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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0204000 |
| Transcript ID | LotjaGi5g1v0204000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | R3H domain protein; TAIR: AT3G56680.1 Single-stranded nucleic acid binding R3H protein; Swiss-Prot: sp|Q8MSX1|ENC_DROME Protein encore; TrEMBL-Plants: tr|I1LBV3|I1LBV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0204000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50468786..50473526) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAGATAAATTTTGTAAAAAATTACATATGAAGGAAAAAAGGGTGGGCAACACAAAGACGCAGCCATTGATTGAGAG CATCTGAAGCATTCGAATTGAGAACTTGAATTGGGAACCTGAACCCTAATTTTGCCATTGACTTTGTTCAATATGAGTAT GACCCAATTCGCCATGGTACGCTTTTTCGATTCTCTTTCTTCCTCTCAATTTACATGGATTATGCTCTGCTGAATTTTAA TTTTTGTGATCCTATGCCCTATTTTTTCTGGGTTTATTTTTTCCTTTTTTATTGTTCTTTTAGTGGTAGTTAAATGCTCT GTTTGATGTAAAGTTTCAATTTTTAGAACCCTAAGCTGAGTTTTAGTCCCAAGCTTGTTCCTTTTTTCATGTTAATTGAA GGATTTTTTAGAGGGTAAATGCTTGAGTGATGAAATTCAATGTTGTGTAAACTTGATATCATGTCTGATGATGATTTTGC TTTGCCTTAGGCCCCGTTTGGAAGAGCTTATCTGATAGCATAAGCGCTTATGCCCGTGTTTTGAGCTTATTTTCCTAAGC TACTCAGGATAGCTTATGAAAAAGAGCTTATGCTTATATATAGCTTATTTTCAATTTATTCCAATAGTTTTTTTAAAATA GCTTATGAATAAGCGCTTATGACCATAACCGCTTAATTAAGTTGTTTTCCCAAACGGGACCTTAGTTTATTTGAACTGGC ATGACCCTAAGGAGCATATCTTTTGCCATACTATGTTTTTGTTTTTGAAGTTTCAATTGGTTTTGATACTAATAATGTTT ATATATCTTAGGTTGAGGAGTTGGCTTTTCTTGTGAAGGACAATCTTCCTTGCAAGCATCTAGTTCTCACAATGGAGGAA GTCTTAGTTAACTTTCTCGAGGCTGATGACACAAGGTAACATTTATGATGGGGTTTGAATAGTGTTTAGTCCAAAAAATT GCTCTAGACCGTGGAAGTTAGTTAAGGAAACTATTAATGTTGGACTTGTCTCTACTAACATTGGCGTAGATGAAGTTGAA CACTCTGTTTCTTGCTCTTTTTCCTTTCTTTCTATTTTTGTATCTTGATTACAAAGGACAATGAGGAGGGATAATTTTAA ACAACGGGGTGATGTTTTTCTCCGAGTATCTCTCTTTAATAAACTGAACTTATAAATTTGTGTGTGTACTATGTGTTTAC CACCCATGGCCCCTAAAAGAAACGAAAGTAGTTTAATACATTAGAAATTATAAAAATACATTGCAATGTAATATGGTTTC AAAATGAATGTAATGATTTTTTTAATTTAGTTGTGTAAGTTCTTATAAGAAAACAAAAGGGTTCATTTATTATGTGCATA AAAAATCAGCATTTTTAGCATGGCTGTTTGCTTGTTGATTTCAAAACCATATAGTACATCTCTTACCCAGTTTCTCTTGG ATTGGAATAGAAATTATCTTTAGTGTAAAAGAATGGGCTTTTGGAAAGCAGCTTTACGTTTGATTGGTCATTTGTAGAAT ATGATTCTAGCTCGTTTTTGTGGCTGTTTAGCTTATGTATGCTGTGGCAAATAGTTGTTTCCCCCCTCTTAAGTAGAGGT TAAAAGCTTCCTTAGTAGTTGGTACCATATAATATATTTCTTAATACCTATTTCTATTGAACTATAGTTCAGATGGGATC TTGGAATTGGAGCCAATGAACTCTTACAACCGTCTTCTCTTACATCGCCTTGCTGAGATATTTGGGTATTTTTCTTATGA AGTTAATTTTTTCTAGTCAATTTCAAAGGTTCTTTCTGGTTTTCATTTTAAATCTGCATCTAGTTTTCTTTTATTTGATG ATTGCATAACTGATGCCAGGTTTGCGCATGAATCTGTTGGTGAAGGAGATGATCGGCATTTGATTCTTGAGAGATGTCCA GATACATCTATGTAAATTAACTTCCCTCTATTATCCCTCCTGGTCCCTTTTATATGAATCATAATTTGGATTACTTTATT TTTTTATTATTTCAGCTATTATTTTAAATGTTTTTTTAATGAAATATCCTTTATATATGGATGGATTGCAGGCCTTCTAT CCTTGTCAGTGATATTCTATGGAAATATGATGAACCTCAATCTTTGATGGAGTCACACGACTCGCATCAAATATTAAGGA GAAAAGAAGCCTCTCCAGGTAATACATGCTACTGATTCTTTTATGTCCGTTACCGCGGTACATCATTACAATATTGGGCA TACAAGTATAATCCAACATTACAAGAATACATGACACATAACTCATGTGGTAAAGCTTGAATAGAAATAGAATACTGATG TAGAAGTAAATGGAAACTGATTGTTGAGAGGCATATGAGCATCCAGCAAACATAAACATATGAGAGCACTGTATTGGTGA ACATTTTGAAGCTACAGCTACACAATTGGATGCCAGAAGTATCCGTTTGAGTGTTGTGTTCCTTTGAATGAGTGTTTTGT TTGCAGATCTGTTCATGGAAAGCAGTACCATTGCATAGACCTTTAGTTTTTTTAACAATGTAGATATTTGCACTGTTTTC TGTGCCTTAACTTGTGTTATATTTTTTAGTTTCACAGACAAACGCAGCATCCATTCAACAGTCGCTGGAGGAAAGAAAAG CAGCTTATTTTGCTGCTCGTGAGCGGATTTTTTCTCTGAGTTTGGAAGAGGGGAAAGAGCCTGGTGAGCAAAAGCCACGA ACTGTGCCTGTGGTTGCCCGCCGTATGATTGCGCATGCATTAGGTCAAAGGATCCATACGAGGAATCAGAATGACTTGGT TAGTGATAGTATGAAGGATAAAGTGCTCACAGATGAATTAAATGGTCAAGATAAGACTAGTGAGAAGTCTAATCTCATGA AGGATTCTGAAGAGTCCTTACACCTGAGAAGAAACTCAAATAGCAAAATAAGAAACACAGGCAGTTCTAATGCTGGCTCG CACCATAAAAGGAATGATCAAACACCTGTTGAGAAACATTTGCCACAATTCTCTCCAAATAGAAAACAAGGGCAAAGTGT GAGTAAAGAGGACATGAAAAAGGAGAACTTAGGAGCTGCGAAGAGAATGTTTGCTCATGCTTTGGGAGTACACTCTGGAA AGGATGGTTCTGTTGCTAGAAATAGAAATGGAGAAATTAATAAGAATTAGAACAGAAGGTTCTTAAATCTTGAAACAAGA ATCGTATTCTGTTGTTCCAAAGGGACCTTGGCAGGTGCTCCCCAGATTCCAATCACAGTATGGAGATGAGTAAGAAGCGT GTTGTACTCAAATTCTGAACAATAATCTCAGGAGGTTCATGCAAATCGCTTAGTTCTTCCTTGATTGTGCTGGAGTAACT TGAAGCAGTCTAGTGTCGAAACGCGAAAGACATCCTGAAAGAACTATCTAGGATCTTGTTTGACCTCTTTCGGCATATGG AGGAAGCTGAGTGAATAGGTAATGGTGTTATGGCCCGTTATCCATGTAAGATATGCAGTTCCAATTACTTTCTTGTCTGT TTATTTTGTTCAGTGAAAGTATACATTATGGTTGTTCCCAGGACCAGGGATACATGATTTCACTATCCTGGAAAGTGTTA TGTATAATAGGGCGAGTTTGTTTGAAGTTATAGGATCATATTCCCAGGAACGATATTTATTCCAAGTAATCTCATTGCCA AGAATGTCATTCCGGGGTAAAATGAAAAATCTGTTTGGCTTTTGTTTATTATTCCTGGGAAGAGTTTATCGTGTTTTGAA ATTTCCAGGTTTCTCCTTGTTTCTCTTCTGCTTCTAAGTTGGCATTTACGTTATTTGTTACAGAATTTTAGAGGTAATGA AATTATGTATTTTTGCTGTATGTAACTCGAGATGTTCATGGAACATACAATCAAATCAGCATTGACAAAAGATGTAACAA GGAATAACACGAGTATAAAAACATAAGGAAGGATATACAAGCGTGATTTTCTATTACATGAGCTGCTTATGGATTATTCT ATGTTGCATTTTGAGCACATAAAAATAGTGTTTAACAACTACCATTATGGATACCATGAGATACTGTGGAAGCAAGAGTG TGCACTGTGCAGTGACAACATTGGTGATGGCAGCGGTTCTGCTACATCATTATTTAAATTTATATAAAGTCTAACATCTA AGTAAAAAACTGCTTTCCTCATGAAAAAGTCATTTACAATGTGTTAGCTCGAGTTTTCACCAAGGGCGAAAAGCCAAATG GGAGGCCAACGTCGAGAAAATGGTGACATTTATGGCCAATACCAGCTTCAGAAATAGCCAAGTGTGAAATAGTGACATTC TCGACAAGCGCATATCGATTGAAGCTAAGATTCGCCACCAACTGAGCAAACCGGATTTCAAGACAAAGCCACTTAGAAGA AGCAATTCGACTAGCGGTTACCACCACCAACCGGCTTCAGAACGTGGGCTTATCATCAGAACGTGGGTTTGTGGTGAACG TGGGAAACAACAGCGTGAGCGGGAAGCTTGGGCAGATCGTGGGTAGCTTCGACAACACCAGCAGTTGAATCAAGAAAGCC TATAAATAGGAGAATCAGACAAAGAGAAAGGCTTCGCAATTTTCACAACTCACAAACACTCAAAAAGCTCCAATGTCCGA ATCAATGAGACTCCATGGGCCACAAGAGTTTGCCACTGAGTATGTAGTTGTTTGAACCAGCCTTTAAATTTCGACGCAAT GTTTCATCTTGTAATCAAAGC
CDS sequence (LotjaGi5g1v0204000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTATGACCCAATTCGCCATGGTTGAGGAGTTGGCTTTTCTTGTGAAGGACAATCTTCCTTGCAAGCATCTAGTTCT CACAATGGAGGAAGTCTTAGTTAACTTTCTCGAGGCTGATGACACAAGTTCAGATGGGATCTTGGAATTGGAGCCAATGA ACTCTTACAACCGTCTTCTCTTACATCGCCTTGCTGAGATATTTGGGTTTGCGCATGAATCTGTTGGTGAAGGAGATGAT CGGCATTTGATTCTTGAGAGATGTCCAGATACATCTATGCCTTCTATCCTTGTCAGTGATATTCTATGGAAATATGATGA ACCTCAATCTTTGATGGAGTCACACGACTCGCATCAAATATTAAGGAGAAAAGAAGCCTCTCCAGTTTCACAGACAAACG CAGCATCCATTCAACAGTCGCTGGAGGAAAGAAAAGCAGCTTATTTTGCTGCTCGTGAGCGGATTTTTTCTCTGAGTTTG GAAGAGGGGAAAGAGCCTGGTGAGCAAAAGCCACGAACTGTGCCTGTGGTTGCCCGCCGTATGATTGCGCATGCATTAGG TCAAAGGATCCATACGAGGAATCAGAATGACTTGGTTAGTGATAGTATGAAGGATAAAGTGCTCACAGATGAATTAAATG GTCAAGATAAGACTAGTGAGAAGTCTAATCTCATGAAGGATTCTGAAGAGTCCTTACACCTGAGAAGAAACTCAAATAGC AAAATAAGAAACACAGGCAGTTCTAATGCTGGCTCGCACCATAAAAGGAATGATCAAACACCTGTTGAGAAACATTTGCC ACAATTCTCTCCAAATAGAAAACAAGGGCAAAGTGTGAGTAAAGAGGACATGAAAAAGGAGAACTTAGGAGCTGCGAAGA GAATGTTTGCTCATGCTTTGGGAGTACACTCTGGAAAGGATGGTTCTGTTGCTAGAAATAGAAATGGAGAAATTAATAAG AATTAG
Protein sequence (LotjaGi5g1v0204000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMTQFAMVEELAFLVKDNLPCKHLVLTMEEVLVNFLEADDTSSDGILELEPMNSYNRLLLHRLAEIFGFAHESVGEGDD RHLILERCPDTSMPSILVSDILWKYDEPQSLMESHDSHQILRRKEASPVSQTNAASIQQSLEERKAAYFAARERIFSLSL EEGKEPGEQKPRTVPVVARRMIAHALGQRIHTRNQNDLVSDSMKDKVLTDELNGQDKTSEKSNLMKDSEESLHLRRNSNS KIRNTGSSNAGSHHKRNDQTPVEKHLPQFSPNRKQGQSVSKEDMKKENLGAAKRMFAHALGVHSGKDGSVARNRNGEINK N
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 314 | 314 | 4.0E-129 | – | |
| PANTHER | 1 | 314 | 314 | 4.0E-129 | – | |
| Gene3D | 2 | 127 | 126 | 6.7E-16 | ||
| SMART | 10 | 88 | 79 | 4.8E-7 | ||
| SUPERFAMILY | 15 | 109 | 95 | 4.9E-20 | ||
| CDD | 22 | 88 | 67 | 2.24725E-16 | – | |
| ProSiteProfiles | 23 | 89 | 67 | 16.929 | ||
| Pfam | 26 | 86 | 61 | 3.9E-17 | ||
| ProSiteProfiles | 92 | 160 | 69 | 9.087 | ||
| Pfam | 119 | 157 | 39 | 5.8E-8 | ||
| MobiDBLite | 193 | 321 | 129 | - | – | |
| MobiDBLite | 198 | 237 | 40 | - | – | |
| MobiDBLite | 238 | 255 | 18 | - | – | |
| MobiDBLite | 263 | 277 | 15 | - | – | |
| MobiDBLite | 278 | 292 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0204000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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