTATTCCCAAAGTGAGATAAGATTTAATCTCCTGGCAATCATCAAGAACAGGAAAGAGATGTATA CTGCCGAGCTAAAGGAACTTCAGAAGAGGAGGGAGCGCATTTTGCAGCAGCTGGCTGCATCAAAGTCTGAGAGACCCGTG GACAATAGTTCTGAGGAACTGAACAGTTCTCTCTCTGTAGTGAATGCTGGGATTGAAGCTGCTACTGAAAAGATTTTAAT GGAGGAAGAAAAATTCAAAAAATGGAGAACAGAAAATATTCGCAGGAAACACAACTACATACCCTTTTTATTTAACTTTC TAAAGCTTCTTGCTGAGAAGAAGCAGTTGAAGCCCCTCATTGAGAAGGCCAAGCAGAAGACAAGCAACAGCCAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0203800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTATGCTATCCTCATGCTAGATATGTCTTGGCAGGTTGAGGAGCTGTATTCATTGGACATTGACTCTCTCGACAGCCT TAGGCCTGTATATGGGTTGGTTTTTCTTTTCAAATGGCGTCCAGGAGAGAAGGATGATCGTGTTGTAATAAAAGATCCCA ATCCTAATTTGTTTTTTGCTAGCCAGGTAATCAACAATGCTTGTGCAACCCAGGCGATCTTGTCTATTCTTTTGAATTCA CCAGATGTTGACATTGGTCCAGAGTTGACAAAATTGAAAGAATTCACCAAGAACTTTCCACCTGAACTCAAAGGTTTGGC TATCAATAATAGTGATGCCATACGTTCTGCCCATAATAGCTTTGCAAGGCCTGAACCTTTTGTCCCTGAAGAGCAAAAGA CTGCTGGCAAAGATGATGATGTTTACCATTTTATAAGCTATATACCTGTTGATGGAGTACTATACGAGCTTGATGGGTTA AAGGAAGGTCCTATCAGCCTTGGTCAGTGTTCTGGTGGGCAAGGTGATTTGGAATGGCTGAAGCTGGTGCAACCTGTGAT CCAGGAACGCATTGAGCGGTATTCCCAAAGTGAGATAAGATTTAATCTCCTGGCAATCATCAAGAACAGGAAAGAGATGT ATACTGCCGAGCTAAAGGAACTTCAGAAGAGGAGGGAGCGCATTTTGCAGCAGCTGGCTGCATCAAAGTCTGAGAGACCC GTGGACAATAGTTCTGAGGAACTGAACAGTTCTCTCTCTGTAGTGAATGCTGGGATTGAAGCTGCTACTGAAAAGATTTT AATGGAGGAAGAAAAATTCAAAAAATGGAGAACAGAAAATATTCGCAGGAAACACAACTACATACCCTTTTTATTTAACT TTCTAAAGCTTCTTGCTGAGAAGAAGCAGTTGAAGCCCCTCATTGAGAAGGCCAAGCAGAAGACAAGCAACAGCCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0203800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYAILMLDMSWQVEELYSLDIDSLDSLRPVYGLVFLFKWRPGEKDDRVVIKDPNPNLFFASQVINNACATQAILSILLNS PDVDIGPELTKLKEFTKNFPPELKGLAINNSDAIRSAHNSFARPEPFVPEEQKTAGKDDDVYHFISYIPVDGVLYELDGL KEGPISLGQCSGGQGDLEWLKLVQPVIQERIERYSQSEIRFNLLAIIKNRKEMYTAELKELQKRRERILQQLAASKSERP VDNSSEELNSSLSVVNAGIEAATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKLLAEKKQLKPLIEKAKQKTSNSQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.532.10
5 210 206 4.2E-77
IPR036959
PIRSF
PIRSF038120
8 319 312 8.9E-114
IPR017390
PANTHER
PTHR10589:SF30
10 316 307 4.4E-142 –
SUPERFAMILY
SSF54001
10 209 200 6.87E-60
IPR038765
Pfam
PF01088
10 192 183 1.2E-57
IPR001578
PANTHER
PTHR10589
10 316 307 4.4E-142
IPR001578
CDD
cd09617
12 206 195 1.49901E-111 –
PRINTS
PR00707
26 38 13 6.7E-8
IPR001578
PRINTS
PR00707
62 79 18 6.7E-8
IPR001578
PRINTS
PR00707
138 149 12 6.7E-8
IPR001578
PRINTS
PR00707
154 164 11 6.7E-8
IPR001578
Coils
Coil
204 238 35 - –
Gene3D
G3DSA:1.20.58.860
211 299 89 4.1E-23 –
Coils
Coil
259 279 21 - –
Pfam
PF18031
259 304 46 3.1E-19
IPR041507

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004843
Molecular function Thiol-dependent ubiquitin-specific protease activity Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein.
Subterm of
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0203800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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